FFCP PHASE1:Mm9::chr6:85770975..85770984,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=69049,93674 | |EntrezGene=69049,93674 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2211 | |||
|TSSclassifier=NA | |||
|UniProt=Q9QXS8,Q9JIY8 | |UniProt=Q9QXS8,Q9JIY8 | ||
|association_with_transcript=-9bp_to_ENSMUST00000032074,NM_023493,uc009cqc.2,uc009cqg.2_5end | |association_with_transcript=-9bp_to_ENSMUST00000032074,NM_023493,uc009cqc.2,uc009cqg.2_5end | ||
|cluster_id=chr6:85770975..85770984,- | |||
|description=CAGE_peak_2_at_Cml3_5end,CAGE_peak_2_at_Cml5_5end | |description=CAGE_peak_2_at_Cml3_5end,CAGE_peak_2_at_Cml5_5end | ||
|id=chr6:85770975..85770984,- | |id=chr6:85770975..85770984,- | ||
|ontology_enrichment_celltype=CL:0000239!1.25e-15!6;CL:0000677!1.25e-15!6;CL:0000212!1.25e-15!6;CL:0000584!1.25e-15!6;CL:0000066!1.66e-15!25;CL:0002563!1.84e-13!9;CL:0002251!1.84e-13!9;CL:0000075!2.66e-13!7;CL:0000223!2.63e-11!20;CL:0000473!2.14e-09!3;CL:0000627!2.14e-09!3;CL:0000682!2.14e-09!3;CL:0002076!1.12e-07!15 | |ontology_enrichment_celltype=CL:0000239!1.25e-15!6;CL:0000677!1.25e-15!6;CL:0000212!1.25e-15!6;CL:0000584!1.25e-15!6;CL:0000066!1.66e-15!25;CL:0002563!1.84e-13!9;CL:0002251!1.84e-13!9;CL:0000075!2.66e-13!7;CL:0000223!2.63e-11!20;CL:0000473!2.14e-09!3;CL:0000627!2.14e-09!3;CL:0000682!2.14e-09!3;CL:0002076!1.12e-07!15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000682,4.91e-14,3;CL:0000066,1.06e-12,25;CL:0000239,1.15e-11,6;CL:0000677,1.15e-11,6;CL:0000584,1.15e-11,6;CL:0000075,5.09e-10,7;CL:0002563,8.08e-08,9;CL:0002251,8.08e-08,9;CL:0000223,3.51e-07,20 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!5.10e-28!15;UBERON:0001242!6.96e-23!13;UBERON:0000060!6.96e-23!13;UBERON:0001262!6.96e-23!13;UBERON:0004786!6.96e-23!13;UBERON:0000160!3.26e-20!43;UBERON:0004923!2.03e-16!24;UBERON:0005409!1.71e-13!59;UBERON:0003350!1.84e-13!9;UBERON:0004808!1.84e-13!9;UBERON:0001277!1.84e-13!9;UBERON:0000485!7.84e-11!11;UBERON:0000331!1.19e-08!3;UBERON:0002116!1.19e-08!3;UBERON:0001204!1.19e-08!3;UBERON:0001168!1.19e-08!3;UBERON:0001007!1.92e-08!128;UBERON:0001555!1.92e-08!128;UBERON:0007026!1.92e-08!128;UBERON:0004119!3.17e-08!130;UBERON:0000925!3.17e-08!130;UBERON:0006595!3.17e-08!130;UBERON:0001962!8.12e-07!2;UBERON:0001961!8.12e-07!2;UBERON:0001744!8.12e-07!2;UBERON:0004921!8.49e-07!126;UBERON:0004185!8.49e-07!126 | |ontology_enrichment_uberon=UBERON:0000344!5.10e-28!15;UBERON:0001242!6.96e-23!13;UBERON:0000060!6.96e-23!13;UBERON:0001262!6.96e-23!13;UBERON:0004786!6.96e-23!13;UBERON:0000160!3.26e-20!43;UBERON:0004923!2.03e-16!24;UBERON:0005409!1.71e-13!59;UBERON:0003350!1.84e-13!9;UBERON:0004808!1.84e-13!9;UBERON:0001277!1.84e-13!9;UBERON:0000485!7.84e-11!11;UBERON:0000331!1.19e-08!3;UBERON:0002116!1.19e-08!3;UBERON:0001204!1.19e-08!3;UBERON:0001168!1.19e-08!3;UBERON:0001007!1.92e-08!128;UBERON:0001555!1.92e-08!128;UBERON:0007026!1.92e-08!128;UBERON:0004119!3.17e-08!130;UBERON:0000925!3.17e-08!130;UBERON:0006595!3.17e-08!130;UBERON:0001962!8.12e-07!2;UBERON:0001961!8.12e-07!2;UBERON:0001744!8.12e-07!2;UBERON:0004921!8.49e-07!126;UBERON:0004185!8.49e-07!126 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.75e-27,15;UBERON:0000160,5.71e-21,31;UBERON:0001242,5.86e-20,13;UBERON:0001262,5.86e-20,13;UBERON:0004786,5.86e-20,13;UBERON:0004923,2.09e-16,24;UBERON:0002108,2.31e-16,4;UBERON:0005409,4.27e-13,47;UBERON:0000331,7.48e-13,3;UBERON:0002116,7.48e-13,3;UBERON:0001204,7.48e-13,3;UBERON:0001168,7.48e-13,3;UBERON:0001962,6.10e-10,2;UBERON:0001961,6.10e-10,2;UBERON:0001744,6.10e-10,2;UBERON:0001007,8.01e-08,116;UBERON:0001555,8.01e-08,116;UBERON:0007026,8.01e-08,116;UBERON:0003350,8.08e-08,9;UBERON:0004808,8.08e-08,9;UBERON:0001277,8.08e-08,9;UBERON:0004119,1.22e-07,118;UBERON:0000925,1.22e-07,118;UBERON:0006595,1.22e-07,118;UBERON:0002465,6.81e-07,3 | |||
