FFCP PHASE1:Hg19::chr19:55574448..55574537,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=112724 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19978 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NBN7,B3KVA3 | |||
|association_with_transcript=47bp_to_ENST00000415061,NM_001145971,NR_027381,NR_027382,uc002qio.3,uc010yfq.1_5end | |||
|cluster_id=chr19:55574448..55574537,- | |||
|description=CAGE_peak_1_at_RDH13_5end | |||
|id=chr19:55574448..55574537,- | |||
|ontology_enrichment_celltype=CL:0000066!1.19e-09!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.95e-10,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!9.84e-14!31;DOID:1240!6.02e-12!39;DOID:2531!1.55e-09!51;DOID:0060083!1.55e-09!51;DOID:162!8.50e-08!235;DOID:14566!6.50e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.20e-13;31!DOID:1240;1.95e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,9.83e-14,31;DOID:1240,6.02e-12,39;DOID:2531,1.50e-09,51;DOID:0060083,1.50e-09,51;DOID:162,8.36e-08,235;DOID:14566,6.40e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.31e-08!115;UBERON:0000064!3.78e-08!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;7.99e-07;30!UBERON:0001008;7.99e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.56e-08,114;UBERON:0006554,2.60e-07,47;UBERON:0001008,3.01e-07,48 | |||
|phase1_expression=6.7221000330106,11.7755288140041,8.73917305395021,5.00366491765652,8.49226079411847,1.74467704820074,10.1319951267324,6.94891860769514,15.4099520637905,18.6757791741147,32.7966548947041,12.4511582114198,13.1883489114227,3.58922423584135,6.2965501388304,4.70627602516243,3.61616716814386,4.38186054232424,7.80692478064811,9.60344252998946,12.2400414746552,12.2247341376454,4.57977579409691,4.10623275218653,6.77930253811935,13.3723460058915,14.2034019748406,13.1447004793844,4.72037132218685,4.98978217526377,5.26374819274658,19.3078457140575,17.4699432891385,11.4623743151704,13.5567601015528,26.5856464751478,5.5784083473621,7.75593571944628,6.81851121398482,5.20826089718044,7.61312612415743,3.2389366601898,7.98484259665978,1.16318591023652,1.13362783106643,2.91100873425379,1.16214518452842,0.411167888021826,1.23882548358041,0.28769239232215,0.512321413058201,0.236482229888585,0.344745680736619,0.645484683583826,4.06279459783025,0.564727018627814,0.272906150057846,0.674170453335254,0.306083892370903,0.641858054152187,1.27867425159808,0.989553900560148,0,0.852449501065388,0.580418477257168,0,0.622822248995575,1.00499466102697,1.0429658368404,0.868755378820466,3.02699751316684,1.47311054395026,0.632924774881769,10.5627643155971,7.65375479874157,9.85395633889367,5.95341745076424,6.15725260650176,6.58974905458029,7.41033133727246,8.55341711956087,10.5945209183488,17.5996244461323,8.7382177801941,10.6741110463627,11.5217160092957,10.0098996759003,7.47178171940828,9.91567309177293,11.4486450544244,6.83055562931338,9.98303221930596,8.02773779062981,1.32171328579026,4.48406850385229,3.95076127162616,7.67168103443949,15.7204305099666,12.7472929379696,17.5545820160212,10.4295125322749,8.99550830895993,19.4826728407911,14.4833593950726,9.72199494666963,10.8551608345974,14.3526047795458,13.4495885711959,18.4684273535027,22.0346792168926,28.7404018497282,23.4740499445393,10.3800594213442,12.3068780921268,27.179236189294,13.8237398091031,8.04763036564035,9.96519591899627,9.86776798876061,8.91983160107