FFCP PHASE1:Mm9::chr19:4097678..4097713,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52004 | |EntrezGene=52004 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3 | |MCL_coexpression_id=3 | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=277bp_to_ENSMUST00000172914_5end | |association_with_transcript=277bp_to_ENSMUST00000172914_5end | ||
|cluster_id=chr19:4097678..4097713,+ | |||
|description=CAGE_peak_5_at_Cdk2ap2_5end | |description=CAGE_peak_5_at_Cdk2ap2_5end | ||
|id=chr19:4097678..4097713,+ | |id=chr19:4097678..4097713,+ | ||
|ontology_enrichment_celltype=CL:0000063!2.26e-07!66 | |ontology_enrichment_celltype=CL:0000063!2.26e-07!66 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.98e-11!47;UBERON:0002100!1.93e-09!98;UBERON:0003104!5.22e-09!131;UBERON:0009142!5.22e-09!131;UBERON:0004119!1.04e-08!130;UBERON:0000925!1.04e-08!130;UBERON:0006595!1.04e-08!130;UBERON:0000466!3.83e-08!79;UBERON:0000926!4.26e-08!193;UBERON:0004120!4.26e-08!193;UBERON:0006603!4.26e-08!193;UBERON:0001007!4.98e-08!128;UBERON:0001555!4.98e-08!128;UBERON:0007026!4.98e-08!128;UBERON:0002365!8.11e-08!25;UBERON:0002330!8.11e-08!25;UBERON:0005172!2.55e-07!49;UBERON:0005173!2.55e-07!49;UBERON:0002417!2.55e-07!49;UBERON:0000916!2.55e-07!49;UBERON:0004921!2.60e-07!126;UBERON:0004185!2.60e-07!126;UBERON:0002107!6.42e-07!22;UBERON:0007499!6.42e-07!22;UBERON:0006925!6.42e-07!22;UBERON:0009497!6.42e-07!22;UBERON:0000015!6.42e-07!22;UBERON:0002423!6.42e-07!22;UBERON:0006235!6.42e-07!22;UBERON:0008835!6.42e-07!22;UBERON:0003894!6.42e-07!22;UBERON:0004161!6.42e-07!22;UBERON:0008836!6.42e-07!22;UBERON:0002204!7.02e-07!32 | |ontology_enrichment_uberon=UBERON:0005256!2.98e-11!47;UBERON:0002100!1.93e-09!98;UBERON:0003104!5.22e-09!131;UBERON:0009142!5.22e-09!131;UBERON:0004119!1.04e-08!130;UBERON:0000925!1.04e-08!130;UBERON:0006595!1.04e-08!130;UBERON:0000466!3.83e-08!79;UBERON:0000926!4.26e-08!193;UBERON:0004120!4.26e-08!193;UBERON:0006603!4.26e-08!193;UBERON:0001007!4.98e-08!128;UBERON:0001555!4.98e-08!128;UBERON:0007026!4.98e-08!128;UBERON:0002365!8.11e-08!25;UBERON:0002330!8.11e-08!25;UBERON:0005172!2.55e-07!49;UBERON:0005173!2.55e-07!49;UBERON:0002417!2.55e-07!49;UBERON:0000916!2.55e-07!49;UBERON:0004921!2.60e-07!126;UBERON:0004185!2.60e-07!126;UBERON:0002107!6.42e-07!22;UBERON:0007499!6.42e-07!22;UBERON:0006925!6.42e-07!22;UBERON:0009497!6.42e-07!22;UBERON:0000015!6.42e-07!22;UBERON:0002423!6.42e-07!22;UBERON:0006235!6.42e-07!22;UBERON:0008835!6.42e-07!22;UBERON:0003894!6.42e-07!22;UBERON:0004161!6.42e-07!22;UBERON:0008836!6.42e-07!22;UBERON:0002204!7.02e-07!32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,2.41e-13,45;UBERON:0002100,2.77e-13,90;UBERON:0005177,1.95e-09,79;UBERON:0002365,1.43e-08,25;UBERON:0002330,1.43e-08,25;UBERON:0003104,2.02e-08,61;UBERON:0009142,2.02e-08,61;UBERON:0002204,1.16e-07,32;UBERON:0002107,1.52e-07,22;UBERON:0007499,1.52e-07,22;UBERON:0006925,1.52e-07,22;UBERON:0009497,1.52e-07,22;UBERON:0000015,1.52e-07,22;UBERON:0002423,1.52e-07,22;UBERON:0006235,1.52e-07,22;UBERON:0008835,1.52e-07,22;UBERON:0003894,1.52e-07,22;UBERON:0004161,1.52e-07,22;UBERON:0008836,1.52e-07,22;UBERON:0005172,4.75e-07,49;UBERON:0005173,4.75e-07,49;UBERON:0002417,4.75e-07,49;UBERON:0000916,4.75e-07,49;UBERON:0009854,7.22e-07,23;UBERON:0009856,7.22e-07,23;UBERON:0004923,7.96e-07,24 | |||
