FFCP PHASE1:Hg19::chr3:129279845..129279886,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23129 | |EntrezGene=23129 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9107 | |HGNC=9107 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-60bp_to_ENST00000508630_5end | |association_with_transcript=-60bp_to_ENST00000508630_5end | ||
|cluster_id=chr3:129279845..129279886,- | |||
|coexpression_cluster_id=C2718 | |||
|description=CAGE_peak_4_at_PLXND1_5end | |description=CAGE_peak_4_at_PLXND1_5end | ||
|id=chr3:129279845..129279886,- | |id=chr3:129279845..129279886,- | ||
|ontology_enrichment_celltype=CL:0000055!4.29e-33!180;CL:0000057!1.37e-23!75;CL:0002620!1.07e-13!23;CL:0000680!6.45e-11!57;CL:0000056!6.45e-11!57;CL:0000355!6.45e-11!57;CL:0000183!8.37e-11!59;CL:0000187!9.06e-10!54;CL:0000393!1.34e-07!60;CL:0000211!1.34e-07!60;CL:0000048!1.60e-07!430;CL:0000192!3.99e-07!42;CL:0000514!3.99e-07!42 | |ontology_enrichment_celltype=CL:0000055!4.29e-33!180;CL:0000057!1.37e-23!75;CL:0002620!1.07e-13!23;CL:0000680!6.45e-11!57;CL:0000056!6.45e-11!57;CL:0000355!6.45e-11!57;CL:0000183!8.37e-11!59;CL:0000187!9.06e-10!54;CL:0000393!1.34e-07!60;CL:0000211!1.34e-07!60;CL:0000048!1.60e-07!430;CL:0000192!3.99e-07!42;CL:0000514!3.99e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.00e-20;23!CL:0000057;4.53e-13;73!CL:0002320;2.31e-09;188!CL:0002559;6.75e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.81e-30,76;CL:0002620,2.38e-20,23;CL:0000048,1.25e-12,427;CL:0000723,6.29e-12,433;CL:0000034,4.93e-11,441;CL:0002320,4.22e-09,361;CL:0000680,3.22e-08,58;CL:0000056,3.22e-08,58;CL:0000355,3.22e-08,58;CL:0000134,5.62e-07,354;CL:0000187,6.69e-07,55;CL:0002559,7.22e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;6.79e-07;5!DOID:450;6.79e-07;5!DOID:66;6.79e-07;5!DOID:423;6.79e-07;5!DOID:0080000;6.79e-07;5!DOID:11722;6.79e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.58e-07,5;DOID:450,6.58e-07,5;DOID:66,6.58e-07,5;DOID:423,6.58e-07,5;DOID:0080000,6.58e-07,5;DOID:11722,6.58e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-16!83;UBERON:0002329!1.01e-16!83;UBERON:0003077!1.01e-16!83;UBERON:0003059!1.01e-16!83;UBERON:0007282!1.01e-16!83;UBERON:0009618!1.01e-16!83;UBERON:0007285!1.01e-16!83;UBERON:0004290!1.77e-14!70;UBERON:0000475!8.16e-13!365;UBERON:0005256!5.03e-12!143;UBERON:0000486!6.67e-11!82;UBERON:0002199!1.66e-10!45;UBERON:0002416!1.66e-10!45;UBERON:0002385!3.07e-10!63;UBERON:0001015!3.07e-10!63;UBERON:0000383!3.07e-10!63;UBERON:0001134!3.64e-10!61;UBERON:0002036!3.64e-10!61;UBERON:0003082!3.64e-10!61;UBERON:0002097!1.32e-09!40;UBERON:0003102!1.78e-08!95;UBERON:0002100!5.92e-08!216;UBERON:0000481!3.27e-07!347;UBERON:0002067!6.84e-07!9;UBERON:0004016!6.84e-07!9;UBERON:0010083!6.84e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;8.15e-13;41!UBERON:0002199;2.55e-12;46!UBERON:0002416;2.55e-12;46!UBERON:0003102;2.14e-11;50!UBERON:0002067;1.30e-09;9!UBERON:0002384;3.40e-08;198!UBERON:0002073;6.75e-07;5!UBERON:0001434;8.94e-07;36!UBERON:0000075;9.11e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,7.19e-18,46;UBERON:0002416,7.19e-18,46;UBERON:0002097,1.07e-16,41;UBERON:0003102,2.06e-14,99;UBERON:0007524,5.29e-13,73;UBERON:0002329,7.72e-13,71;UBERON:0003059,7.72e-13,71;UBERON:0007282,7.72e-13,71;UBERON:0004290,7.72e-13,71;UBERON:0009618,7.72e-13,71;UBERON:0003077,1.75e-12,72;UBERON:0007285,1.75e-12,72;UBERON:0007503,8.04e-12,78;UBERON:0000486,6.26e-10,83;UBERON:0002067,1.30e-09,9;UBERON:0004016,1.30e-09,9;UBERON:0010083,1.30e-09,9;UBERON:0002384,1.44e-09,371;UBERON:0003104,3.48e-09,160;UBERON:0009142,3.48e-09,160;UBERON:0005256,1.38e-08,122;UBERON:0001134,1.08e-07,62;UBERON:0002036,1.08e-07,62;UBERON:0003082,1.08e-07,62;UBERON:0002385,3.48e-07,64;UBERON:0001015,3.48e-07,64;UBERON:0000383,3.48e-07,64;UBERON:0000075,4.55e-07,16;UBERON:0002073,7.22e-07,5;UBERON:0005086,7.22e-07,5 | |||