471,13.0216690771284,11.4054245333805,13.1000353597662,13.0546343377507,14.9916871862815,11.3653080981128,6.56902397536837,13.3060450528323,14.1743303765259,10.1377082717959,14.6284119788377,6.03630773733273,6.64885321586358,6.14446559053763,11.0294340339896,5.64901423947212,3.1811437882044,8.27279279514481,7.46825055596136,6.20842312895179,6.14843499851882,13.0979075497713,25.1363748921854,24.4717732237723,4.86821090482025,6.96518949197069,11.9662164466979,2.14641561874808,4.0039643754609,2.60020250930695,9.93812036833526,7.74211135595512,9.02565304179745,13.0020826642522,10.9069853414576,6.87795104850169,10.0317583937669,11.3703374034505,7.1153252537342,11.7152214467635,9.26507429351038,16.7259863258073,8.7862340717341,5.51494620518803,10.5318453224629,8.03697554556718,9.87929239555147,10.8107021263989,15.3316637465883,17.0867818722263,13.923332538711,2.63560834872127,0,17.4437620857014,4.96971951695318,4.30543739659571,8.87141511448566,11.1866282092037,6.02936249737207,6.72813120170769,8.5399196583764,7.15335890409764,2.17847724779836,6.7355336034844,6.53847612453835,5.90293967815232,10.37116664064,7.73260725051529,7.49184184392769,14.8322673601557,5.38015249986484,8.10298040641978,7.12240955219779,9.5506548557529,4.08308342509786,8.47556789451199,4.95963749643674,2.37600571456411,7.91254173691382,4.55080680969013,10.7792721272436,6.22843621630045,8.25782231154963,3.87889761677856,3.5118209670467,6.74273150757843,7.66214100423644,9.52830338544177,11.660326319776,7.04739383101272,5.29829752898905,11.7035527472917,5.04957393268351,11.0785432219621,6.88632368426882,9.11392194102838,3.60516919096435,13.3789900349381,4.60249493211497,5.4959659318396,6.74518225781567,3.12331504505685,5.4259389539356,9.27652095183825,12.5463215471784,12.9062067925052,14.8807921478106,13.915625673756,11.3870064012128,9.74413917144482,14.8869302016621,13.8691396448815,9.38697193978896,11.5783368874719,11.0507937081984,3.71494342425583,2.88751792667834,14.3151228048211,14.1611139665605,13.978639733242,13.3455707006197,15.2515610864684,11.3889897173326,15.3707691302587,14.1279454890249,16.9288749056412,16.9775754563669,14.0241773803446,8.231480226628,16.1709582524096,12.6755034821831,3.9313088667105,10.6342183202653,3.97316789473185,15.127577940803,7.20584803253807,24.1450627898976,16.8602629886429,9.95236826875145,7.22189872236531,9.77424915930974,11.4392826380754,10.1031939417691,4.521285794028,7.27933904262094,8.08452107462013,2.77791307545966,6.84914948044554,26.0767451326561,26.613071024941,5.66299114001014,6.08411089362018,8.02608276359133,5.62403003920662,6.71928512795438,11.6255579738757,5.64218693027944,11.6253575405585,13.8017764499476,1.47798971368783,9.77337617546809,8.50045273717165,7.20599767084807,10.9830917080951,12.6995788584338,16.0435138734477,24.6156639141099,22.2394179829517,15.5269513982019,18.020583470635,10.861404439962,9.19474891631958,11.3349617896653,9.0939474417978,3.36106460970222,35.7656445851882,9.298330278116,7.97814349754611,6.24044621468197,9.25946547343712,8.5109479213967,11.9889980557245,3.86040582876998,4.88359444852299,4.11620168390384,4.88604276440603,4.26470338491055,6.33561498346743,25.9237864271244,12.2014684204041,29.0921404339786,4.86495122564762,4.52031382288914,4.21667878966063,7.42837052023906,8.04033550838797,0,4.77778312003011,4.52047909610843,4.29746311775749,13