FFCP PHASE1:Hg19::chr11:818906..818924,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57104 | |EntrezGene=57104 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30802 | |HGNC=30802 | ||
|TSSclassifier=strong | |||
|UniProt=Q96AD5 | |UniProt=Q96AD5 | ||
|association_with_transcript=4bp_to_ENST00000336615,uc001lrt.2_5end | |association_with_transcript=4bp_to_ENST00000336615,uc001lrt.2_5end | ||
|cluster_id=chr11:818906..818924,+ | |||
|coexpression_cluster_id=C29 | |coexpression_cluster_id=C29 | ||
|description=CAGE_peak_2_at_PNPLA2_5end | |description=CAGE_peak_2_at_PNPLA2_5end | ||
|id=chr11:818906..818924,+ | |id=chr11:818906..818924,+ | ||
|ontology_enrichment_celltype=CL:0000192!6.73e-13!42;CL:0000514!6.73e-13!42;CL:0000680!8.39e-13!57;CL:0000056!8.39e-13!57;CL:0000355!8.39e-13!57;CL:0000055!8.51e-13!180;CL:0000187!2.56e-12!54;CL:0000183!1.16e-11!59;CL:0000220!3.77e-11!246;CL:0000359!4.21e-11!32;CL:0002321!1.10e-10!248;CL:0000136!1.85e-10!15;CL:0000057!2.54e-09!75;CL:0000393!1.05e-08!60;CL:0000211!1.05e-08!60;CL:0000066!1.07e-07!254;CL:0000222!1.20e-07!119;CL:0002076!3.12e-07!43 | |ontology_enrichment_celltype=CL:0000192!6.73e-13!42;CL:0000514!6.73e-13!42;CL:0000680!8.39e-13!57;CL:0000056!8.39e-13!57;CL:0000355!8.39e-13!57;CL:0000055!8.51e-13!180;CL:0000187!2.56e-12!54;CL:0000183!1.16e-11!59;CL:0000220!3.77e-11!246;CL:0000359!4.21e-11!32;CL:0002321!1.10e-10!248;CL:0000136!1.85e-10!15;CL:0000057!2.54e-09!75;CL:0000393!1.05e-08!60;CL:0000211!1.05e-08!60;CL:0000066!1.07e-07!254;CL:0000222!1.20e-07!119;CL:0002076!3.12e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.54e-10;13!CL:0000359;2.04e-10;32!CL:0000192;5.99e-10;43!CL:0000187;2.98e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,3.69e-13,43;CL:0000514,3.69e-13,43;CL:0000680,3.74e-13,58;CL:0000056,3.74e-13,58;CL:0000355,3.74e-13,58;CL:0000187,1.23e-12,55;CL:0000359,4.38e-11,32;CL:0000136,5.26e-11,15;CL:0002321,5.62e-10,250;CL:0000393,2.51e-09,61;CL:0000211,2.51e-09,61;CL:0000057,5.41e-09,76;CL:0000222,1.73e-07,121;CL:0002076,2.81e-07,42;CL:0000066,6.11e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;5.99e-10;43!CL:0000355;2.79e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!1.21e-22!216;UBERON:0005256!8.03e-22!143;UBERON:0003104!7.00e-19!238;UBERON:0009142!7.00e-19!238;UBERON:0000486!6.76e-16!82;UBERON:0000914!6.86e-15!83;UBERON:0002329!6.86e-15!83;UBERON:0003077!6.86e-15!83;UBERON:0003059!6.86e-15!83;UBERON:0007282!6.86e-15!83;UBERON:0009618!6.86e-15!83;UBERON:0007285!6.86e-15!83;UBERON:0000475!6.40e-14!365;UBERON:0004290!2.40e-13!70;UBERON:0002385!3.32e-13!63;UBERON:0001015!3.32e-13!63;UBERON:0000383!3.32e-13!63;UBERON:0001134!5.51e-13!61;UBERON:0002036!5.51e-13!61;UBERON:0003082!5.51e-13!61;UBERON:0000481!1.78e-12!347;UBERON:0004119!3.45e-12!169;UBERON:0000925!3.45e-12!169;UBERON:0006595!3.45e-12!169;UBERON:0000468!4.01e-12!659;UBERON:0000926!7.17e-12!448;UBERON:0004120!7.17e-12!448;UBERON:0006603!7.17e-12!448;UBERON:0003102!9.99e-12!95;UBERON:0000467!3.32e-11!625;UBERON:0000480!5.99e-11!626;UBERON:0000490!3.41e-10!138;UBERON:0003914!7.82e-10!118;UBERON:0009569!4.08e-09!113;UBERON:0001007!6.53e-09!155;UBERON:0001555!6.53e-09!155;UBERON:0007026!6.53e-09!155;UBERON:0000466!6.33e-08!126;UBERON:0004573!2.96e-07!33;UBERON:0004571!2.96e-07!33;UBERON:0004923!3.00e-07!57;UBERON:0000923!6.43e-07!604;UBERON:0005291!6.43e-07!604;UBERON:0006598!6.43e-07!604;UBERON:0002532!6.43e-07!604;UBERON:0002050!6.50e-07!605;UBERON:0005423!6.50e-07!605 | |ontology_enrichment_uberon=UBERON:0002100!1.21e-22!216;UBERON:0005256!8.03e-22!143;UBERON:0003104!7.00e-19!238;UBERON:0009142!7.00e-19!238;UBERON:0000486!6.76e-16!82;UBERON:0000914!6.86e-15!83;UBERON:0002329!6.86e-15!83;UBERON:0003077!6.86e-15!83;UBERON:0003059!6.86e-15!83;UBERON:0007282!6.86e-15!83;UBERON:0009618!6.86e-15!83;UBERON:0007285!6.86e-15!83;UBERON:0000475!6.40e-14!365;UBERON:0004290!2.40e-13!70;UBERON:0002385!3.32e-13!63;UBERON:0001015!3.32e-13!63;UBERON:0000383!3.32e-13!63;UBERON:0001134!5.51e-13!61;UBERON:0002036!5.51e-13!61;UBERON:0003082!5.51e-13!61;UBERON:0000481!1.78e-12!347;UBERON:0004119!3.45e-12!169;UBERON:0000925!3.45e-12!169;UBERON:0006595!3.45e-12!169;UBERON:0000468!4.01e-12!659;UBERON:0000926!7.17e-12!448;UBERON:0004120!7.17e-12!448;UBERON:0006603!7.17e-12!448;UBERON:0003102!9.99e-12!95;UBERON:0000467!3.32e-11!625;UBERON:0000480!5.99e-11!626;UBERON:0000490!3.41e-10!138;UBERON:0003914!7.82e-10!118;UBERON:0009569!4.08e-09!113;UBERON:0001007!6.53e-09!155;UBERON:0001555!6.53e-09!155;UBERON:0007026!6.53e-09!155;UBERON:0000466!6.33e-08!126;UBERON:0004573!2.96e-07!33;UBERON:0004571!2.96e-07!33;UBERON:0004923!3.00e-07!57;UBERON:0000923!6.43e-07!604;UBERON:0005291!6.43e-07!604;UBERON:0006598!6.43e-07!604;UBERON:0002532!6.43e-07!604;UBERON:0002050!6.50e-07!605;UBERON:0005423!6.50e-07!605 | ||
|ontology_enrichment_uberon_v019= | |||
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| ||
|short_description=p2@PNPLA2 | |short_description=p2@PNPLA2 | ||
}} | }} |
Latest revision as of 17:29, 24 September 2015
Short description: | p2@PNPLA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PNPLA2_5end |
Coexpression cluster: | C29_mature_adipose_Adipocyte_breast_Lymphatic_vein_heart |
Association with transcript: | 4bp_to_ENST00000336615, uc001lrt.2_5end |
EntrezGene: | PNPLA2 |
HGNC: | 30802 |
UniProt: | Q96AD5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 3.69e-13 | 43 |
smooth muscle myoblast | 3.69e-13 | 43 |
muscle precursor cell | 3.74e-13 | 58 |
myoblast | 3.74e-13 | 58 |
multi-potent skeletal muscle stem cell | 3.74e-13 | 58 |
muscle cell | 1.23e-12 | 55 |
vascular associated smooth muscle cell | 4.38e-11 | 32 |
fat cell | 5.26e-11 | 15 |
embryonic cell | 5.62e-10 | 250 |
electrically responsive cell | 2.51e-09 | 61 |
electrically active cell | 2.51e-09 | 61 |
fibroblast | 5.41e-09 | 76 |
mesodermal cell | 1.73e-07 | 121 |
endo-epithelial cell | 2.81e-07 | 42 |
epithelial cell | 6.11e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 9.83e-20 | 160 |
entire embryonic mesenchyme | 9.83e-20 | 160 |
trunk | 1.14e-19 | 199 |
trunk mesenchyme | 4.68e-18 | 122 |
multilaminar epithelium | 1.27e-15 | 83 |
surface structure | 1.27e-13 | 99 |
muscle tissue | 1.34e-13 | 64 |
musculature | 1.34e-13 | 64 |
musculature of body | 1.34e-13 | 64 |
skeletal muscle tissue | 2.32e-13 | 62 |
striated muscle tissue | 2.32e-13 | 62 |
myotome | 2.32e-13 | 62 |
endoderm-derived structure | 2.95e-13 | 160 |
endoderm | 2.95e-13 | 160 |
presumptive endoderm | 2.95e-13 | 160 |
somite | 4.22e-13 | 71 |
presomitic mesoderm | 4.22e-13 | 71 |
presumptive segmental plate | 4.22e-13 | 71 |
dermomyotome | 4.22e-13 | 71 |
trunk paraxial mesoderm | 4.22e-13 | 71 |
epithelial vesicle | 4.93e-13 | 78 |
paraxial mesoderm | 1.47e-12 | 72 |
presumptive paraxial mesoderm | 1.47e-12 | 72 |
dense mesenchyme tissue | 2.12e-12 | 73 |
unilaminar epithelium | 9.81e-11 | 148 |
epithelial tube | 1.15e-09 | 117 |
digestive system | 1.55e-09 | 145 |
digestive tract | 1.55e-09 | 145 |
primitive gut | 1.55e-09 | 145 |
subdivision of trunk | 7.08e-09 | 112 |
organ component layer | 6.40e-08 | 66 |
systemic artery | 3.21e-07 | 33 |
systemic arterial system | 3.21e-07 | 33 |