Personal tools

FFCP PHASE1:Mm9::chr19:10904411..10904532,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{FFCP|EntrezGene=12511|HGNC=|MCL_coexpression_id=118|UniProt=Q61003,E9QMY6|association_with_transcript=0bp_to_ENSMUST00000039043,ENSMUST00000113053_5end|description=CAGE_peak_1_at_Cd6_5end|id=chr19:10904411..10904532,-|ontology_enrichment_celltype=CL:0000791!1.99e-09!9;CL:0000789!1.99e-09!9;CL:0002420!1.99e-09!9;CL:0002419!1.99e-09!9;CL:0000790!1.99e-09!9;CL:0000624!1.39e-08!8;CL:0000084!5.36e-07!11;CL:0000827!5.36e-07!11;CL:0000838!5.89e-07!12;CL:0000893!8.36e-07!6;CL:0002489!8.36e-07!6;CL:0000898!8.36e-07!6;CL:0000809!8.36e-07!6;CL:0000810!8.36e-07!6;CL:0000895!8.36e-07!6;CL:0000808!8.36e-07!6;CL:0000894!8.36e-07!6;CL:0000806!8.36e-07!6;CL:0000807!8.36e-07!6;CL:0000805!8.36e-07!6;CL:0002425!8.36e-07!6;CL:0002436!8.36e-07!6;CL:0002427!8.36e-07!6;CL:0002428!8.36e-07!6;CL:0002429!8.36e-07!6;CL:0002433!8.36e-07!6;CL:0002431!8.36e-07!6;CL:0002432!8.36e-07!6|ontology_enrichment_celltype_v019_2=CL:0000791,2.21e-15,9;CL:0000789,2.21e-15,9;CL:0002420,2.21e-15,9;CL:0002419,2.21e-15,9;CL:0000790,2.21e-15,9;CL:0000624,6.65e-14,8;CL:0000084,4.03e-12,11;CL:0000827,4.03e-12,11;CL:0000838,6.65e-11,12;CL:0000893,8.70e-11,6;CL:0002489,8.70e-11,6;CL:0000898,8.70e-11,6;CL:0000809,8.70e-11,6;CL:0000810,8.70e-11,6;CL:0000895,8.70e-11,6;CL:0000808,8.70e-11,6;CL:0000894,8.70e-11,6;CL:0000806,8.70e-11,6;CL:0000807,8.70e-11,6;CL:0000805,8.70e-11,6;CL:0002425,8.70e-11,6;CL:0002436,8.70e-11,6;CL:0002427,8.70e-11,6;CL:0002428,8.70e-11,6;CL:0002429,8.70e-11,6;CL:0002433,8.70e-11,6;CL:0002431,8.70e-11,6;CL:0002432,8.70e-11,6;CL:0000542,7.10e-10,13;CL:0000051,7.10e-10,13;CL:0002031,7.60e-10,25;CL:0000738,5.40e-07,17;CL:0002087,5.40e-07,17;CL:0000988,7.44e-07,32;CL:0002032,7.44e-07,32;CL:0000037,7.44e-07,32;CL:0000837,7.44e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.77e-15!29;UBERON:0002193!2.79e-15!48;UBERON:0003408!3.75e-14!24;UBERON:0001004!6.91e-14!42;UBERON:0006562!7.68e-14!24;UBERON:0001557!7.68e-14!24;UBERON:0001042!7.68e-14!24;UBERON:0008814!7.68e-14!24;UBERON:0009145!7.68e-14!24;UBERON:0002390!1.23e-13!45;UBERON:0003061!1.23e-13!45;UBERON:0002370!1.64e-13!23;UBERON:0000974!1.64e-13!23;UBERON:0004807!1.64e-13!23;UBERON:0005058!1.64e-13!23;UBERON:0003351!1.64e-13!23;UBERON:0009113!1.64e-13!23;UBERON:0003295!1.64e-13!23;UBERON:0009722!1.64e-13!23;UBERON:0005562!1.64e-13!23;UBERON:0007690!1.64e-13!23;UBERON:0000065!2.78e-13!41;UBERON:0000072!3.05e-11!27;UBERON:0000063!5.84e-09!35;UBERON:0002405!6.49e-09!70;UBERON:0003081!3.55e-08!88;UBERON:0004119!4.59e-08!130;UBERON:0000925!4.59e-08!130;UBERON:0006595!4.59e-08!130;UBERON:0001007!1.77e-07!128;UBERON:0001555!1.77e-07!128;UBERON:0007026!1.77e-07!128;UBERON:0005057!3.13e-07!51;UBERON:0000077!6.29e-07!97;UBERON:0004921!7.26e-07!126;UBERON:0004185!7.26e