FFCP PHASE1:Hg19::chr3:99979773..99979784,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55773 | |EntrezGene=55773 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25622 | |HGNC=25622 | ||
|TSSclassifier=strong | |||
|UniProt=C9JAM5 | |UniProt=C9JAM5 | ||
|association_with_transcript=-59bp_to_ENST00000485687_5end | |association_with_transcript=-59bp_to_ENST00000485687_5end | ||
|cluster_id=chr3:99979773..99979784,+ | |||
|description=CAGE_peak_3_at_TBC1D23_5end | |description=CAGE_peak_3_at_TBC1D23_5end | ||
|id=chr3:99979773..99979784,+ | |id=chr3:99979773..99979784,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;3.36e-15;7!CL:0000586;3.36e-15;7!CL:0000511;2.78e-08;1!CL:0002625;2.78e-08;1!CL:0000216;2.78e-08;1!CL:0002601;8.48e-08;1!CL:0000569;2.19e-07;4 | |ontology_enrichment_celltype_v019=CL:0000039;3.36e-15;7!CL:0000586;3.36e-15;7!CL:0000511;2.78e-08;1!CL:0002625;2.78e-08;1!CL:0000216;2.78e-08;1!CL:0002601;8.48e-08;1!CL:0000569;2.19e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.27e-15,7;CL:0000586,5.27e-15,7;CL:0000511,2.70e-08,1;CL:0002625,2.70e-08,1;CL:0000216,2.70e-08,1;CL:0002601,1.54e-07,1;CL:0000569,2.13e-07,4;CL:0000011,2.13e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.10e-10;10!UBERON:0005564;1.10e-10;10!CL:0000011;2.19e-07;4 | |ontology_enrichment_development_v019=UBERON:0009117;1.10e-10;10!UBERON:0005564;1.10e-10;10!CL:0000011;2.19e-07;4 | ||
|ontology_enrichment_disease=DOID:2394!4.37e-07!14 | |ontology_enrichment_disease=DOID:2394!4.37e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3371;2.78e-08;1!DOID:4549;2.78e-08;1!DOID:5861;2.78e-08;1!DOID:6496;2.78e-08;1!DOID:2513;8.48e-08;1 | |ontology_enrichment_disease_v019=DOID:3371;2.78e-08;1!DOID:4549;2.78e-08;1!DOID:5861;2.78e-08;1!DOID:6496;2.78e-08;1!DOID:2513;8.48e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3371,2.89e-08,1;DOID:4549,2.89e-08,1;DOID:5861,2.89e-08,1;DOID:6496,2.89e-08,1;DOID:2513,9.72e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005156!1.88e-07!59;UBERON:0000990!1.88e-07!59 | |ontology_enrichment_uberon=UBERON:0005156!1.88e-07!59;UBERON:0000990!1.88e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.47e-20;8!UBERON:0003135;6.58e-15;11!UBERON:0000991;8.51e-11;21!UBERON:0001136;2.78e-08;1!UBERON:0001343;2.78e-08;1!UBERON:0004910;2.78e-08;1!UBERON:0004813;2.78e-08;1!UBERON:0003101;2.44e-07;22!UBERON:0000079;2.44e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;1.47e-20;8!UBERON:0003135;6.58e-15;11!UBERON:0000991;8.51e-11;21!UBERON:0001136;2.78e-08;1!UBERON:0001343;2.78e-08;1!UBERON:0004910;2.78e-08;1!UBERON:0004813;2.78e-08;1!UBERON:0003101;2.44e-07;22!UBERON:0000079;2.44e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.37e-20,8;UBERON:0003135,9.27e-15,11;UBERON:0000991,9.11e-11,21;UBERON:0009196,9.11e-11,21;UBERON:0009117,9.11e-11,21;UBERON:0005564,9.11e-11,21;UBERON:0004176,2.98e-10,22;UBERON:0001136,2.70e-08,1;UBERON:0001343,2.70e-08,1;UBERON:0004910,2.70e-08,1;UBERON:0005154,2.70e-08,1;UBERON:0005295,2.70e-08,1;UBERON:0004813,2.70e-08,1;UBERON:0005297,2.70e-08,1;UBERON:0005294,2.70e-08,1;UBERON:0010141,2.70e-08,1;UBERON:0005891,2.70e-08,1;UBERON:0003101,2.87e-07,22;UBERON:0000079,2.87e-07,22 | |||
|phase1_expression=0.181678379270557,0,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0.246242116153576,0,0,0.572471974262113,0.136874425072884,0,0.152826811495903,0.246301768349837,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0.401088894940283,0.434021741431704,0,0.32389366601898,0,0.145398238779565,0,0.242584061187816,0,0,1.23882548358041,0,0,1.18241114944293,0,0,1.35426486594342,0,0.272906150057846,1.34834090667051,0.306083892370903,0.962787081228281,0,0,0.199463657621632,0,0,0,0.622822248995575,1.00499466102697,0,0,0,0.368277635987565,0.949387162322653,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.255725123687061,0,0.50133791063589,0.144846518960824,0,0,0.378139268656271,0,0.087834785693126,0.0654895377488563,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0.402829317109147,0,0,0.367663080345869,0,0,0.22452937262617,0,0,0,0,1.31780417436063,0,0,0,0.506522046658319,1.19168262731897,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0.312160076830321,0,0.597794722207204,0.23486899728753,0.323745888736263,0,0.408308342509787,0,0.103325781175765,0,0.741800787835671,0,0,0,0.250237039743928,0.277064115484183,0,0,0,0.340296549480063,0.538168907066586,0,0.847727604638247,0,0.618315175430633,0.257640540045629,0,0.337552664482532,0.0974370051611986,0,0.552299391853796,0.161646056818812,0.355009592516614,0.201504196455281,0,0,0,0.573609190778008,0.121973706129595,0,0.464775771478074,0.10366105501537,0.252320850875628,0,0,0,0,0,0.721879481669586,0,0,0,0.330881918197182,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0.368965315629341,0.857839051492628