|phase1_expression=0,3.48975407639361,5.0049916332849,1.20985684522732,0.500895729946347,0.503637815735669,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,4.47978783821539,3.44113921600755,3.44539178469012,4.30761996159075,3.44753972297422,1.52018735565099,2.01624103807945,1.33038306393183,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3599426674155,2.69851595818909,0.649776417447669,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.93005079161115,3.70230793328962,0,0,0,0,0,0.190225626112559,1.89811624617805,0.329397909448022,0,0,0,0.898819408654221,0.648414149624083,2.58883655230677,0,0,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0,0 | |phase1_expression=0,3.48975407639361,5.0049916332849,1.20985684522732,0.500895729946347,0.503637815735669,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,4.47978783821539,3.44113921600755,3.44539178469012,4.30761996159075,3.44753972297422,1.52018735565099,2.01624103807945,1.33038306393183,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3599426674155,2.69851595818909,0.649776417447669,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.93005079161115,3.70230793328962,0,0,0,0,0,0.190225626112559,1.89811624617805,0.329397909448022,0,0,0,0.898819408654221,0.648414149624083,2.58883655230677,0,0,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0,0 | ||
|short_description=p2@Cml3,p2@Cml5 | |short_description=p2@Cml3,p2@Cml5 | ||
}} | }} |
Latest revision as of 20:02, 1 October 2015
Short description: | p2@Cml3, p2@Cml5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cml3_5end, CAGE_peak_2_at_Cml5_5end |
Coexpression cluster: | MCL_coexpression_mm9:2211 |
Association with transcript: | -9bp_to_ENSMUST00000032074, NM_023493, uc009cqc.2, uc009cqg.2_5end |
EntrezGene: | 69049,93674 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 4.91e-14 | 3 |
epithelial cell | 1.06e-12 | 25 |
brush border epithelial cell | 1.15e-11 | 6 |
gut absorptive cell | 1.15e-11 | 6 |
enterocyte | 1.15e-11 | 6 |
columnar/cuboidal epithelial cell | 5.09e-10 | 7 |
intestinal epithelial cell | 8.08e-08 | 9 |
epithelial cell of alimentary canal | 8.08e-08 | 9 |
endodermal cell | 3.51e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.75e-27 | 15 |
intestine | 5.71e-21 | 31 |
intestinal mucosa | 5.86e-20 | 13 |
wall of intestine | 5.86e-20 | 13 |
gastrointestinal system mucosa | 5.86e-20 | 13 |
organ component layer | 2.09e-16 | 24 |
small intestine | 2.31e-16 | 4 |
gastrointestinal system | 4.27e-13 | 47 |
ileal mucosa | 7.48e-13 | 3 |
ileum | 7.48e-13 | 3 |
mucosa of small intestine | 7.48e-13 | 3 |
wall of small intestine | 7.48e-13 | 3 |
gut-associated lymphoid tissue | 6.10e-10 | 2 |
mucosa-associated lymphoid tissue | 6.10e-10 | 2 |
lymphoid tissue | 6.10e-10 | 2 |
digestive system | 8.01e-08 | 116 |
digestive tract | 8.01e-08 | 116 |
primitive gut | 8.01e-08 | 116 |
epithelium of mucosa | 8.08e-08 | 9 |
gastrointestinal system epithelium | 8.08e-08 | 9 |
intestinal epithelium | 8.08e-08 | 9 |
endoderm-derived structure | 1.22e-07 | 118 |
endoderm | 1.22e-07 | 118 |
presumptive endoderm | 1.22e-07 | 118 |
lymphoid system | 6.81e-07 | 3 |