FFCP PHASE1:Mm9::chr4:116666292..116666308,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=22275|HGNC=|MCL_coexpression_id=28|UniProt=|association_with_transcript=0bp_to_uc008uhs.1_5end|description=CAGE_peak_4_at_Urod_5end|id=chr4:116666292..116666308,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005172!1.04e-08!49;UBERON:0005173!1.04e-08!49;UBERON:0002417!1.04e-08!49;UBERON:0000916!1.04e-08!49;UBERON:0003887!3.71e-08!10;UBERON:0002106!2.76e-07!6;UBERON:0004457!2.76e-07!6;UBERON:0000042!2.76e-07!6;UBERON:0004854!2.76e-07!6;UBERON:0009034!2.76e-07!6;UBERON:0002095!2.76e-07!6;UBERON:0004782!2.76e-07!6;UBERON:0003281!2.76e-07!6;UBERON:0009664!2.76e-07!6;UBERON:0002296!2.76e-07!6;UBERON:0005602!2.76e-07!6;UBERON:0001179!2.76e-07!6;UBERON:0006293!2.76e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000970,8.07e-11,9;UBERON:0000019,8.07e-11,9;UBERON:0000047,8.07e-11,9;UBERON:0010312,8.07e-11,9;UBERON:0004088,8.07e-11,9;UBERON:0002104,8.07e-11,9;UBERON:0001456,8.07e-11,9;UBERON:0003072,8.07e-11,9;UBERON:0004128,8.07e-11,9;UBERON:0003071,8.07e-11,9;UBERON:0001444,4.82e-09,11;UBERON:0001301,1.59e-08,3;UBERON:0006555,1.59e-08,3;UBERON:0005103,1.59e-08,3;UBERON:0000083,1.59e-08,3;UBERON:0009201,1.59e-08,3;UBERON:0004819,1.59e-08,3;UBERON:0006553,1.59e-08,3;UBERON:0003074,1.59e-08,3;UBERON:0003060,1.59e-08,3;UBERON:0000020,2.25e-08,12;UBERON:0001032,2.25e-08,12;UBERON:0004456,2.25e-08,12;UBERON:0000033,8.31e-08,13;UBERON:0005085,8.31e-08,13|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,0.404950534779652,0,0.157731082679119,0,0,0,0,0,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0.988866362566974,0,0,0,0,0.135005938331691,0,0,0,0,0.0958454710182364,0,0,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.373220911830279,1.51633655060205,16.414464759145,0,0,0,0,0,0,0,5.43277078551933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0.198956472041151,0,0,0,0,0.189667900953082,0,0,0,0,0,0.0632365371242573,0.147610147979602,0,0,0.296452627087149,0.667380422864376,0,0.449724224769707,0.608580364165509,0.72353147925725,0.50925170356284,0,1.29708181420028,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0.164140899745061,0,0,0.341741761595705,0.206386867963223,0,0.188368457004691,0.820165366326151,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0.149516546043979,0,0,0,0,0,0,0.209718688851422,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@Urod}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22275 | |||
|HGNC= | |||
|MCL_coexpression_id=28 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc008uhs.1_5end | |||
|cluster_id=chr4:116666292..116666308,- | |||
|description=CAGE_peak_4_at_Urod_5end | |||
|id=chr4:116666292..116666308,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005172!1.04e-08!49;UBERON:0005173!1.04e-08!49;UBERON:0002417!1.04e-08!49;UBERON:0000916!1.04e-08!49;UBERON:0003887!3.71e-08!10;UBERON:0002106!2.76e-07!6;UBERON:0004457!2.76e-07!6;UBERON:0000042!2.76e-07!6;UBERON:0004854!2.76e-07!6;UBERON:0009034!2.76e-07!6;UBERON:0002095!2.76e-07!6;UBERON:0004782!2.76e-07!6;UBERON:0003281!2.76e-07!6;UBERON:0009664!2.76e-07!6;UBERON:0002296!2.76e-07!6;UBERON:0005602!2.76e-07!6;UBERON:0001179!2.76e-07!6;UBERON:0006293!2.76e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,8.07e-11,9;UBERON:0000019,8.07e-11,9;UBERON:0000047,8.07e-11,9;UBERON:0010312,8.07e-11,9;UBERON:0004088,8.07e-11,9;UBERON:0002104,8.07e-11,9;UBERON:0001456,8.07e-11,9;UBERON:0003072,8.07e-11,9;UBERON:0004128,8.07e-11,9;UBERON:0003071,8.07e-11,9;UBERON:0001444,4.82e-09,11;UBERON:0001301,1.59e-08,3;UBERON:0006555,1.59e-08,3;UBERON:0005103,1.59e-08,3;UBERON:0000083,1.59e-08,3;UBERON:0009201,1.59e-08,3;UBERON:0004819,1.59e-08,3;UBERON:0006553,1.59e-08,3;UBERON:0003074,1.59e-08,3;UBERON:0003060,1.59e-08,3;UBERON:0000020,2.25e-08,12;UBERON:0001032,2.25e-08,12;UBERON:0004456,2.25e-08,12;UBERON:0000033,8.31e-08,13;UBERON:0005085,8.31e-08,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,0.404950534779652,0,0.157731082679119,0,0,0,0,0,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0.988866362566974,0,0,0,0,0.135005938331691,0,0,0,0,0.0958454710182364,0,0,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.373220911830279,1.51633655060205,16.414464759145,0,0,0,0,0,0,0,5.43277078551933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0.198956472041151,0,0,0,0,0.189667900953082,0,0,0,0,0,0.0632365371242573,0.147610147979602,0,0,0.296452627087149,0.667380422864376,0,0.449724224769707,0.608580364165509,0.72353147925725,0.50925170356284,0,1.29708181420028,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0.164140899745061,0,0,0.341741761595705,0.206386867963223,0,0.188368457004691,0.820165366326151,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0.149516546043979,0,0,0,0,0,0,0.209718688851422,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@Urod | |||
}} |
Latest revision as of 05:26, 26 September 2015
Short description: | p4@Urod |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Urod_5end |
Coexpression cluster: | MCL_coexpression_mm9:28 |
Association with transcript: | 0bp_to_uc008uhs.1_5end |
EntrezGene: | Urod |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 8.07e-11 | 9 |
camera-type eye | 8.07e-11 | 9 |
simple eye | 8.07e-11 | 9 |
immature eye | 8.07e-11 | 9 |
ocular region | 8.07e-11 | 9 |
visual system | 8.07e-11 | 9 |
face | 8.07e-11 | 9 |
optic cup | 8.07e-11 | 9 |
optic vesicle | 8.07e-11 | 9 |
eye primordium | 8.07e-11 | 9 |
subdivision of head | 4.82e-09 | 11 |
epididymis | 1.59e-08 | 3 |
excretory tube | 1.59e-08 | 3 |
mesonephric epithelium | 1.59e-08 | 3 |
mesonephric tubule | 1.59e-08 | 3 |
nephric duct | 1.59e-08 | 3 |
kidney epithelium | 1.59e-08 | 3 |
renal duct | 1.59e-08 | 3 |
mesonephric duct | 1.59e-08 | 3 |
pronephric duct | 1.59e-08 | 3 |
sense organ | 2.25e-08 | 12 |
sensory system | 2.25e-08 | 12 |
entire sense organ system | 2.25e-08 | 12 |
head | 8.31e-08 | 13 |
ectodermal placode | 8.31e-08 | 13 |