FFCP PHASE1:Mm9::chr9:46721556..46721563,+: Difference between revisions
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|id=chr9:46721556..46721563,+
|short_description=p5@2900052N01Rik
|description=CAGE_peak_5_at_2900052N01Rik_5end
|association_with_transcript=-122bp_to_NR_015605,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=73040 | |EntrezGene=73040 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=503 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-122bp_to_NR_015605,uc009phk.1,uc009phl.1_5end | |||
|cluster_id=chr9:46721556..46721563,+ | |||
|description=CAGE_peak_5_at_2900052N01Rik_5end | |||
|id=chr9:46721556..46721563,+ | |||
|ontology_enrichment_celltype=CL:0002610!4.16e-10!3;CL:0002614!6.21e-10!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,3.27e-44,3;CL:0002614,2.49e-20,3;CL:0000117,2.72e-16,23;CL:0000337,2.72e-16,23;CL:0000540,1.68e-11,33;CL:0000047,1.68e-11,33;CL:0000031,1.68e-11,33;CL:0000404,1.68e-11,33;CL:0000393,8.49e-10,39;CL:0000211,8.49e-10,39;CL:0002319,6.37e-09,43;CL:0000221,9.96e-09,44;CL:0000133,9.96e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!2.51e-17!6;UBERON:0002950!1.22e-12!4;UBERON:0001891!1.22e-12!4;UBERON:0009616!1.22e-12!4;UBERON:0007811!3.57e-11!86;UBERON:0000033!5.45e-11!63;UBERON:0002616!1.98e-10!49;UBERON:0000955!3.73e-10!50;UBERON:0006238!3.73e-10!50;UBERON:0004684!4.16e-10!3;UBERON:0002275!4.16e-10!3;UBERON:0002038!6.21e-10!3;UBERON:0002308!6.21e-10!3;UBERON:0009663!6.21e-10!3;UBERON:0009661!6.21e-10!3;UBERON:0006331!6.21e-10!3;UBERON:0000125!6.21e-10!3;UBERON:0000153!8.17e-10!94;UBERON:0003056!3.19e-07!49;UBERON:0001017!6.42e-07!73;UBERON:0005743!6.42e-07!73;UBERON:0002346!7.83e-07!71;UBERON:0003075!7.83e-07!71;UBERON:0007284!7.83e-07!71;UBERON:0001049!8.32e-07!52;UBERON:0005068!8.32e-07!52;UBERON:0006241!8.32e-07!52;UBERON:0007135!8.32e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,3.27e-44,3;UBERON:0002275,3.27e-44,3;UBERON:0002038,2.49e-20,3;UBERON:0009663,2.49e-20,3;UBERON:0009661,2.49e-20,3;UBERON:0000125,2.49e-20,3;UBERON:0002308,2.49e-20,3;UBERON:0002950,1.58e-15,4;UBERON:0001891,1.58e-15,4;UBERON:0009616,1.58e-15,4;UBERON:0010286,1.58e-15,4;UBERON:0000073,4.19e-10,54;UBERON:0002420,2.89e-08,8;UBERON:0007245,2.89e-08,8;UBERON:0010009,2.89e-08,8;UBERON:0010011,2.89e-08,8;UBERON:0000454,2.89e-08,8;UBERON:0001017,1.48e-07,73;UBERON:0001016,2.31e-07,75 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,0.255129870453209,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20231761998777,1.27687338085188,3.07213066512487,0,0,0,0.837548997004143,1.68828783009504,2.13917546887534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898743836428936,0,0,0,0,1.66230435647648,0.486723789203273,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0.170870880797853,0,0,0,0.410082683163076,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0.45032120322422,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,0.255129870453209,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20231761998777,1.27687338085188,3.07213066512487,0,0,0,0.837548997004143,1.68828783009504,2.13917546887534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898743836428936,0,0,0,0,1.66230435647648,0.486723789203273,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0.170870880797853,0,0,0,0.410082683163076,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0.45032120322422,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@2900052N01Rik | |||
}} | }} |
Latest revision as of 18:30, 26 September 2015
Short description: | p5@2900052N01Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_2900052N01Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:503 |
Association with transcript: | -122bp_to_NR_015605, uc009phk.1, uc009phl.1_5end |
EntrezGene: | 2900052N01Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 3.27e-44 | 3 |
neuron of the substantia nigra | 2.49e-20 | 3 |
CNS neuron (sensu Vertebrata) | 2.72e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-16 | 23 |
neuron | 1.68e-11 | 33 |
neuronal stem cell | 1.68e-11 | 33 |
neuroblast | 1.68e-11 | 33 |
electrically signaling cell | 1.68e-11 | 33 |
electrically responsive cell | 8.49e-10 | 39 |
electrically active cell | 8.49e-10 | 39 |
neural cell | 6.37e-09 | 43 |
ectodermal cell | 9.96e-09 | 44 |
neurectodermal cell | 9.96e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 3.27e-44 | 3 |
reticular formation | 3.27e-44 | 3 |
substantia nigra | 2.49e-20 | 3 |
telencephalic nucleus | 2.49e-20 | 3 |
midbrain nucleus | 2.49e-20 | 3 |
neural nucleus | 2.49e-20 | 3 |
nucleus of brain | 2.49e-20 | 3 |
regional part of midbrain | 1.58e-15 | 4 |
midbrain | 1.58e-15 | 4 |
presumptive midbrain | 1.58e-15 | 4 |
midbrain neural tube | 1.58e-15 | 4 |
regional part of nervous system | 4.19e-10 | 54 |
basal ganglion | 2.89e-08 | 8 |
nuclear complex of neuraxis | 2.89e-08 | 8 |
aggregate regional part of brain | 2.89e-08 | 8 |
collection of basal ganglia | 2.89e-08 | 8 |
cerebral subcortex | 2.89e-08 | 8 |
central nervous system | 1.48e-07 | 73 |
nervous system | 2.31e-07 | 75 |