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0004177,9.74e-25,29;UBERON:0005057,9.74e-25,29;UBERON:0003408,2.11e-23,24;UBERON:0002193,2.29e-22,48;UBERON:0002405,2.29e-22,48;UBERON:0002370,2.82e-22,23;UBERON:0000974,2.82e-22,23;UBERON:0004807,2.82e-22,23;UBERON:0005058,2.82e-22,23;UBERON:0003351,2.82e-22,23;UBERON:0009113,2.82e-22,23;UBERON:0003295,2.82e-22,23;UBERON:0009722,2.82e-22,23;UBERON:0005562,2.82e-22,23;UBERON:0007690,2.82e-22,23;UBERON:0001004,4.60e-22,42;UBERON:0006562,4.32e-21,24;UBERON:0001557,4.32e-21,24;UBERON:0001042,4.32e-21,24;UBERON:0008814,4.32e-21,24;UBERON:0009145,4.32e-21,24;UBERON:0000065,5.15e-21,41;UBERON:0002390,5.57e-21,45;UBERON:0003061,5.57e-21,45;UBERON:0000077,7.90e-21,35;UBERON:0000072,4.57e-18,27;UBERON:0007811,1.72e-13,36;UBERON:0001041,3.78e-12,80;UBERON:0000153,2.54e-10,43;UBERON:0005911,4.34e-10,69;UBERON:0004119,5.59e-10,118;UBERON:0000925,5.59e-10,118;UBERON:0006595,5.59e-10,118;UBERON:0001007,1.18e-09,116;UBERON:0001555,1.18e-09,116;UBERON:0007026,1.18e-09,116;UBERON:0004921,2.63e-09,114;UBERON:0003081,3.02e-08,87;UBERON:0002530,6.59e-07,65;UBERON:0003929,9.71e-07,55|phase1_expression=0,0,0,0,0,0,0,210.729263856652,441.79501011193,511.430990013556,143.138221436522,164.250875371398,137.131784674896,181.39733501942,1.99865857089398,2.42970320867791,0.699561878128147,11.5143690355757,12.4774134581222,4.2438965179803,4.67738095830884,0,0,0.95995453676044,1.37645568640302,0,0,0,2.09025761402011,5.54466285471848,2.66076612786366,0,0,0,0,0.166234645358492,0,5.02237956884289,0,2.61761871986899,3.52938892818609,1.36609096991689,1.45653105909346,0,0,0,0,0,0,0,0,0,0.167782606057736,191.495605490995,135.109707255271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0,0,2.80888840263504,0,0,0,0,0,0,0,0,0,0,2.8545969929765,25.1169747137757,1.63286352971307,0,0,0,0,0,0.125666591329675,0,0.289198713839823,0.884610551949874,0,0,0.484875253135222,0,0.292780797011547,0,6.13096932500619,0.838705871541442,0,0.381210681219194,0,0,0,0,0,0,0,0.101839363850316,0.497627882440372,0.505445516867349,0.210441855886474,0,0,0.180062129805349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0.852490498186778,0,0,0,0,0,0,0,0,0.583826711835847,0,0.492502392237286,0.243206428637567,1.31579988682799,0.439100230582101,0.134206418760372,0,0,4.62586296177317,0.528901133327089,0,0.232236671860439,0,0,0,0,0.949058123089023,0,0.251335208800269,0.198956472041151,0.779856348476481,0,0.864552199498777,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0.296452627087149,0,0,0,0,0,0,0,0,0.274561413188081,0,1.11642284300551,0.312037673114561,0,0,0,5.17308932466493,0,0,0,0,1.84256883185997,0.238043640886014,0.390267295715598,1.10344600874334,1.32878813789265,1.75400245523236,2.94953966488328,3.45369963731791,2.4590339958857,0,0,0.983528546038072,1.65562047782839,0.160550589987792,