|phase1_expression=1.44133962394315,11.5161884520989,13.6499771816861,0.60492842261366,3.00537437967808,3.69334398206158,9.34450562382103,2.58246646883153,0.563154888606667,1.87251621057595,0.856089841127525,1.43589886191606,0.684802919724823,1.13646523144697,1.66554880907831,2.83465374345756,2.79824751251259,1.57731082679119,1.23402990245165,1.27316895539409,1.10556277196391,0.695036658406197,0.783599367416806,9.91953021319121,9.63518980482114,15.5042630311055,10.7690499039769,13.574687659211,2.28028103347649,4.03248207615889,14.6342137032501,0.635030673459631,1.84519436275371,0,0.577703239502549,1.66234645358492,2.24586291888606,43.1087579659015,31.253413780952,30.3643771504803,38.8232782100469,39.6166381275899,38.3553178894611,7.1761186246079,6.38674666682942,5.32285581268876,6.25913075478431,1.74420125104357,4.61340983742391,2.13872888981712,2.65974201088189,1.43752564364972,0.167782606057736,0,0,1.54355661621568,2.57880095944881,3.09403255366465,0,0,0,5.08266798103698,8.00365316500025,6.74924787961049,11.8663963508037,9.9467216092454,2.39680088414724,4.99483796918021,0.207379224616955,0.135005938331691,0,0.285650984403804,0,0.122490799214954,0,0,1.10115880999389,0.383062014255563,0.307213066512487,0,0.182975287204819,0,0.279182999001381,0.56276261003168,0.30559649555362,0,0.142371680799103,0.186399445825301,0.832988126665025,0.906858721281426,0.579728977403356,10.3250865237766,9.51959867190851,12.4131734076698,4.54843492213368,1.34408066129201,1.40444420131752,5.79463096765396,7.53379413348319,7.42013106471715,0.563373679106722,1.28326477414318,2.54805239706646,0,3.68034769719064,3.29367825117628,4.04419556011827,1.59857431606684,0.776813650941515,4.45326417194474,0.346970653532272,2.74018930480927,2.53677046981664,5.42601505989441,2.3517741427141,2.63899841792318,2.71914464507811,1.73519228303894,3.5384422077995,0.323533699894818,0.441683036920787,1.93950101254089,0,0.585561594023094,0.83778682725382,3.32094171771169,1.07833612055328,1.19980546198682,1.39777249780371,0.299581278809645,0,0.125654352112864,0.521472960576829,0,0,0.162241263067758,0.305518091550949,2.48813941220186,6.06534620240819,1.47309299120532,0.260240885925407,0.919608417733892,0.180062129805349,0.753524089178575,0.272145996605311,0.384341160854549,1.21812241927647,2.06962696591213,0,0,0.703804496655795,0.876782929710299,0.556094498451196,0.348252166522167,0.411564272815887,0.199034266818493,2.80885274925294,4.63226232806487,1.70498099637356,0,0.234526059981096,0.900310307305074,0.946978942340841,0,0.617068451549513,0.930135779001631,0,0.350296027101508,0.493679549740441,0.820837320395476,0.243206428637567,0,1.75640092232841,0.671032093801859,0.210289948564127,0.102904612379284,0.660837565967596,3.70230793328962,0.426576501070468,0.232236671860439,0,1.21010114774006,1.77902435075896,1.14135375667535,0.474529061544512,1.4822905925161,0.754005626400808,1.79060824837036,0.38992817423824,0.898819408654221,2.80979464837102,2.19055400579804,0.758671603812327,0.685491075658373,1.1270773567308,0.610953983535943,1.16371492300575,0.631222379012867,0.316182685621286,0.590440591918409,0.941992367048249,1.23397163921801,5.92905254174298,1.83529616287703,1.17935397067922,2.47348323623339,3.44862206360455,3.13530307678142,4.58326533206556,2.5892652370573,2.2698931748505,4.66754402419738,2.87536413054709,4.83783231969054,3.12037673114561,3.78868316920668,12.19902411949,4.3419916922703,2.03228509183265,0.568474235311454,0.162964976442026,0.678980343100753,0.234690248288502,0.167