FFCP PHASE1:Hg19::chr6:83073396..83073408,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7162 | |EntrezGene=7162 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12004 | |HGNC=12004 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_uc010kbj.2_5end | |association_with_transcript=33bp_to_uc010kbj.2_5end | ||
|cluster_id=chr6:83073396..83073408,+ | |||
|coexpression_cluster_id=C1089 | |||
|description=CAGE_peak_5_at_TPBG_5end | |description=CAGE_peak_5_at_TPBG_5end | ||
|id=chr6:83073396..83073408,+ | |id=chr6:83073396..83073408,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.54e-23!180;CL:0000057!6.07e-16!75;CL:0000393!6.24e-13!60;CL:0000211!6.24e-13!60;CL:0000187!2.60e-12!54;CL:0000680!1.07e-11!57;CL:0000056!1.07e-11!57;CL:0000355!1.07e-11!57;CL:0000192!4.41e-11!42;CL:0000514!4.41e-11!42;CL:0002321!5.88e-11!248;CL:0000220!1.43e-10!246;CL:0000183!2.73e-10!59;CL:0000359!3.99e-09!32;CL:0002620!2.45e-07!23 | |ontology_enrichment_celltype=CL:0000055!4.54e-23!180;CL:0000057!6.07e-16!75;CL:0000393!6.24e-13!60;CL:0000211!6.24e-13!60;CL:0000187!2.60e-12!54;CL:0000680!1.07e-11!57;CL:0000056!1.07e-11!57;CL:0000355!1.07e-11!57;CL:0000192!4.41e-11!42;CL:0000514!4.41e-11!42;CL:0002321!5.88e-11!248;CL:0000220!1.43e-10!246;CL:0000183!2.73e-10!59;CL:0000359!3.99e-09!32;CL:0002620!2.45e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0002620;7.01e-08;23!CL:0002334;6.27e-07;12!CL:0000134;9.27e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.16e-13,76;CL:0000393,1.41e-08,61;CL:0000211,1.41e-08,61;CL:0000187,2.62e-08,55;CL:0000192,1.44e-07,43;CL:0000514,1.44e-07,43;CL:0002620,1.64e-07,23;CL:0000680,2.16e-07,58;CL:0000056,2.16e-07,58;CL:0000355,2.16e-07,58;CL:0002334,3.44e-07,12;CL:0002321,5.76e-07,250;CL:0000359,8.97e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.75e-08!14 | |ontology_enrichment_disease=DOID:2394!6.75e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;2.28e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.54e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000486!3.33e-16!82;UBERON:0000475!9.14e-14!365;UBERON:0004290!1.25e-13!70;UBERON:0000914!2.80e-13!83;UBERON:0002329!2.80e-13!83;UBERON:0003077!2.80e-13!83;UBERON:0003059!2.80e-13!83;UBERON:0007282!2.80e-13!83;UBERON:0009618!2.80e-13!83;UBERON:0007285!2.80e-13!83;UBERON:0002100!6.19e-13!216;UBERON:0003102!4.99e-12!95;UBERON:0000468!2.09e-11!659;UBERON:0002385!1.92e-10!63;UBERON:0001015!1.92e-10!63;UBERON:0000383!1.92e-10!63;UBERON:0001134!2.11e-10!61;UBERON:0002036!2.11e-10!61;UBERON:0003082!2.11e-10!61;UBERON:0005156!2.13e-10!59;UBERON:0000990!2.13e-10!59;UBERON:0005256!1.11e-09!143;UBERON:0003100!2.25e-09!41;UBERON:0003134!2.59e-08!37;UBERON:0000474!2.59e-08!37;UBERON:0004573!5.00e-08!33;UBERON:0004571!5.00e-08!33;UBERON:0003133!5.04e-08!48;UBERON:0000467!7.88e-08!625;UBERON:0000481!8.92e-08!347;UBERON:0000480!1.16e-07!626;UBERON:0002199!1.30e-07!45;UBERON:0002416!1.30e-07!45;UBERON:0003104!1.54e-07!238;UBERON:0009142!1.54e-07!238;UBERON:0001637!1.87e-07!42;UBERON:0003509!1.87e-07!42;UBERON:0004572!1.87e-07!42;UBERON:0000922!3.08e-07!612;UBERON:0000119!4.30e-07!312;UBERON:0000483!4.87e-07!309;UBERON:0002097!4.93e-07!40 | |ontology_enrichment_uberon=UBERON:0000486!3.33e-16!82;UBERON:0000475!9.14e-14!365;UBERON:0004290!1.25e-13!70;UBERON:0000914!2.80e-13!83;UBERON:0002329!2.80e-13!83;UBERON:0003077!2.80e-13!83;UBERON:0003059!2.80e-13!83;UBERON:0007282!2.80e-13!83;UBERON:0009618!2.80e-13!83;UBERON:0007285!2.80e-13!83;UBERON:0002100!6.19e-13!216;UBERON:0003102!4.99e-12!95;UBERON:0000468!2.09e-11!659;UBERON:0002385!1.92e-10!63;UBERON:0001015!1.92e-10!63;UBERON:0000383!1.92e-10!63;UBERON:0001134!2.11e-10!61;UBERON:0002036!2.11e-10!61;UBERON:0003082!2.11e-10!61;UBERON:0005156!2.13e-10!59;UBERON:0000990!2.13e-10!59;UBERON:0005256!1.11e-09!143;UBERON:0003100!2.25e-09!41;UBERON:0003134!2.59e-08!37;UBERON:0000474!2.59e-08!37;UBERON:0004573!5.00e-08!33;UBERON:0004571!5.00e-08!33;UBERON:0003133!5.04e-08!48;UBERON:0000467!7.88e-08!625;UBERON:0000481!8.92e-08!347;UBERON:0000480!1.16e-07!626;UBERON:0002199!1.30e-07!45;UBERON:0002416!1.30e-07!45;UBERON:0003104!1.54e-07!238;UBERON:0009142!1.54e-07!238;UBERON:0001637!1.87e-07!42;UBERON:0003509!1.87e-07!42;UBERON:0004572!1.87e-07!42;UBERON:0000922!3.08e-07!612;UBERON:0000119!4.30e-07!312;UBERON:0000483!4.87e-07!309;UBERON:0002097!4.93e-07!40 | ||
|ontology_enrichment_uberon_v019= | |||
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| ||
|short_description=p5@TPBG | |short_description=p5@TPBG | ||
}} | }} |
Latest revision as of 23:29, 19 September 2015
Short description: | p5@TPBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TPBG_5end |
Coexpression cluster: | C1089_Smooth_Small_Fibroblast_Prostate_anaplastic_mesenchymal_nasal |
Association with transcript: | 33bp_to_uc010kbj.2_5end |
EntrezGene: | TPBG |
HGNC: | 12004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.16e-13 | 76 |
electrically responsive cell | 1.41e-08 | 61 |
electrically active cell | 1.41e-08 | 61 |
muscle cell | 2.62e-08 | 55 |
smooth muscle cell | 1.44e-07 | 43 |
smooth muscle myoblast | 1.44e-07 | 43 |
skin fibroblast | 1.64e-07 | 23 |
muscle precursor cell | 2.16e-07 | 58 |
myoblast | 2.16e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.16e-07 | 58 |
preadipocyte | 3.44e-07 | 12 |
embryonic cell | 5.76e-07 | 250 |
vascular associated smooth muscle cell | 8.97e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
surface structure | 7.84e-13 | 99 |
multilaminar epithelium | 1.24e-11 | 83 |
somite | 7.76e-10 | 71 |
presomitic mesoderm | 7.76e-10 | 71 |
presumptive segmental plate | 7.76e-10 | 71 |
dermomyotome | 7.76e-10 | 71 |
trunk paraxial mesoderm | 7.76e-10 | 71 |
paraxial mesoderm | 1.58e-09 | 72 |
presumptive paraxial mesoderm | 1.58e-09 | 72 |
dense mesenchyme tissue | 3.13e-09 | 73 |
trunk | 6.55e-09 | 199 |
trunk mesenchyme | 1.30e-08 | 122 |
epithelial vesicle | 2.12e-08 | 78 |
integument | 2.35e-08 | 46 |
integumental system | 2.35e-08 | 46 |
female organism | 4.82e-08 | 41 |
reproductive structure | 1.20e-07 | 59 |
reproductive system | 1.20e-07 | 59 |
skin of body | 1.73e-07 | 41 |
systemic artery | 5.08e-07 | 33 |
systemic arterial system | 5.08e-07 | 33 |
female reproductive organ | 5.72e-07 | 37 |
female reproductive system | 5.72e-07 | 37 |
organ component layer | 8.12e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.54e-10 | 14 |