.6743875672103,11.6248148519137,18.1127162881995,11.5508732651774,8.38512259934129,7.8083912314573,4.63973287666617,5.52803675603351,6.37938751653163,0.749007023947182,0,0.828831026872071,6.87072353627183,11.5039219843726,3.52644530809656,5.40724239980099,3.56857977594324,5.04647728108591,5.38850508966481,10.2321673907424,9.09630016223939,7.24311499047534,5.31380478828349,9.21845842708516,4.17041349446798,14.2934844947801,13.0394501048125,9.09779314940704,7.98142543028882,8.21802195086521,19.4001645725606,29.9583791118895,11.1884408531982,5.21026396419431,7.82656063769118,5.61320188866147,7.43207065683066,5.62877973973374,5.79074116116987,10.3892646511494,8.94416224055402,7.99027763909072,4.5169935807595,6.75030757938707,5.57809816607804,21.8755603760836,20.4516599709351,18.5082787761152,4.82220682291348,6.55528204824181,6.29397191805236,7.21919380651859,6.16122696835318,17.2556949218908,7.30696123266303,7.59971728028705,10.2360045663807,9.01496637965533,9.50030030849413,27.7609054842521,15.7148933775435,28.0946273358718,15.0377001096573,16.6215201785745,8.05949116999842,3.06963827304308,5.75157992254781,14.1047568814014,26.5691863016762,20.4988388638511,49.4596855909067,0,0,13.208107373912,13.6512651667669,0,6.38026740728005,8.93481979264937,6.44715433849744,7.99452120410277,3.00776685631166,8.1209348591968,8.18175623194569,6.41030656656509,4.79326254546837,6.3422722230485,17.482941611758,8.29493803015509,8.83206543664843,6.92587163027408,11.8496335927302,4.00443654228915,7.45228442443831,13.0489948811261,4.44778125849408,2.00374841438788,6.32669227911434,6.32758849437452,6.48142659341004,9.98001386114202,3.85145089230528,7.31867470229655,6.27958912159384,4.49681143958287,5.4907405947211,5.41937050790158,10.1091240786658,7.92551605865041,5.89761838734574,14.1413784335981,6.33655073041339,13.7345190783782,4.64099698787152,6.08043357400965,4.52032466480971,8.27048015319186,6.6343897524122,10.9612721313441,8.10285747973363,4.59126326432643,6.29022168584383,7.74558745249375,9.29595488356397,3.58528380510129,4.22470876356421,6.06340787518125,3.54761064070598,8.2331977766089,10.5374365747169,9.48682934414288,13.6474540895543,11.1617650761594,16.7575568883947,17.4225575778116,49.2372078062555,26.260827732945,30.3248656201726,38.5784233576908,6.89170200620878,7.10426652925037,4.58782324285425,10.2536493691349,12.8645158747206,11.1067813733272,7.78167973431261,7.02040868409549,9.51750211553125,20.1897494430924,25.9869560921107,18.8680966305394,13.5636317841775,6.78065300989291,5.5490637811763,7.65246109098347,18.5608815432519,11.8733329482067,52.7067220982468,13.3094995512568,20.4981940022825,26.4752227678503,24.4420637405916,25.0634477090067,18.6220955581764,33.7234957717769,15.9421768680928,20.0147731714453,26.4499115461939,10.4461859864876,10.9601292867284,12.1799873449693,14.0679428689469,24.7781494766766,29.540975747451,51.1161232319608,19.9843180798692,21.1480507631774,23.5797080914357,7.76493350141038,4.85442086998054,14.0418664189623,9.37649284461163,18.8608142942775,20.4905629774521,15.6651958070608,8.94732882989668,11.1128838964305,7.34637453151179,16.8099951711295,16.0455310177275,10.7593913655578,16.8533188474,12.0927718970052,5.4202401726142,8.61593638227486,5.28767299025073,8.08815160325942,14.1426727993731,16.3703158472599,20.5178283724822,4.7896618469388,1.11136990144637,22.29465