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0,0.329940245945071,1.32745138339963,0,0,0,0,0,0,0,0,1.26414703174326,0,0,0,0,0,0,0,0,0,0,1.17335854031855,0.63549621259146,0,0,0.161464426695906,0,0.238744688006273,0,0.582961673259701,0.18542530201051,9.7396402054776,0,0.370389054739423,2.26042148405629,5.87785179200408,6.86334519619568,1.86976272993241,2.09927178485487,1.10559979043539,0.954670618015114,0,0,0,0,0,0,0.330613822901344,0,0.388844919875379,3.10669656543463,0,0,0,0,0,0,0,0,0,0,0,84.3749692077236,0.608175645870493,1.23253148597793,14.551132173513,34.5521522638239,70.531880947349,83.0550556182985,83.5922723808107,82.3886231576885,85.1992098402898,90.441088067746,96.3858440516151,98.0398666314957,120.616963051379,0.680191150845634,0,0,0,0.579568782096571,0,0.183151624267265,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0,0.0936415074698824,0.128050304809739,0.516919220600519,0,0.347652977834566,0.192909220463705,0,0.294397840268795,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.0941093804153306,0.507687647350059,0.182927972872773,0.526139422875686,0.135804113845862,0,0,0.0985044823755635,0,0.464810523557898,0.771626443924566,0,0.935726433781634,1.07435527024149,0,0.220591419119515,0.695603506861264|short_description=p1@Cd6}}
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=12511
|HGNC=
|MCL_coexpression_id=118
|TSSclassifier=NA
|UniProt=Q61003,E9QMY6
|association_with_transcript=0bp_to_ENSMUST00000039043,ENSMUST00000113053_5end
|cluster_id=chr19:10904411..10904532,-
|description=CAGE_peak_1_at_Cd6_5end
|id=chr19:10904411..10904532,-
|ontology_enrichment_celltype=CL:0000791!1.99e-09!9;CL:0000789!1.99e-09!9;CL:0002420!1.99e-09!9;CL:0002419!1.99e-09!9;CL:0000790!1.99e-09!9;CL:0000624!1.39e-08!8;CL:0000084!5.36e-07!11;CL:0000827!5.36e-07!11;CL:0000838!5.89e-07!12;CL:0000893!8.36e-07!6;CL:0002489!8.36e-07!6;CL:0000898!8.36e-07!6;CL:0000809!8.36e-07!6;CL:0000810!8.36e-07!6;CL:0000895!8.36e-07!6;CL:0000808!8.36e-07!6;CL:0000894!8.36e-07!6;CL:0000806!8.36e-07!6;CL:0000807!8.36e-07!6;CL:0000805!8.36e-07!6;CL:0002425!8.36e-07!6;CL:0002436!8.36e-07!6;CL:0002427!8.36e-07!6;CL:0002428!8.36e-07!6;CL:0002429!8.36e-07!6;CL:0002433!8.36e-07!6;CL:0002431!8.36e-07!6;CL:0002432!8.36e-07!6
|ontology_enrichment_celltype_v019_2=CL:0000791,2.21e-15,9;CL:0000789,2.21e-15,9;CL:0002420,2.21e-15,9;CL:0002419,2.21e-15,9;CL:0000790,2.21e-15,9;CL:0000624,6.65e-14,8;CL:0000084,4.03e-12,11;CL:0000827,4.03e-12,11;CL:0000838,6.65e-11,12;CL:0000893,8.70e-11,6;CL:0002489,8.70e-11,6;CL:0000898,8.70e-11,6;CL:0000809,8.70e-11,6;CL:0000810,8.70e-11,6;CL:0000895,8.70e-11,6;CL:0000808,8.70e-11,6;CL:0000894,8.70e-11,6;CL:0000806,8.70e-11,6;CL:0000807,8.70e-11,6;CL:0000805,8.70e-11,6;CL:0002425,8.70e-11,6;CL:0002436,8.70e-11,6;CL:0002427,8.70e-11,6;CL:0002428,8.70e-11,6;CL:0002429,8.70e-11,6;CL:0002433,8.70e-11,6;CL:0002431,8.70e-11,6;CL:0002432,8.70e-11,6;CL:0000542,7.10e-10,13;CL:0000051,7.10e-10,13;CL:0002031,7.60e-10,25;CL:0000738,5.40e-07,17;CL:0002087,5.40e-07,17;CL:0000988,7.44e-07,32;CL:0002032,7.44e-07,32;CL:0000037,7.44e-07,32;CL:0000837,7.44e-07,32
