FFCP PHASE1:Hg19::chr3:14212107..14212119,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7508 | |EntrezGene=7508 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12816 | |HGNC=12816 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000452172_5end | |association_with_transcript=0bp_to_ENST00000452172_5end | ||
|cluster_id=chr3:14212107..14212119,- | |||
|description=CAGE_peak_2_at_XPC_5end | |description=CAGE_peak_2_at_XPC_5end | ||
|id=chr3:14212107..14212119,- | |id=chr3:14212107..14212119,- | ||
|ontology_enrichment_celltype=CL:0002620!8.35e-26!23;CL:0000057!1.12e-22!75;CL:0000055!1.16e-18!180;CL:0002551!5.18e-10!6;CL:0002539!7.64e-10!10;CL:0000144!5.61e-08!625;CL:0000359!7.63e-07!32;CL:0002371!7.88e-07!591 | |ontology_enrichment_celltype=CL:0002620!8.35e-26!23;CL:0000057!1.12e-22!75;CL:0000055!1.16e-18!180;CL:0002551!5.18e-10!6;CL:0002539!7.64e-10!10;CL:0000144!5.61e-08!625;CL:0000359!7.63e-07!32;CL:0002371!7.88e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0002620;5.21e-31;23!CL:0002551;1.29e-21;6!CL:0002573;9.36e-11;2!CL:0000057;8.14e-10;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.19e-31,23;CL:0002551,8.48e-22,6;CL:0000057,9.34e-19,76;CL:0002573,7.41e-11,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.01e-11!14;DOID:17!3.35e-07!5;DOID:450!3.35e-07!5;DOID:66!3.35e-07!5;DOID:423!3.35e-07!5;DOID:0080000!3.35e-07!5;DOID:11722!3.35e-07!5 | |ontology_enrichment_disease=DOID:2394!1.01e-11!14;DOID:17!3.35e-07!5;DOID:450!3.35e-07!5;DOID:66!3.35e-07!5;DOID:423!3.35e-07!5;DOID:0080000!3.35e-07!5;DOID:11722!3.35e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:2394;8.70e-23;14!DOID:120;7.70e-11;27!DOID:193;5.89e-10;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.74e-23,14;DOID:120,5.12e-11,27;DOID:193,4.05e-10,29;DOID:17,9.77e-07,5;DOID:450,9.77e-07,5;DOID:66,9.77e-07,5;DOID:423,9.77e-07,5;DOID:0080000,9.77e-07,5;DOID:11722,9.77e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002097!5.52e-21!40;UBERON:0002199!6.06e-21!45;UBERON:0002416!6.06e-21!45;UBERON:0003102!1.30e-16!95;UBERON:0004573!2.37e-10!33;UBERON:0004571!2.37e-10!33;UBERON:0004237!7.64e-10!10;UBERON:0004695!7.64e-10!10;UBERON:0002111!7.64e-10!10;UBERON:0004178!7.64e-10!10;UBERON:0000914!1.19e-08!83;UBERON:0002329!1.19e-08!83;UBERON:0003077!1.19e-08!83;UBERON:0003059!1.19e-08!83;UBERON:0007282!1.19e-08!83;UBERON:0009618!1.19e-08!83;UBERON:0007285!1.19e-08!83;UBERON:0000947!1.57e-08!21;UBERON:0010191!1.57e-08!21;UBERON:0000992!2.12e-08!13;UBERON:0002118!6.59e-08!5;UBERON:0004532!6.59e-08!5;UBERON:0001637!7.48e-08!42;UBERON:0003509!7.48e-08!42;UBERON:0004572!7.48e-08!42;UBERON:0004290!1.04e-07!70;UBERON:0000486!2.63e-07!82;UBERON:0002119!5.52e-07!4;UBERON:0004531!5.52e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;7.92e-20;46!UBERON:0002416;7.92e-20;46!UBERON:0002097;2.35e-17;41!UBERON:0000992;7.64e-16;13!UBERON:0002119;1.51e-14;4!UBERON:0003102;2.02e-14;50!UBERON:0002067;3.58e-14;9!UBERON:0000991;7.61e-12;21!UBERON:0002118;4.67e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.42e-26,41;UBERON:0002199,3.60e-25,46;UBERON:0002416,3.60e-25,46;UBERON:0000992,4.51e-16,13;UBERON:0003102,1.43e-15,99;UBERON:0002119,1.47e-14,4;UBERON:0002067,2.73e-14,9;UBERON:0004016,2.73e-14,9;UBERON:0010083,2.73e-14,9;UBERON:0000991,5.31e-12,21;UBERON:0009196,5.31e-12,21;UBERON:0009117,5.31e-12,21;UBERON:0005564,5.31e-12,21;UBERON:0004176,2.23e-11,22;UBERON:0002118,2.39e-11,5 