316019,8.53466503089032,19.9613798001194,13.5422435764321,9.88297999957011,8.69999490521752,20.4828206913899,7.37335585849022,25.0570942674013,15.8581951691074,12.2473937620967,15.2789995541297,10.6288966297661,11.81845098529,38.1454340792708,23.4428031054196,31.0324999901225,12.0661968434685,8.60613861800022,12.8269844736315,12.7737429116303,11.3942055847001,8.76142836674629,19.2081359036912,8.0399055222286,16.9070614657917,8.5185761863732,11.72676507241,13.2851287654457,18.5236702546129,19.114343418518,39.4792406080066,36.6636939174173,41.9553967439607,33.9659181576291,17.1651505298809,11.3938954845135,5.06021705293358,16.3969562863371,7.3572137512311,31.8483817945122,20.079867142258,10.9985426088053,11.2678028898636,12.3563938946503,12.4262119911492,9.84056541517885,12.8412423567806,8.43352004611221,17.3332049754883,8.60924323301195,11.6534582176365,21.3075577538671,19.3585145677862,14.385419796633,7.77194929430402,54.8680480862898,23.6409076385723,7.97584647248622,11.253726499767,5.65079253133006,7.16834578637753,6.54601955868523,5.26963757449927,15.4468167118267,6.07552863969141,15.5835979778921,12.9297734499102,4.47163684426203,26.4144784419202,18.3454185886326,26.8517544563994,15.7122206711239,11.296784216512,11.9769792613682,3.01492234222852,6.55758218619866,15.8276989889697,25.6172311382592,7.1341350023865,13.8744446580579,8.39200360244947,14.4090417154106,8.47570811627776,8.92293988882216,37.3101926789308,4.72159635148644,10.6062315577558,4.48483880042926,4.91633377667966,1.93796613509011,6.93481415763645,6.00420288709789,6.02383667124769,2.55493176133945,8.16554338697919,8.93817004549669,20.3876152928746,25.4368070652969,11.485968393229,20.1675790503981,36.4842140916085,31.2440040418622,23.5142153703542,5.04419836959365,23.2991899054908,16.6232514668242,16.0710923843275,16.4464647004211,9.05532829935689,6.77386656526276,6.36183751847443,10.2152554583682,12.6994987287365,12.7911676035427,11.216889126788,0.449947783103001,6.1904156364636,14.7621422679,18.7843425055589,13.0029417043677,26.909203713254,9.39842995022718,7.88864293064517,10.5553358525695,12.1498205483472,15.8902072887704,12.204889807428,5.42999601753713,6.91377192961014,7.184921922407,7.18381149374925,26.8442542850338,9.20095317641277,6.68541339968742,7.03450721654796,13.2506888912221,13.0575785925166,11.3720037498713,5.13260513652988,31.7166760042502,6.40724475406168,6.9169894243853,9.5274982729855,8.93098839261511,12.6471444414684,9.49982267370988,16.5968727020247,5.44017803369474,2.7575888342497,4.59518365145192,7.5410705063255,7.85270481251171,18.6074317793067,11.3484426358826,14.522147961954,12.0415931094915,10.538259896001,12.8539554088664,7.74752355642893,13.6228644678696,11.9802802857902,11.1331480082537,6.11691131215246,10.7717028335583,9.13002480248199,4.17913448083247,3.03827302801392,5.54805861502613,3.59865710022669,3.52195062453605,5.33886732957922,2.28840068396924,3.62954217031774,2.48699520932449,2.51353754982378,2.54874827461924,8.09645601894488,6.83157010255541,4.14706207840855,6.11435943483388,6.78268580355254,21.0360652596106,25.5139492153093,7.73054393088857,3.81882184325375,4.72606450986949,4.17630383890644,10.7485889948626,5.60038870528415,4.12074846219351,4.04099386519103,0,10.5940906724017,15.8686777617445,16.9646289777388,10.4284725735645,3.00979216620984,5.87368090815522,8.23808668974842,33