,0.219500570817251,0,0,0,0,0,0,0.34779121492523,0.587043471179108,0,0,0,0,0,0,0.702012795417713,0,1.87467667973554,0.503946384596579,0,0.179117045405697,0,0,3.4486426652716,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0.1466765716419,0.646358578788889,0,0,1.32969058292435,0,0,0,0,0.285955987316295,0,0,0.325736184293735,0.355391948742546,0,0,0,0.399891964728228,0,0,0,0,0,0,0.434343920002738,0,0.179060963239896,0.224170287987055,0,0,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.535286966391485,0.315404830067869,0.234282829985426,0,0,0,0.664225598535437,0.184369168541703,0.521301686808497,0,0,0,0,0.213455115606889,0,0,0,0,0.920771839728375,0,0.256278298511402,0,0.64341568457443,0,0.308419387605311,0.887808626565635,1.06765302817952,0.519254429183621,0.581051892299796,0.120859449591622,0,0.0920809889358963,0.68888668898764,0.182091168006717,0.393373244878272,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0.501689773854853,0,0,0,1.31555925987561,0.261435451024901,0.256450125116389,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,6.42735719376638,0.096670718292122,0.462145851343933,0.15350367472613,0.137836572484531,0.107420244868274,0,0.681813019328807,0,0,0,0,0,0,1.25924938732256,0.6970372701606,0,0,0,0.18532421910392,0,0,0,0.38126038784765,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0.202182481573316,0,0.421258456238981,0,0.487426979262569,0,0.136499911407986,0.141405431953713,0,0,0,0.876901770507525,0,0,0,0,0,0.286822704408103,0.294747123039363,0.35667105148125,1.06428319221179,0.633322905892992,0.658589785919804,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0,0,0,0,0.144269212976445,0.142283686696828,0.159426272728822,0,0,0,0,0.280797178113459,0,0,0,0.169291777801603,0,0,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0.270455678475983,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0.281338832821026,0.111308705022906,0,0,0,0,0,0,0.123084805461069,1.24415835064723,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0.557694977114413,0.230850775511391,0.569710279235006,0,0,0,0,0.366390373607449,0,0,0,0.166211681900156,0.225595660617181,0.19606253431774,0.335643173951685,0.189753732724185,0,0,0.163232808159148,0.282706142867882,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0.19566461893209,0,0.789168805698781,1.20990716048664,0,0,0.150323419414493,0.103688191397247,0,0,0,0,0,0.277349346026277,0.173559738335131,0.391969589657511,0.174118413160805,0.17472666824203,0,0,0,0.164230914106418,0.0969890164884194,6.35444112178802,0,0,0.19871461170299,0,0,0.160317640503067,0,0.39961921916426,0,0,0.343189995723929,0,0,0,0.135904206073614,0,0.101998217636322,0.288950589901519,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,0.0984274815147488,0,0,0.136203406111576,0.643012593860077,0.687697182986169,0.415440338029185,0.2249738915515,0,0,0,0.0788057072991982,0.0524545881349981,0.211200673038813,0,0,0,0,0,0.542999601753713,0,0.653174720218818,0,0.410462603746695,0,0,0.146552233678082,1.32506888912221,0,0.26446520348538,0,0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| ||
|short_description=p3@TBC1D23 | |short_description=p3@TBC1D23 | ||
}} | }} |
Latest revision as of 00:51, 20 September 2015
Short description: | p3@TBC1D23 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TBC1D23_5end |
Coexpression cluster: | NA |
Association with transcript: | -59bp_to_ENST00000485687_5end |
EntrezGene: | TBC1D23 |
HGNC: | 25622 |
UniProt: | C9JAM5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.27e-15 | 7 |
germ cell | 5.27e-15 | 7 |
androgen binding protein secreting cell | 2.70e-08 | 1 |
seminiferous tubule epithelial cell | 2.70e-08 | 1 |
Sertoli cell | 2.70e-08 | 1 |
uterine smooth muscle cell | 1.54e-07 | 1 |
cardiac mesenchymal cell | 2.13e-07 | 4 |
migratory trunk neural crest cell | 2.13e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 2.37e-20 | 8 |
male reproductive organ | 9.27e-15 | 11 |
gonad | 9.11e-11 | 21 |
indifferent external genitalia | 9.11e-11 | 21 |
indifferent gonad | 9.11e-11 | 21 |
gonad primordium | 9.11e-11 | 21 |
external genitalia | 2.98e-10 | 22 |
mesothelium | 2.70e-08 | 1 |
seminiferous tubule of testis | 2.70e-08 | 1 |
epithelium of male gonad | 2.70e-08 | 1 |
epithelial cord | 2.70e-08 | 1 |
sex cord | 2.70e-08 | 1 |
seminiferous tubule epithelium | 2.70e-08 | 1 |
testis sex cord | 2.70e-08 | 1 |
genital ridge | 2.70e-08 | 1 |
primitive sex cord of indifferent gonad | 2.70e-08 | 1 |
coelomic epithelium | 2.70e-08 | 1 |
male organism | 2.87e-07 | 22 |
male reproductive system | 2.87e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.89e-08 | 1 |
extraosseous chondrosarcoma | 2.89e-08 | 1 |
myxoid chondrosarcoma | 2.89e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 2.89e-08 | 1 |
basal cell carcinoma | 9.72e-08 | 1 |