FFCP PHASE1:Hg19::chrX:153095817..153095832,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57595 | |EntrezGene=57595 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21167 | |HGNC=21167 | ||
|TSSclassifier=strong | |||
|UniProt=B7ZKY3 | |UniProt=B7ZKY3 | ||
|association_with_transcript=-4bp_to_ENST00000544474_5end | |association_with_transcript=-4bp_to_ENST00000544474_5end | ||
|cluster_id=chrX:153095817..153095832,- | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_3_at_PDZD4_5end | |description=CAGE_peak_3_at_PDZD4_5end | ||
|id=chrX:153095817..153095832,- | |id=chrX:153095817..153095832,- | ||
|ontology_enrichment_celltype=CL:0002322!2.58e-12!5;CL:0000047!3.26e-10!8;CL:0000540!6.40e-10!6;CL:0000031!6.40e-10!6;CL:0000404!6.40e-10!6 | |ontology_enrichment_celltype=CL:0002322!2.58e-12!5;CL:0000047!3.26e-10!8;CL:0000540!6.40e-10!6;CL:0000031!6.40e-10!6;CL:0000404!6.40e-10!6 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.76e-48;5!CL:0000039;3.38e-22;7!CL:0000586;3.38e-22;7!CL:0002321;5.11e-16;15!CL:0000540;1.84e-15;6!CL:0000404;1.84e-15;6!CL:0000148;2.88e-09;10!CL:0000147;9.41e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.76e-48,5;CL:0000039,3.38e-22,7;CL:0000586,3.38e-22,7;CL:0000540,1.84e-15,6;CL:0000031,1.84e-15,6;CL:0000404,1.84e-15,6;CL:0000047,9.81e-12,8;CL:0000148,2.88e-09,10;CL:0000541,2.88e-09,10;CL:0000147,9.41e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.81e-24;10!UBERON:0005564;8.81e-24;10!CL:0000031;1.84e-15;6 | |||
|ontology_enrichment_disease=DOID:3095!4.98e-10!22;DOID:2994!4.98e-10!22 | |ontology_enrichment_disease=DOID:3095!4.98e-10!22;DOID:2994!4.98e-10!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;3.18e-15;22!DOID:2994;3.18e-15;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.18e-15,22;DOID:2994,3.18e-15,22 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000473;1.84e-19;8!UBERON:0000922;4.01e-15;49!UBERON:0003135;3.17e-14;11!UBERON:0000991;2.75e-11;21!UBERON:0001872;2.60e-08;5!UBERON:0003101;3.38e-07;22!UBERON:0000079;3.38e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.84e-19,8;UBERON:0003135,3.18e-14,11;UBERON:0000991,2.75e-11,21;UBERON:0009196,2.75e-11,21;UBERON:0009117,2.75e-11,21;UBERON:0005564,2.75e-11,21;UBERON:0004176,9.09e-11,22;UBERON:0001872,2.51e-08,5;UBERON:0003101,3.38e-07,22;UBERON:0000079,3.38e-07,22 | |||
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| ||
|short_description=p3@PDZD4 | |short_description=p3@PDZD4 | ||
}} | }} |
Latest revision as of 00:59, 20 September 2015
Short description: | p3@PDZD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDZD4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -4bp_to_ENST00000544474_5end |
EntrezGene: | PDZD4 |
HGNC: | 21167 |
UniProt: | B7ZKY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.76e-48 | 5 |
germ line cell | 3.38e-22 | 7 |
germ cell | 3.38e-22 | 7 |
neuron | 1.84e-15 | 6 |
neuroblast | 1.84e-15 | 6 |
electrically signaling cell | 1.84e-15 | 6 |
neuronal stem cell | 9.81e-12 | 8 |
melanocyte | 2.88e-09 | 10 |
melanoblast | 2.88e-09 | 10 |
pigment cell | 9.41e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
testis | 1.84e-19 | 8 |
male reproductive organ | 3.18e-14 | 11 |
gonad | 2.75e-11 | 21 |
indifferent external genitalia | 2.75e-11 | 21 |
indifferent gonad | 2.75e-11 | 21 |
gonad primordium | 2.75e-11 | 21 |
external genitalia | 9.09e-11 | 22 |
parietal lobe | 2.51e-08 | 5 |
male organism | 3.38e-07 | 22 |
male reproductive system | 3.38e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.18e-15 | 22 |
germ cell cancer | 3.18e-15 | 22 |