506257441816,1.19021820443007,1.56106918286239,1.10344600874334,0.664394068946325,0.797273843287435,2.78567635016755,2.76295970985433,3.03763023021174,9.04747703635634,14.6854534631052,5.4094070032094,2.48343071674259,0.481651769963376,0.35163505977661,4.59017847054691,0.252470927204373,1.89304931649754,0.780877488593277,0.430846795465598,0.238968797952552,0.445597348164788,0.849229592366497,0.809621403349789,0.292255857911312,0,0,1.84522110770749,0.534196811001766,0.488660878060728,0.989820737835213,3.98235415019888,1.21390318077491,2.41858845571801,3.39489143560617,8.26845300066164,4.61152721915891,1.03371317267288,1.09060118843252,2.49548164869305,9.16506598013866,11.5960469432499,10.3135543248187,1.36175842301515,0.18006109403131,0.517434735131018,0.214337035031592,0.354680467284547,0.356737635204141,0.987294123612726,0.304464949114599,5.16277757740163,7.62595455109753,15.6575162619023,0.49465875882444,0.645857706783622,0.72375509913787,0.835606408021955,0.492422699235184,2.62332752966866,0,3.75915937755276,3.50857675537478,4.07427960213366,2.44878994106098,1.91371918809435,2.28778173206523,0.339956859987711,0.279902904647316,0.829199842826543,3.81868247206045,0.474503990371703,1.42323626988794,0.86404272657441,1.67270636811575,2.18362563746178,2.29269388854195,1.48776220305605,3.66458318777641,2.20345454596048,3.72803587852155,3.94585057078933,0.299033092087958,0.165458490457098,0.388902376688095,0.258319646955462,0.675824501963113,0.352071715937262,1.0416350787516,1.57289016638566,2.41584120826006,2.01621004380506,0.316011120628178,0.608175645870493,0.308132871494482,1.03936658382236,0.179026695667481,0.39736270956253,0.240390899039938,0.590758108698309,0.605798699688886,0.228620419965,0.403304740547362,0.194915761479505,0.384847366561318,0.818138315270983,0.906921534460845,3.32978930061097,5.47254525317802,8.562115434568,1.54551675225752,4.31669693537719,2.19781949120718,0.214368379079066,10.0314420807073,0,0.460325236507177,0,0.171853182343688,0,0,0,0,0,0,0.207574695168353,0.798049746802062,0.853668028770671,1.21553358534147,3.14419743941973,2.38996560985018,0.888986911206461,1.44224540067226,0.320919209591815,1.01078884705519,0.760437899670719,0.565879024158229,0.280924522409647,0.89635213366817,1.03383844120104,1.42888107384922,0.231768651889711,0.192909220463705,0.824171801606613,1.03039244094078,0.685738504770831,0.532427418478012,1.1921809497366,0.726732083161643,0.752875043322645,0.846146078916765,0.548783918618318,0.526139422875686,0.814824683075171,0.561142271657738,0.949080144993393,1.18205378850676,1.22769312950907,0.464810523557898,0.578719832943424,0.249810577937946,0.233931608445408,1.07435527024149,0.956441660344217,0.882365676478062,1.15933917810211 | |phase1_expression=1.44133962394315,11.5161884520989,13.6499771816861,0.60492842261366,3.00537437967808,3.69334398206158,9.34450562382103,2.58246646883153,0.563154888606667,1.87251621057595,0.856089841127525,1.43589886191606,0.684802919724823,1.13646523144697,1.66554880907831,2.83465374345756,2.79824751251259,1.57731082679119,1.23402990245165,1.27316895539409,1.10556277196391,0.695036658406197,0.783599367416806,9.91953021319121,9.63518980482114,15.5042630311055,10.7690499039769,13.574687659211,2.28028103347649,4.03248207615889,14.6342137032501,0.635030673459631,1.84519436275371,0,0.577703239502549,1.66234645358492,2.24586291888606,43.1087579659015,31.253413780952,30.3643771504803,38.