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,4.30117297553062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.926864265692532,2.29469296599051,0,0,0,0,0,0,0,0,0,22.4948574560445,3.43376084513353,7.98660550162229,2.24173020827702,4.11020745253177,6.31304483035713,1.96631129383148,2.24569588380383,0.122834317311768,1.23990937410919,0,0,0,0,1.17835279767846,0.750711119231785,5.26421819419948,0,0,0,0,0.358779271377724,0.427114777637135,3.17897851739343,1.20036438433761,1.95799805553034,4.89517026086695,0.37223371266318,1.5189869901714,0.389748020644795,3.02920529092937,2.30124746605748,1.13152239773168,0.710019185033229,0.10075209822764,1.52604533079439,0.193260853163297,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0.548751427043128,1.1240175325762,1.20634766893957,0,11.4032906858614,0,0,0,0,0,0,0,0,0,0,1.17002132569619,0.148631162288728,0,0.16798212819886,0.141775097242386,0.447792613514241,0.581267877027924,0,0.492663237895943,0,0.414656231081544,0,0,0.126995788584338,0,0,0,0.308482478109971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.315404830067869,0.234282829985426,0,0,0,0,0,0.60818530127658,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0.306923946576125,0,0.384417447767103,0,0,0,0.925258162815933,2.48586415438378,0.739144404124282,0.519254429183621,0.348631135379878,0,0.200506470303285,0.276242966807689,0,0.182091168006717,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,1.30012049207304,3.21367859688319,3.48014585851639,0,0,0.137836572484531,0,0,0,0.178064071293475,0.495854746082934,0.576570202095319,0.127612712494584,0,1.39453664789186,3.1481234683064,0.6970372701606,0.308033580176089,0,0.869932992075073,1.48259375283136,0.429374660225974,0,0,0,0,0,0.318203247925937,0,0,0,0,0.808729926293264,0,0,0,0.974853958525138,0,0.409499734223957,0,0,0,0,0.876901770507525,0,0,0,0,0.281695602532241,0,0,0,7.09522128141196,0,0.329294892959902,0,1.04980416073495,0.384888450902048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,1.00177834520615,0,0,0,0,0,0,0,1.86623752597084,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0.664653872707185,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.0969890164884194,0.176512253383001,0.677942222341597,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0.895528817321244,5.84283274618061,1.66441758450784,0,0,0,1.14420034198462,0,0.310874401165561,0.147855149989634,6.3718706865481,2.69881867298163,2.48420731002015,1.24411862352257,2.92425886013794,1.5652351854352,0,0,0.813741466409323,1.45478927362048,1.71856891267982,3.24823631914946,1.99047944349308,0,0,1.01024846629776,0,0,0.214441591374926,5.21988583930423,0.226705925512272,0,0.244736704506468,0,0,0,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,1.88719130227076,0,0,0.425149840203366,0,0.558644917973244,1.59002175326709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,3.16568239847317,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53831600949735,2.04512171421978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,4.30117297553062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.926864265692532,2.29469296599051,0,0,0,0,0,0,0,0,0,22.4948574560445,3.43376084513353,7.98660550162229,2.24173020827702,4.11020745253177,6.31304483035713,1.96631129383148,2.24569588380383,0.122834317311768,1.23990937410919,0,0,0,0,1.17835279767846,0.750711119231785,5.26421819419948,0,0,0,0,0.358779271377724,0.427114777637135,3.17897851739343,1.20036438433761,1.95799805553034,4.89517026086695,0.37223371266318,1.5189869901714,0.389748020644795,3.02920529092937,2.30124746605748,1.13152239773168,0.710019185033229,0.10075209822764,1.52604533079439,0.193260853163297,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0.548751427043128,1.1240175325762,1.20