.350556293385,7.67494173525475,12.5449293621576,22.1851144011552,14.1911650148581,24.5991857844429,18.9986687952159,8.20421881678932,13.2728098705662,1.55888247071511,1.99297260470045,3.76200406788442,7.53502652346749,7.6189601713653,5.4941152073243,8.59945802176198,8.64203010522541,0,12.4853509784704,8.46887371158467,10.7707220943972,4.97661808026378,1.66262682694747,4.20516764447059,8.96415868578609,13.1051565830417,10.8628819170576,8.29042188396563,12.0217691331232,12.2901881954114,5.40607396110812,7.25528054011531,35.2251129245607,5.64281509905094,7.04364597912361,15.093867897668,11.3357261060468,18.5175276506295,11.8967491259638,10.8390829375339,21.3695910114433,12.4336247136525,5.71077681036618,3.72961330303897,11.9149420581218,9.17142992608395,4.50550097986319,2.66967466827017,7.59395918666111,12.1338895490928,9.77734268540344,7.0596774046232,16.4117942358949,6.02385397307272,6.05956094787358,8.42779691437158,15.8713323853227,10.15401528198,18.3951248886054,15.7271209280889,13.6743702254555,12.061670870858,18.8560247787932,6.8589785300252,7.28245837545693,11.7854403893223,8.4070930554706,6.67662164660295,5.46389259243114,51.2699699540052,11.6386327431337,8.05993644355867,15.9049175165786,18.9425587861005,6.97343661215412,21.3564291632773,12.7943741346338,12.5692471932802,10.650342205924,8.21842848458546,52.9022598485622,51.1194306039144,16.7969878815142,17.0654700671345,13.4840053427025,10.0837797935496,2.40513409419076,8.08143040235844,10.7552640569188,11.0601545890255,15.9184122763503,4.14162002556979,4.94237747603115,30.9072546639378,3.2074961596167,7.44495325594368,9.55538938977433,42.0576423559699,9.71687312790905,12.9233000481206,16.8331497668853,7.80237332107477,11.598144313382,15.0570407848333,17.5454597596579,12.1359972848435,16.8866528904147,6.7767649223376,9.01512237312519,15.5491728873674,16.4380956769922,6.99390593612663,37.6253837089218,13.4831576964648,12.9622100905894,7.65603021748287,4.75274240523338,11.8343603723352,6.45723035813704,7.33074560242858,13.9873616902662,15.0911145446643,7.67781936004328,9.52816153632368,8.42534350236267,8.03370027071169,30.7348619881042,6.16360207551241,29.3455105679323,19.0376172534561,13.5268714005517,15.870805215462,4.83593523616777,17.5626738879939,9.08515780459957,13.2474746076833,7.2115277496039,11.7829605940636,13.1565590367156,5.61156551057677,19.7574033999917,8.022641257356,8.33565680400634,12.3263499871842,9.12086383404657,9.20553663170868,21.5366321719991,11.6651571417233,6.00676861474857,7.38689100120709,3.58821960257963,12.0293129145732,16.573609494574,17.8527733275508,10.6092323336437,18.7912227910699,7.81772038780172,10.9777917660184,11.4778608741474,6.1901860609075,5.7921684686082,5.12003652007545,21.1176848163109,14.3022489693954,13.4275738844194,9.98635161278269,14.6929869321449,8.65534929218729 | |||
|short_description=p1@RDH13 | |||
}} |
Latest revision as of 23:33, 19 September 2015
Short description: | p1@RDH13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RDH13_5end |
Coexpression cluster: | NA |
Association with transcript: | 47bp_to_ENST00000415061, NM_001145971, NR_027381, NR_027382, uc002qio.3, uc010yfq.1_5end |
EntrezGene: | RDH13 |
HGNC: | 19978 |
UniProt: | Q8NBN7B3KVA3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
0
10
20
30
40
50
60
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data