|phase1_expression=0.908391896352783,1.2846031433459,3.80576891059122,2.00146596706261,2.23480547213644,1.74467704820074,7.59899634504932,3.79031924056099,7.83556884599516,0,0,0,0,2.97039247104112,1.98838425436749,1.34465029290355,0,0,0,0.984968464614303,0.612002073732759,0.313454721478088,0.572471974262113,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0.293600439334847,0,0,0,0.223915474239924,0,0,0.145398238779565,0.377875943688809,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1329612839546,0,0.895037932904712,4.3372698286148,4.51204119572301,1.88300474649071,6.36228757640879,2.43317435151318,0.756278537312543,0,0.43917392846563,0.392937226493138,0,0,0,0.348259474598534,0.132957960518865,0.238490624305342,1.14398982156026,0.371457501329565,0.39752481473341,0,0,0,0,0,0,0,0.71153252537342,0.66944122552934,0,0,0,0,0,0.535798369704479,0,0.563057402416611,0,0,0.183201743930407,0,0,0.436094052142534,1.49091585508596,1.51956613997496,0.397227542439656,3.72887606973458,0.354668382198357,2.80338800071154,1.06748995729705,0.49333509683432,3.42332138939743,0.404132016209064,0.326923806226917,3.48122083583342,0.576175924479999,3.51482147750695,7.17968176709737,6.27519003698894,5.97794722207204,2.23125547423153,2.91371299862637,2.52811452064047,9.39109187772509,4.91337269247072,8.88601718111583,4.75201142912821,2.47266929278557,10.9219363432563,5.74894513452991,5.05008341862199,3.00284447692714,5.81834642516784,6.58466431321257,2.45190236639216,1.65261864797256,0.226864366320042,10.5839885056429,10.4643120521098,10.8085269591377,7.50227740211006,5.77094163735258,7.9868567414145,8.18914167858995,7.42615861861571,7.89239741805709,4.79624171063818,9.75728925608373,8.24394889775941,7.4552014428489,5.23910910783729,3.73033303083073,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,15.6449532329816,6.43240938192885,19.3388889893473,7.42988684851167,6.49691533502627,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,2.80483547606892,1.2347220339942,13.2307840246988,0,0,0.590789906681404,0,0,0.514703430895577,0,0,0,0,2.93227474779292,8.31947828223663,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0.205654985406647,0,0,3.36393253036082,0,2.27348686044945,0.775630294546667,28.6125156681506,0,4.78688609852767,4.16029747645464,8.74505072491283,2.83698264046557,4.26275486425759,3.86040582876998,33.099917928878,5.76268235746538,1.95441710576241,1.06617584622764,1.58390374586686,0.301439377059586,0,0.199945982364114,0,0,0,4.0736225433569,2.29723871668228,9.98458335285029,1.59259437334337,2.67119219315498,4.65558504423729,0,0.197030760201927,0,0.256686072559497,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,2.69921281782108,12.5042630264919,2.98391526069709,13.1021642764408,9.63516539504674,6.78120384645919,6.91134348457008,6.92176029373754,2.27407504055985,0,1.99267679560631,1.10621501125022,3.0409265063829,21.9297296358269,5.49029478097369,0,0,0,0,0,0,1.48864684691266,1.2276957863045,1.12264037773229,2.69092213436972,4.60536524160033,0.482561763430822,0,0,0.177561725313127,1.06765302817952,1.03850885836724,0.581051892299796,0,0,0,1.26295892981067,0.910455840033585,1.31124414959424,0,0.231046011313244,3.92174884588428,0,0.316654886678627,0,0,0.647747748306418,0,1.35473218771926,1.00337954770971,0,0,2.0148727924996,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.721287081534056,2.01452822600355,4.1254749960294,0,0,0,1.7400729292582