FFCP PHASE1:Mm9::chr3:52543648..52543658,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=329639 | |EntrezGene=329639 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=18 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_NR_038079,uc008pek.1_5end | |association_with_transcript=2bp_to_NR_038079,uc008pek.1_5end | ||
|cluster_id=chr3:52543648..52543658,+ | |||
|description=CAGE_peak_1_at_Gm2447_5end | |description=CAGE_peak_1_at_Gm2447_5end | ||
|id=chr3:52543648..52543658,+ | |id=chr3:52543648..52543658,+ | ||
|ontology_enrichment_celltype=CL:0000553!3.09e-14!6;CL:0000556!3.09e-14!6;CL:0000050!1.52e-09!9;CL:0000414!7.92e-08!11 | |ontology_enrichment_celltype=CL:0000553!3.09e-14!6;CL:0000556!3.09e-14!6;CL:0000050!1.52e-09!9;CL:0000414!7.92e-08!11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000553,8.13e-23,6;CL:0000556,8.13e-23,6;CL:0000945,1.33e-15,1;CL:0000236,1.33e-15,1;CL:0000826,1.33e-15,1;CL:0000050,1.69e-15,9;CL:0000839,5.70e-11,13;CL:0002031,6.10e-10,25;CL:0000763,4.76e-09,16;CL:0000988,7.09e-08,32;CL:0002032,7.09e-08,32;CL:0000037,7.09e-08,32;CL:0000837,7.09e-08,32;CL:0000049,9.99e-08,19 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002106!3.87e-08!6;UBERON:0004457!3.87e-08!6;UBERON:0000042!3.87e-08!6;UBERON:0004854!3.87e-08!6;UBERON:0009034!3.87e-08!6;UBERON:0002095!3.87e-08!6;UBERON:0004782!3.87e-08!6;UBERON:0003281!3.87e-08!6;UBERON:0009664!3.87e-08!6;UBERON:0002296!3.87e-08!6;UBERON:0005602!3.87e-08!6;UBERON:0001179!3.87e-08!6;UBERON:0006293!3.87e-08!6;UBERON:0003887!4.20e-08!10;UBERON:0002465!1.53e-07!3;UBERON:0002193!1.97e-07!48;UBERON:0000464!4.40e-07!57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.49e-10,6;UBERON:0004457,1.49e-10,6;UBERON:0000042,1.49e-10,6;UBERON:0004854,1.49e-10,6;UBERON:0009034,1.49e-10,6;UBERON:0002095,1.49e-10,6;UBERON:0004782,1.49e-10,6;UBERON:0003281,1.49e-10,6;UBERON:0009664,1.49e-10,6;UBERON:0002296,1.49e-10,6;UBERON:0005602,1.49e-10,6;UBERON:0001179,1.49e-10,6;UBERON:0006293,1.49e-10,6;UBERON:0002371,4.76e-09,16;UBERON:0002390,1.53e-08,45;UBERON:0003061,1.53e-08,45;UBERON:0002193,4.96e-08,48;UBERON:0002405,4.96e-08,48;UBERON:0001474,9.24e-07,22;UBERON:0004765,9.24e-07,22;UBERON:0001434,9.24e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607425802169478,0,5.36285681109004,4.9361196098066,3.39511721438424,0,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17447824240415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.776813650941515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482443521363367,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188368457004691,1.0935538217682,2.28778173206523,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607425802169478,0,5.36285681109004,4.9361196098066,3.39511721438424,0,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17447824240415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.776813650941515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482443521363367,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188368457004691,1.0935538217682,2.28778173206523,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@Gm2447 | |short_description=p1@Gm2447 | ||
}} | }} |
Latest revision as of 14:13, 25 September 2015
Short description: | p1@Gm2447 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm2447_5end |
Coexpression cluster: | MCL_coexpression_mm9:18 |
Association with transcript: | 2bp_to_NR_038079, uc008pek.1_5end |
EntrezGene: | Gm2447 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
megakaryocyte progenitor cell | 8.13e-23 | 6 |
megakaryocyte | 8.13e-23 | 6 |
lymphocyte of B lineage | 1.33e-15 | 1 |
B cell | 1.33e-15 | 1 |
pro-B cell | 1.33e-15 | 1 |
megakaryocyte-erythroid progenitor cell | 1.69e-15 | 9 |
myeloid lineage restricted progenitor cell | 5.70e-11 | 13 |
hematopoietic lineage restricted progenitor cell | 6.10e-10 | 25 |
myeloid cell | 4.76e-09 | 16 |
hematopoietic cell | 7.09e-08 | 32 |
hematopoietic oligopotent progenitor cell | 7.09e-08 | 32 |
hematopoietic stem cell | 7.09e-08 | 32 |
hematopoietic multipotent progenitor cell | 7.09e-08 | 32 |
common myeloid progenitor | 9.99e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.49e-10 | 6 |
cavity lining | 1.49e-10 | 6 |
serous membrane | 1.49e-10 | 6 |
gastrointestinal system mesentery | 1.49e-10 | 6 |
stomach region | 1.49e-10 | 6 |
mesentery | 1.49e-10 | 6 |
gastrointestinal system serosa | 1.49e-10 | 6 |
mesentery of stomach | 1.49e-10 | 6 |
gut mesentery | 1.49e-10 | 6 |
dorsal mesentery | 1.49e-10 | 6 |
dorsal mesogastrium | 1.49e-10 | 6 |
peritoneal cavity | 1.49e-10 | 6 |
spleen primordium | 1.49e-10 | 6 |
bone marrow | 4.76e-09 | 16 |
hematopoietic system | 1.53e-08 | 45 |
blood island | 1.53e-08 | 45 |
hemolymphoid system | 4.96e-08 | 48 |
immune system | 4.96e-08 | 48 |
bone element | 9.24e-07 | 22 |
skeletal element | 9.24e-07 | 22 |
skeletal system | 9.24e-07 | 22 |