FFCP PHASE1:Hg19::chr1:94526344..94526353,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:94526344..94526353,-
|short_description=p4@ABCA4
|description=CAGE_peak_4_at_ABCA4_5end
|association_with_transcript=-57bp_to_U66691_5end
|EntrezGene=24
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=24 | |EntrezGene=24 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=34 | |HGNC=34 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-57bp_to_U66691_5end | |||
|cluster_id=chr1:94526344..94526353,- | |||
|coexpression_cluster_id=C357 | |||
|description=CAGE_peak_4_at_ABCA4_5end | |||
|id=chr1:94526344..94526353,- | |||
|ontology_enrichment_celltype=CL:0002139!2.57e-26!24;CL:0000115!2.10e-20!35;CL:0002144!1.03e-15!3;CL:0000071!1.10e-15!18;CL:0002546!1.10e-15!18;CL:0002078!1.23e-15!44;CL:0000064!3.67e-14!3;CL:0005012!3.67e-14!3;CL:0000067!3.67e-14!3;CL:0002304!3.67e-14!3;CL:0005020!2.26e-13!6;CL:0002138!2.26e-13!6;CL:0005022!2.26e-13!6;CL:0000213!2.01e-11!57;CL:0000215!2.01e-11!57;CL:1000413!2.96e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002144;5.41e-85;3!CL:0002138;8.03e-43;6!CL:0002139;1.79e-42;24!CL:0000115;8.11e-26;36!CL:0002078;1.54e-24;45!CL:0000213;1.39e-17;58!CL:0000215;1.39e-17;58!CL:0000071;6.22e-15;18!CL:0002188;6.58e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,7.21e-85,3;CL:0005020,7.48e-43,6;CL:0002138,7.48e-43,6;CL:0005022,7.48e-43,6;CL:0002139,1.86e-42,24;CL:0000115,1.73e-38,36;CL:0002078,6.99e-31,45;CL:0000213,4.74e-24,58;CL:0000215,4.74e-24,58;CL:0000071,6.53e-15,18;CL:0002546,6.53e-15,18;CL:0000222,1.14e-11,121;CL:0002188,6.39e-07,5 | |||
|ontology_enrichment_development_v019=CL:0005022;8.03e-43;6!CL:0002546;6.22e-15;18!CL:0000222;8.81e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001915!1.03e-15!3;UBERON:0001982!1.03e-15!3;UBERON:0001986!1.10e-15!18;UBERON:0004638!1.10e-15!18;UBERON:0004852!1.10e-15!18;UBERON:0001778!3.67e-14!3;UBERON:0001775!3.67e-14!3;UBERON:0002049!2.25e-13!79;UBERON:0007798!2.25e-13!79;UBERON:0000487!1.36e-12!22;UBERON:0002465!7.37e-12!10;UBERON:0006914!6.31e-11!25;UBERON:0000488!9.52e-11!4;UBERON:0002200!2.64e-10!11;UBERON:0006876!2.64e-10!11;UBERON:0001473!4.84e-10!8;UBERON:0004536!4.84e-10!8;UBERON:0006558!4.84e-10!8;UBERON:0004535!1.54e-08!110;UBERON:0003915!2.96e-08!9;UBERON:0004700!2.96e-08!9;UBERON:0001917!2.96e-08!9;UBERON:0001009!3.26e-08!113;UBERON:0000055!1.66e-07!69;UBERON:0002203!2.59e-07!6;UBERON:0001768!2.59e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;5.41e-85;3!UBERON:0001915;5.41e-85;3!UBERON:0001982;5.41e-85;3!UBERON:0001473;2.31e-32;8!UBERON:0004536;2.31e-32;8!UBERON:0006558;2.31e-32;8!UBERON:0002465;4.46e-26;10!UBERON:0004638;6.22e-15;18!UBERON:0001986;6.22e-15;18!UBERON:0004852;6.22e-15;18!UBERON:0000055;1.81e-12;65!UBERON:0000487;2.35e-12;22!UBERON:0006914;5.84e-11;25!UBERON:0002405;3.75e-10;27!UBERON:0000490;6.90e-08;33!UBERON:0002049;1.05e-07;75!UBERON:0007798;1.05e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,7.21e-85,3;UBERON:0001915,7.21e-85,3;UBERON:0001982,7.21e-85,3;UBERON:0001473,2.19e-32,8;UBERON:0004536,2.19e-32,8;UBERON:0006558,2.19e-32,8;UBERON:0002465,4.28e-26,10;UBERON:0000055,3.04e-15,68;UBERON:0004638,6.53e-15,18;UBERON:0001986,6.53e-15,18;UBERON:0004852,6.53e-15,18;UBERON:0002049,2.52e-13,78;UBERON:0007798,2.52e-13,78;UBERON:0000487,2.44e-12,22;UBERON:0006914,6.05e-11,25;UBERON:0004535,1.35e-09,109;UBERON:0001009,2.41e-09,112 | |||
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| ||
|short_description=p4@ABCA4 | |||
}} | }} |
Latest revision as of 22:36, 19 September 2015
Short description: | p4@ABCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ABCA4_5end |
Coexpression cluster: | C357_Endothelial_Lymphatic_Renal_Hepatic_seminal_breast_heart |
Association with transcript: | -57bp_to_U66691_5end |
EntrezGene: | ABCA4 |
HGNC: | 34 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 7.21e-85 | 3 |
lymphangioblast | 7.48e-43 | 6 |
endothelial cell of lymphatic vessel | 7.48e-43 | 6 |
vascular lymphangioblast | 7.48e-43 | 6 |
endothelial cell of vascular tree | 1.86e-42 | 24 |
endothelial cell | 1.73e-38 | 36 |
meso-epithelial cell | 6.99e-31 | 45 |
lining cell | 4.74e-24 | 58 |
barrier cell | 4.74e-24 | 58 |
blood vessel endothelial cell | 6.53e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.53e-15 | 18 |
mesodermal cell | 1.14e-11 | 121 |
glomerular endothelial cell | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 7.21e-85 | 3 |
endothelium of capillary | 7.21e-85 | 3 |
capillary | 7.21e-85 | 3 |
lymphatic vessel | 2.19e-32 | 8 |
lymph vasculature | 2.19e-32 | 8 |
lymphatic part of lymphoid system | 2.19e-32 | 8 |
lymphoid system | 4.28e-26 | 10 |
vessel | 3.04e-15 | 68 |
blood vessel endothelium | 6.53e-15 | 18 |
endothelium | 6.53e-15 | 18 |
cardiovascular system endothelium | 6.53e-15 | 18 |
vasculature | 2.52e-13 | 78 |
vascular system | 2.52e-13 | 78 |
simple squamous epithelium | 2.44e-12 | 22 |
squamous epithelium | 6.05e-11 | 25 |
cardiovascular system | 1.35e-09 | 109 |
circulatory system | 2.41e-09 | 112 |