,2.31072925671967,1.07452572308291,0.413509717453592,1.50388342815583,1.59518363305651,0.93749290157711,0.445160178233687,0,0,0,0,1.39453664789186,1.5740617341532,0.6970372701606,0.616067160352178,1.06461206063404,0,1.11194531462352,0.286249773483982,2.232950216158,2.53103539774981,1.5250415513906,4.35026245229268,1.28381696410176,1.27281299170375,1.56989728039846,1.61885211824983,1.92175920815238,0.589062011728432,0.606547444719948,1.58510321173008,0.421258456238981,1.46290121726877,0.974853958525138,0,2.45699840534374,0.848432591722276,0,1.65409603063837,1.32687795048244,0.876901770507525,1.15755106853338,1.9676842561399,1.01455188481352,0.30982349809975,0.845086807596724,1.57752487424457,1.47373561519682,0.35667105148125,2.83808851256478,0.422215270595328,0.658589785919804,9.86630251790859,10.1481068871045,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0.371606350251437,0.432807638929335,0,0,0,0.191505370132367,0,0,0,5.02116293873023,0,0,0,0,0,0,0.343505344755765,0.307240764308458,0,0,0,0,0,0.270455678475983,0.33307196799782,0,0,0.586032717087576,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0.796991953004279,0.276283915531148,0,0,0,1.55519793830904,0,0,0,0.0986434056369336,0,1.11136990144637,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0,0,0,0.347249989866585,1.77148277162768,0.12059643862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| ||
|short_description=p4@PLXND1 | |short_description=p4@PLXND1 | ||
}} | }} |
Latest revision as of 17:45, 24 September 2015
Short description: | p4@PLXND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PLXND1_5end |
Coexpression cluster: | C2718_Mesenchymal_glioblastoma_Cardiac_Pericytes_Trabecular_Olfactory_Hair |
Association with transcript: | -60bp_to_ENST00000508630_5end |
EntrezGene: | PLXND1 |
HGNC: | 9107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.81e-30 | 76 |
skin fibroblast | 2.38e-20 | 23 |
multi fate stem cell | 1.25e-12 | 427 |
somatic stem cell | 6.29e-12 | 433 |
stem cell | 4.93e-11 | 441 |
connective tissue cell | 4.22e-09 | 361 |
muscle precursor cell | 3.22e-08 | 58 |
myoblast | 3.22e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.22e-08 | 58 |
mesenchymal cell | 5.62e-07 | 354 |
muscle cell | 6.69e-07 | 55 |
hair follicle cell | 7.22e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
integument | 7.19e-18 | 46 |
integumental system | 7.19e-18 | 46 |
skin of body | 1.07e-16 | 41 |
surface structure | 2.06e-14 | 99 |
dense mesenchyme tissue | 5.29e-13 | 73 |
somite | 7.72e-13 | 71 |
presomitic mesoderm | 7.72e-13 | 71 |
presumptive segmental plate | 7.72e-13 | 71 |
dermomyotome | 7.72e-13 | 71 |
trunk paraxial mesoderm | 7.72e-13 | 71 |
paraxial mesoderm | 1.75e-12 | 72 |
presumptive paraxial mesoderm | 1.75e-12 | 72 |
epithelial vesicle | 8.04e-12 | 78 |
multilaminar epithelium | 6.26e-10 | 83 |
dermis | 1.30e-09 | 9 |
dermatome | 1.30e-09 | 9 |
future dermis | 1.30e-09 | 9 |
connective tissue | 1.44e-09 | 371 |
mesenchyme | 3.48e-09 | 160 |
entire embryonic mesenchyme | 3.48e-09 | 160 |
trunk mesenchyme | 1.38e-08 | 122 |
skeletal muscle tissue | 1.08e-07 | 62 |
striated muscle tissue | 1.08e-07 | 62 |
myotome | 1.08e-07 | 62 |
muscle tissue | 3.48e-07 | 64 |
musculature | 3.48e-07 | 64 |
musculature of body | 3.48e-07 | 64 |
subdivision of skeletal system | 4.55e-07 | 16 |
hair follicle | 7.22e-07 | 5 |
hair follicle placode | 7.22e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.58e-07 | 5 |
myotonic disease | 6.58e-07 | 5 |
muscle tissue disease | 6.58e-07 | 5 |
myopathy | 6.58e-07 | 5 |
muscular disease | 6.58e-07 | 5 |
myotonic dystrophy | 6.58e-07 | 5 |