FFCP PHASE1:Hg19::chr14:54423459..54423483,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652 | |EntrezGene=652 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1071 | |HGNC=1071 | ||
|TSSclassifier=strong | |||
|UniProt=P12644 | |UniProt=P12644 | ||
|association_with_transcript=45bp_to_ENST00000245451,ENST00000559087_5end | |association_with_transcript=45bp_to_ENST00000245451,ENST00000559087_5end | ||
|cluster_id=chr14:54423459..54423483,- | |||
|coexpression_cluster_id=C3433 | |||
|description=CAGE_peak_4_at_BMP4_5end | |description=CAGE_peak_4_at_BMP4_5end | ||
|id=chr14:54423459..54423483,- | |id=chr14:54423459..54423483,- | ||
|ontology_enrichment_celltype=CL:0000213!8.09e-21!57;CL:0000215!8.09e-21!57;CL:0002078!2.39e-17!44;CL:0000066!2.90e-15!254;CL:0002139!6.52e-14!24;CL:0000115!1.81e-13!35;CL:0000222!2.19e-11!119;CL:0000076!5.66e-11!62;CL:0000071!9.90e-11!18;CL:0002546!9.90e-11!18;CL:0002321!2.74e-08!248;CL:1000413!3.56e-08!9;CL:0000220!8.52e-08!246;CL:0000077!2.69e-07!19 | |ontology_enrichment_celltype=CL:0000213!8.09e-21!57;CL:0000215!8.09e-21!57;CL:0002078!2.39e-17!44;CL:0000066!2.90e-15!254;CL:0002139!6.52e-14!24;CL:0000115!1.81e-13!35;CL:0000222!2.19e-11!119;CL:0000076!5.66e-11!62;CL:0000071!9.90e-11!18;CL:0002546!9.90e-11!18;CL:0002321!2.74e-08!248;CL:1000413!3.56e-08!9;CL:0000220!8.52e-08!246;CL:0000077!2.69e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002139;4.97e-19;24!CL:0000115;9.97e-16;36!CL:0000213;4.06e-15;58!CL:0000215;4.06e-15;58!CL:0000071;4.21e-14;18!CL:0002078;6.61e-13;45!CL:1000413;3.60e-12;9!CL:0000077;5.49e-09;19!CL:0002544;1.25e-08;6!CL:0000076;5.52e-08;63!CL:0002543;1.80e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.01e-26,58;CL:0000215,2.01e-26,58;CL:0002078,3.04e-20,45;CL:0002139,3.09e-19,24;CL:0000115,9.85e-18,36;CL:0000066,1.00e-17,253;CL:0000071,3.44e-14,18;CL:0002546,3.44e-14,18;CL:0000222,1.80e-12,121;CL:1000413,4.13e-12,9;CL:0000076,4.76e-12,63;CL:0002321,8.75e-10,250;CL:0000077,5.22e-09,19;CL:0002544,1.28e-08,6;CL:0002543,1.25e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;4.21e-14;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.73e-20!312;UBERON:0000483!1.01e-19!309;UBERON:0004111!2.70e-19!241;UBERON:0000477!3.37e-19!286;UBERON:0000481!2.49e-15!347;UBERON:0000025!5.04e-14!194;UBERON:0006914!6.77e-14!25;UBERON:0003914!8.29e-14!118;UBERON:0000487!1.27e-12!22;UBERON:0003064!1.83e-11!37;UBERON:0001986!9.90e-11!18;UBERON:0004638!9.90e-11!18;UBERON:0004852!9.90e-11!18;UBERON:0009569!3.30e-10!113;UBERON:0002100!7.67e-10!216;UBERON:0000058!1.58e-09!26;UBERON:0000490!2.70e-09!138;UBERON:0003104!6.01e-09!238;UBERON:0009142!6.01e-09!238;UBERON:0001007!6.31e-09!155;UBERON:0001555!6.31e-09!155;UBERON:0007026!6.31e-09!155;UBERON:0000466!6.40e-09!126;UBERON:0005172!7.34e-09!55;UBERON:0005173!7.34e-09!55;UBERON:0001048!1.54e-08!168;UBERON:0001008!2.23e-08!45;UBERON:0000064!2.95e-08!219;UBERON:0003915!3.56e-08!9;UBERON:0004700!3.56e-08!9;UBERON:0001917!3.56e-08!9;UBERON:0005177!3.59e-08!107;UBERON:0000475!7.47e-08!365;UBERON:0006554!7.67e-08!44;UBERON:0004921!1.25e-07!129;UBERON:0004185!1.25e-07!129;UBERON:0000468!1.46e-07!659;UBERON:0002417!1.78e-07!61;UBERON:0000916!1.78e-07!61;UBERON:0005256!2.24e-07!143;UBERON:0005911!2.28e-07!82;UBERON:0002049!2.95e-07!79;UBERON:0007798!2.95e-07!79;UBERON:0004119!4.37e-07!169;UBERON:0000925!4.37e-07!169;UBERON:0006595!4.37e-07!169;UBERON:0003929!5.78e-07!54;UBERON:0005157!6.14e-07!51;UBERON:0000922!6.75e-07!612;UBERON:0004876!7.55e-07!20;UBERON:0003103!8.09e-07!69 | |ontology_enrichment_uberon=UBERON:0000119!3.73e-20!312;UBERON:0000483!1.01e-19!309;UBERON:0004111!2.70e-19!241;UBERON:0000477!3.37e-19!286;UBERON:0000481!2.49e-15!347;UBERON:0000025!5.04e-14!194;UBERON:0006914!6.77e-14!25;UBERON:0003914!8.29e-14!118;UBERON:0000487!1.27e-12!22;UBERON:0003064!1.83e-11!37;UBERON:0001986!9.90e-11!18;UBERON:0004638!9.90e-11!18;UBERON:0004852!9.90e-11!18;UBERON:0009569!3.30e-10!113;UBERON:0002100!7.67e-10!216;UBERON:0000058!1.58e-09!26;UBERON:0000490!2.70e-09!138;UBERON:0003104!6.01e-09!238;UBERON:0009142!6.01e-09!238;UBERON:0001007!6.31e-09!155;UBERON:0001555!6.31e-09!155;UBERON:0007026!6.31e-09!155;UBERON:0000466!6.40e-09!126;UBERON:0005172!7.34e-09!55;UBERON:0005173!7.34e-09!55;UBERON:0001048!1.54e-08!168;UBERON:0001008!2.23e-08!45;UBERON:0000064!2.95e-08!219;UBERON:0003915!3.56e-08!9;UBERON:0004700!3.56e-08!9;UBERON:0001917!3.56e-08!9;UBERON:0005177!3.59e-08!107;UBERON:0000475!7.47e-08!365;UBERON:0006554!7.67e-08!44;UBERON:0004921!1.25e-07!129;UBERON:0004185!1.25e-07!129;UBERON:0000468!1.46e-07!659;UBERON:0002417!1.78e-07!61;UBERON:0000916!1.78e-07!61;UBERON:0005256!2.24e-07!143;UBERON:0005911!2.28e-07!82;UBERON:0002049!2.95e-07!79;UBERON:0007798!2.95e-07!79;UBERON:0004119!4.37e-07!169;UBERON:0000925!4.37e-07!169;UBERON:0006595!4.37e-07!169;UBERON:0003929!5.78e-07!54;UBERON:0005157!6.14e-07!51;UBERON:0000922!6.75e-07!612;UBERON:0004876!7.55e-07!20;UBERON:0003103!8.09e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0006914;3.00e-16;25!UBERON:0000487;1.04e-15;22!UBERON:0004638;4.21e-14;18!UBERON:0001986;4.21e-14;18!UBERON:0004852;4.21e-14;18!UBERON:0000490;2.70e-13;33!UBERON:0003915;3.60e-12;9!UBERON:0004700;3.60e-12;9!UBERON:0001917;3.60e-12;9!UBERON:0005409;1.63e-08;22 | |||
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| ||
|short_description=p4@BMP4 | |short_description=p4@BMP4 | ||
}} | }} |
Latest revision as of 07:38, 20 September 2015
Short description: | p4@BMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BMP4_5end |
Coexpression cluster: | C3433_teratocarcinoma_Saos2_signet_rectal_tubular_gastric_Wilms |
Association with transcript: | 45bp_to_ENST00000245451, ENST00000559087_5end |
EntrezGene: | BMP4 |
HGNC: | 1071 |
UniProt: | P12644 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.01e-26 | 58 |
barrier cell | 2.01e-26 | 58 |
meso-epithelial cell | 3.04e-20 | 45 |
endothelial cell of vascular tree | 3.09e-19 | 24 |
endothelial cell | 9.85e-18 | 36 |
epithelial cell | 1.00e-17 | 253 |
blood vessel endothelial cell | 3.44e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.44e-14 | 18 |
mesodermal cell | 1.80e-12 | 121 |
endothelial cell of artery | 4.13e-12 | 9 |
squamous epithelial cell | 4.76e-12 | 63 |
embryonic cell | 8.75e-10 | 250 |
mesothelial cell | 5.22e-09 | 19 |
aortic endothelial cell | 1.28e-08 | 6 |
vein endothelial cell | 1.25e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous epithelium | 1.74e-16 | 25 |
simple squamous epithelium | 7.23e-16 | 22 |
blood vessel endothelium | 3.44e-14 | 18 |
endothelium | 3.44e-14 | 18 |
cardiovascular system endothelium | 3.44e-14 | 18 |
endothelial tube | 4.13e-12 | 9 |
arterial system endothelium | 4.13e-12 | 9 |
endothelium of artery | 4.13e-12 | 9 |
epithelial tube | 2.75e-11 | 117 |
intermediate mesoderm | 1.68e-10 | 28 |
anatomical conduit | 7.83e-10 | 240 |
unilaminar epithelium | 9.27e-10 | 148 |
subdivision of digestive tract | 2.33e-09 | 118 |
epithelium | 3.85e-09 | 306 |
cell layer | 7.86e-09 | 309 |
digestive system | 1.18e-08 | 145 |
digestive tract | 1.18e-08 | 145 |
primitive gut | 1.18e-08 | 145 |
endo-epithelium | 1.32e-08 | 82 |
duct | 1.42e-08 | 19 |
abdomen element | 3.75e-08 | 54 |
abdominal segment element | 3.75e-08 | 54 |
gut epithelium | 6.17e-08 | 54 |
subdivision of trunk | 1.21e-07 | 112 |
trunk | 1.23e-07 | 199 |
gastrointestinal system | 5.16e-07 | 25 |
trunk region element | 5.61e-07 | 101 |
epithelial sac | 7.26e-07 | 25 |
tube | 9.39e-07 | 192 |