634766893957,0,11.4032906858614,0,0,0,0,0,0,0,0,0,0,1.17002132569619,0.148631162288728,0,0.16798212819886,0.141775097242386,0.447792613514241,0.581267877027924,0,0.492663237895943,0,0.414656231081544,0,0,0.126995788584338,0,0,0,0.308482478109971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.315404830067869,0.234282829985426,0,0,0,0,0,0.60818530127658,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0.306923946576125,0,0.384417447767103,0,0,0,0.925258162815933,2.48586415438378,0.739144404124282,0.519254429183621,0.348631135379878,0,0.200506470303285,0.276242966807689,0,0.182091168006717,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,1.30012049207304,3.21367859688319,3.48014585851639,0,0,0.137836572484531,0,0,0,0.178064071293475,0.495854746082934,0.576570202095319,0.127612712494584,0,1.39453664789186,3.1481234683064,0.6970372701606,0.308033580176089,0,0.869932992075073,1.48259375283136,0.429374660225974,0,0,0,0,0,0.318203247925937,0,0,0,0,0.808729926293264,0,0,0,0.974853958525138,0,0.409499734223957,0,0,0,0,0.876901770507525,0,0,0,0,0.281695602532241,0,0,0,7.09522128141196,0,0.329294892959902,0,1.04980416073495,0.384888450902048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,1.00177834520615,0,0,0,0,0,0,0,1.86623752597084,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0.664653872707185,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.0969890164884194,0.176512253383001,0.677942222341597,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0.895528817321244,5.84283274618061,1.66441758450784,0,0,0,1.14420034198462,0,0.310874401165561,0.147855149989634,6.3718706865481,2.69881867298163,2.48420731002015,1.24411862352257,2.92425886013794,1.5652351854352,0,0,0.813741466409323,1.45478927362048,1.71856891267982,3.24823631914946,1.99047944349308,0,0,1.01024846629776,0,0,0.214441591374926,5.21988583930423,0.226705925512272,0,0.244736704506468,0,0,0,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,1.88719130227076,0,0,0.425149840203366,0,0.558644917973244,1.59002175326709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,3.16568239847317,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53831600949735,2.04512171421978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@XPC | |short_description=p2@XPC | ||
}} | }} |
Latest revision as of 04:31, 25 September 2015
Short description: | p2@XPC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_XPC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000452172_5end |
EntrezGene: | XPC |
HGNC: | 12816 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.19e-31 | 23 |
fibroblast of dermis | 8.48e-22 | 6 |
fibroblast | 9.34e-19 | 76 |
Schwann cell | 7.41e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
skin of body | 8.42e-26 | 41 |
integument | 3.60e-25 | 46 |
integumental system | 3.60e-25 | 46 |
female gonad | 4.51e-16 | 13 |
surface structure | 1.43e-15 | 99 |
left ovary | 1.47e-14 | 4 |
dermis | 2.73e-14 | 9 |
dermatome | 2.73e-14 | 9 |
future dermis | 2.73e-14 | 9 |
gonad | 5.31e-12 | 21 |
indifferent external genitalia | 5.31e-12 | 21 |
indifferent gonad | 5.31e-12 | 21 |
gonad primordium | 5.31e-12 | 21 |
external genitalia | 2.23e-11 | 22 |
right ovary | 2.39e-11 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.74e-23 | 14 |
female reproductive organ cancer | 5.12e-11 | 27 |
reproductive organ cancer | 4.05e-10 | 29 |
musculoskeletal system disease | 9.77e-07 | 5 |
myotonic disease | 9.77e-07 | 5 |
muscle tissue disease | 9.77e-07 | 5 |
myopathy | 9.77e-07 | 5 |
muscular disease | 9.77e-07 | 5 |
myotonic dystrophy | 9.77e-07 | 5 |