FFCP PHASE1:Hg19::chr9:113018779..113018796,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:113018779..113018796,-
|short_description=p1@TXN
|description=CAGE_peak_1_at_TXN_5end
|association_with_transcript=-1bp_to_uc004bep.1,uc004beq.1_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7295 | |EntrezGene=7295 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12435 | |HGNC=12435 | ||
|TSSclassifier=strong | |||
|UniProt=P10599,O60744 | |UniProt=P10599,O60744 | ||
|association_with_transcript=-1bp_to_uc004bep.1,uc004beq.1_5end | |||
|cluster_id=chr9:113018779..113018796,- | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_1_at_TXN_5end | |||
|id=chr9:113018779..113018796,- | |||
|ontology_enrichment_celltype=CL:0000012!7.66e-43!682;CL:0000548!4.07e-42!679;CL:0000004!4.07e-42!679;CL:0000255!4.07e-42!679;CL:0000144!6.08e-27!625;CL:0000003!1.42e-24!722;CL:0002371!4.16e-24!591;CL:0000063!4.44e-24!578;CL:0000723!1.64e-13!436;CL:0000048!6.48e-13!430;CL:0000034!1.69e-12!444;CL:0000066!1.74e-10!254;CL:0000220!2.02e-09!246;CL:0002321!7.01e-09!248;CL:0000055!1.96e-08!180;CL:0002320!3.90e-08!365;CL:0000451!1.54e-07!10;CL:0000134!1.93e-07!358;CL:0000057!2.93e-07!75;CL:0000680!3.45e-07!57;CL:0000056!3.45e-07!57;CL:0000355!3.45e-07!57;CL:0000222!6.23e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000451;1.54e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,8.76e-13,433;CL:0000048,3.31e-12,427;CL:0000034,8.45e-12,441;CL:0000066,1.50e-10,253;CL:0002321,7.27e-09,250;CL:0002320,1.23e-07,361;CL:0000451,1.54e-07,10;CL:0000057,4.68e-07,76;CL:0000680,4.89e-07,58;CL:0000056,4.89e-07,58;CL:0000355,4.89e-07,58;CL:0000134,5.75e-07,354;CL:0000222,7.03e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.13e-12!448;UBERON:0004120!1.13e-12!448;UBERON:0006603!1.13e-12!448;UBERON:0002204!6.78e-11!167;UBERON:0004119!1.17e-07!169;UBERON:0000925!1.17e-07!169;UBERON:0006595!1.17e-07!169;UBERON:0000486!1.67e-07!82;UBERON:0002384!1.84e-07!375;UBERON:0000914!6.40e-07!83;UBERON:0002329!6.40e-07!83;UBERON:0003077!6.40e-07!83;UBERON:0003059!6.40e-07!83;UBERON:0007282!6.40e-07!83;UBERON:0009618!6.40e-07!83;UBERON:0007285!6.40e-07!83;UBERON:0001007!6.62e-07!155;UBERON:0001555!6.62e-07!155;UBERON:0007026!6.62e-07!155;UBERON:0003104!7.26e-07!238;UBERON:0009142!7.26e-07!238 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.03e-10,167;UBERON:0003102,1.23e-07,99;UBERON:0004119,1.90e-07,160;UBERON:0000925,1.90e-07,160;UBERON:0006595,1.90e-07,160;UBERON:0000486,2.19e-07,83;UBERON:0002384,5.51e-07,371;UBERON:0001007,9.01e-07,145;UBERON:0001555,9.01e-07,145;UBERON:0007026,9.01e-07,145 | |||
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| ||
|short_description=p1@TXN | |||
}} | }} |
Latest revision as of 03:19, 20 September 2015
Short description: | p1@TXN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TXN_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -1bp_to_uc004bep.1, uc004beq.1_5end |
EntrezGene: | TXN |
HGNC: | 12435 |
UniProt: | P10599O60744 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 8.76e-13 | 433 |
multi fate stem cell | 3.31e-12 | 427 |
stem cell | 8.45e-12 | 441 |
epithelial cell | 1.50e-10 | 253 |
embryonic cell | 7.27e-09 | 250 |
connective tissue cell | 1.23e-07 | 361 |
dendritic cell | 1.54e-07 | 10 |
fibroblast | 4.68e-07 | 76 |
muscle precursor cell | 4.89e-07 | 58 |
myoblast | 4.89e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.89e-07 | 58 |
mesenchymal cell | 5.75e-07 | 354 |
mesodermal cell | 7.03e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.03e-10 | 167 |
surface structure | 1.23e-07 | 99 |
endoderm-derived structure | 1.90e-07 | 160 |
endoderm | 1.90e-07 | 160 |
presumptive endoderm | 1.90e-07 | 160 |
multilaminar epithelium | 2.19e-07 | 83 |
connective tissue | 5.51e-07 | 371 |
digestive system | 9.01e-07 | 145 |
digestive tract | 9.01e-07 | 145 |
primitive gut | 9.01e-07 | 145 |