8232782100469,39.6166381275899,38.3553178894611,7.1761186246079,6.38674666682942,5.32285581268876,6.25913075478431,1.74420125104357,4.61340983742391,2.13872888981712,2.65974201088189,1.43752564364972,0.167782606057736,0,0,1.54355661621568,2.57880095944881,3.09403255366465,0,0,0,5.08266798103698,8.00365316500025,6.74924787961049,11.8663963508037,9.9467216092454,2.39680088414724,4.99483796918021,0.207379224616955,0.135005938331691,0,0.285650984403804,0,0.122490799214954,0,0,1.10115880999389,0.383062014255563,0.307213066512487,0,0.182975287204819,0,0.279182999001381,0.56276261003168,0.30559649555362,0,0.142371680799103,0.186399445825301,0.832988126665025,0.906858721281426,0.579728977403356,10.3250865237766,9.51959867190851,12.4131734076698,4.54843492213368,1.34408066129201,1.40444420131752,5.79463096765396,7.53379413348319,7.42013106471715,0.563373679106722,1.28326477414318,2.54805239706646,0,3.68034769719064,3.29367825117628,4.04419556011827,1.59857431606684,0.776813650941515,4.45326417194474,0.346970653532272,2.74018930480927,2.53677046981664,5.42601505989441,2.3517741427141,2.63899841792318,2.71914464507811,1.73519228303894,3.5384422077995,0.323533699894818,0.441683036920787,1.93950101254089,0,0.585561594023094,0.83778682725382,3.32094171771169,1.07833612055328,1.19980546198682,1.39777249780371,0.299581278809645,0,0.125654352112864,0.521472960576829,0,0,0.162241263067758,0.305518091550949,2.48813941220186,6.06534620240819,1.47309299120532,0.260240885925407,0.919608417733892,0.180062129805349,0.753524089178575,0.272145996605311,0.384341160854549,1.21812241927647,2.06962696591213,0,0,0.703804496655795,0.876782929710299,0.556094498451196,0.348252166522167,0.411564272815887,0.199034266818493,2.80885274925294,4.63226232806487,1.70498099637356,0,0.234526059981096,0.900310307305074,0.946978942340841,0,0.617068451549513,0.930135779001631,0,0.350296027101508,0.493679549740441,0.820837320395476,0.243206428637567,0,1.75640092232841,0.671032093801859,0.210289948564127,0.102904612379284,0.660837565967596,3.70230793328962,0.426576501070468,0.232236671860439,0,1.21010114774006,1.77902435075896,1.14135375667535,0.474529061544512,1.4822905925161,0.754005626400808,1.79060824837036,0.38992817423824,0.898819408654221,2.80979464837102,2.19055400579804,0.758671603812327,0.685491075658373,1.1270773567308,0.610953983535943,1.16371492300575,0.631222379012867,0.316182685621286,0.590440591918409,0.941992367048249,1.23397163921801,5.92905254174298,1.83529616287703,1.17935397067922,2.47348323623339,3.44862206360455,3.13530307678142,4.58326533206556,2.5892652370573,2.2698931748505,4.66754402419738,2.87536413054709,4.83783231969054,3.12037673114561,3.78868316920668,12.19902411949,4.3419916922703,2.03228509183265,0.568474235311454,0.162964976442026,0.678980343100753,0.234690248288502,0.167506257441816,1.19021820443007,1.56106918286239,1.10344600874334,0.664394068946325,0.797273843287435,2.78567635016755,2.76295970985433,3.03763023021174,9.04747703635634,14.6854534631052,5.4094070032094,2.48343071674259,0.481651769963376,0.35163505977661,4.59017847054691,0.252470927204373,1.89304931649754,0.780877488593277,0.430846795465598,0.238968797952552,0.445597348164788,0.849229592366497,0.809621403349789,0.292255857911312,0,0,1.84522110770749,0.534196811001766,0.488660878060728,0.989820737835213,3.98235415019888,1.21390318077491,2.41858845571801,3.39489143560617,8.26845300066164,4.61152721915891,1.03371317267288,1.09060118843252,2.49548164869305,9.16506598013866,11.5960469432499,10.3135543248187,1.36175842301515,0.18006109403131,0.517434735131018,0.214337035031592,0.354680467284547,0.356737635204141,0.987294123612726,0.304464949114599,5.16277757740163,7.62595455109753,15.6575162619023,0.49465875882444,0.645857706783622,0.72375509913787,0.835606408021955,0.492422699235184,2.62332752966866,0,3.75915937755276,3.50857675537478,4.07427960213366,2.44878994106098,1.91371918809435,2.28778173206523,0.339956859987711,0.279902904647316,0.829199842826543,3.81868247206045,0.474503990371703,1.42323626988794,0.86404272657441,1.67270636811575,2.18362563746178,2.29269388854195,1.48776220305605,3.66458318777641,2.20345454596048,3.72803587852155,3.94585057078933,0.299033092087958,0.165458490457098,0.388902376688095,0.258319646955462,0.675824501963113,0.352071715937262,1.0416350787516,1.57289016638566,2.41584120826006,2.01621004380506,0.316011120628178,0.608175645870493,0.308132871494482,1.03936658382236,0.179026695667481,0.39736270956253,0.240390899039938,0.590758108698309,0.605798699688886,0.228620419965,0.403304740547362,0.194915761479505,0.384847366561318,0.818138315270983,0.906921534460845,3.32978930061097,5.47254525317802,8.562115434568,1.54551675225752,4.31669693537719,2.19781949120718,0.214368379079066,10.0314420807073,0,0.460325236507177,0,0.171853182343688,0,0,0,0,0,0,0.207574695168353,0.798049746802062,0.853668028770671,1.21553358534147,3.14419743941973,2.38996560985018,0.888986911206461,1.44224540067226,0.320919209591815,1.01078884705519,0.760437899670719,0.565879024158229,0.280924522409647,0.89635213366817,1.03383844120104,1.42888107384922,0.231768651889711,0.192909220463705,0.824171801606613,1.03039244094078,0.685738504770831,0.532427418478012,1.1921809497366,0.726732083161643,0.752875043322645,0.846146078916765,0.548783918618318,0.526139422875686,0.814824683075171,0.561142271657738,0.949080144993393,1.18205378850676,1.22769312950907,0.464810523557898,0.578719832943424,0.249810577937946,0.233931608445408,1.07435527024149,0.956441660344217,0.882365676478062,1.15933917810211 | ||
|short_description=p5@Cdk2ap2 | |short_description=p5@Cdk2ap2 | ||
}} | }} |
Latest revision as of 18:14, 25 September 2015
Short description: | p5@Cdk2ap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Cdk2ap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 277bp_to_ENSMUST00000172914_5end |
EntrezGene: | Cdk2ap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 2.41e-13 | 45 |
trunk | 2.77e-13 | 90 |
trunk region element | 1.95e-09 | 79 |
exocrine gland | 1.43e-08 | 25 |
exocrine system | 1.43e-08 | 25 |
mesenchyme | 2.02e-08 | 61 |
entire embryonic mesenchyme | 2.02e-08 | 61 |
musculoskeletal system | 1.16e-07 | 32 |
liver | 1.52e-07 | 22 |
epithelial sac | 1.52e-07 | 22 |
digestive gland | 1.52e-07 | 22 |
epithelium of foregut-midgut junction | 1.52e-07 | 22 |
anatomical boundary | 1.52e-07 | 22 |
hepatobiliary system | 1.52e-07 | 22 |
foregut-midgut junction | 1.52e-07 | 22 |
hepatic diverticulum | 1.52e-07 | 22 |
liver primordium | 1.52e-07 | 22 |
septum transversum | 1.52e-07 | 22 |
liver bud | 1.52e-07 | 22 |
abdomen element | 4.75e-07 | 49 |
abdominal segment element | 4.75e-07 | 49 |
abdominal segment of trunk | 4.75e-07 | 49 |
abdomen | 4.75e-07 | 49 |
digestive tract diverticulum | 7.22e-07 | 23 |
sac | 7.22e-07 | 23 |
organ component layer | 7.96e-07 | 24 |