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0004177!1.77e-15!29;UBERON:0002193!2.79e-15!48;UBERON:0003408!3.75e-14!24;UBERON:0001004!6.91e-14!42;UBERON:0006562!7.68e-14!24;UBERON:0001557!7.68e-14!24;UBERON:0001042!7.68e-14!24;UBERON:0008814!7.68e-14!24;UBERON:0009145!7.68e-14!24;UBERON:0002390!1.23e-13!45;UBERON:0003061!1.23e-13!45;UBERON:0002370!1.64e-13!23;UBERON:0000974!1.64e-13!23;UBERON:0004807!1.64e-13!23;UBERON:0005058!1.64e-13!23;UBERON:0003351!1.64e-13!23;UBERON:0009113!1.64e-13!23;UBERON:0003295!1.64e-13!23;UBERON:0009722!1.64e-13!23;UBERON:0005562!1.64e-13!23;UBERON:0007690!1.64e-13!23;UBERON:0000065!2.78e-13!41;UBERON:0000072!3.05e-11!27;UBERON:0000063!5.84e-09!35;UBERON:0002405!6.49e-09!70;UBERON:0003081!3.55e-08!88;UBERON:0004119!4.59e-08!130;UBERON:0000925!4.59e-08!130;UBERON:0006595!4.59e-08!130;UBERON:0001007!1.77e-07!128;UBERON:0001555!1.77e-07!128;UBERON:0007026!1.77e-07!128;UBERON:0005057!3.13e-07!51;UBERON:0000077!6.29e-07!97;UBERON:0004921!7.26e-07!126;UBERON:0004185!7.26e-07!126
|ontology_enrichment_uberon_v019_2=UBERON:0004177,9.74e-25,29;UBERON:0005057,9.74e-25,29;UBERON:0003408,2.11e-23,24;UBERON:0002193,2.29e-22,48;UBERON:0002405,2.29e-22,48;UBERON:0002370,2.82e-22,23;UBERON:0000974,2.82e-22,23;UBERON:0004807,2.82e-22,23;UBERON:0005058,2.82e-22,23;UBERON:0003351,2.82e-22,23;UBERON:0009113,2.82e-22,23;UBERON:0003295,2.82e-22,23;UBERON:0009722,2.82e-22,23;UBERON:0005562,2.82e-22,23;UBERON:0007690,2.82e-22,23;UBERON:0001004,4.60e-22,42;UBERON:0006562,4.32e-21,24;UBERON:0001557,4.32e-21,24;UBERON:0001042,4.32e-21,24;UBERON:0008814,4.32e-21,24;UBERON:0009145,4.32e-21,24;UBERON:0000065,5.15e-21,41;UBERON:0002390,5.57e-21,45;UBERON:0003061,5.57e-21,45;UBERON:0000077,7.90e-21,35;UBERON:0000072,4.57e-18,27;UBERON:0007811,1.72e-13,36;UBERON:0001041,3.78e-12,80;UBERON:0000153,2.54e-10,43;UBERON:0005911,4.34e-10,69;UBERON:0004119,5.59e-10,118;UBERON:0000925,5.59e-10,118;UBERON:0006595,5.59e-10,118;UBERON:0001007,1.18e-09,116;UBERON:0001555,1.18e-09,116;UBERON:0007026,1.18e-09,116;UBERON:0004921,2.63e-09,114;UBERON:0003081,3.02e-08,87;UBERON:0002530,6.59e-07,65;UBERON:0003929,9.71e-07,55
|phase1_expression=0,0,0,0,0,0,0,210.729263856652,441.79501011193,511.430990013556,143.138221436522,164.250875371398,137.131784674896,181.39733501942,1.99865857089398,2.42970320867791,0.699561878128147,11.5143690355757,12.4774134581222,4.2438965179803,4.67738095830884,0,0,0.95995453676044,1.37645568640302,0,0,0,2.09025761402011,5.54466285471848,2.66076612786366,0,0,0,0,0.166234645358492,0,5.02237956884289,0,2.61761871986899,3.52938892818609,1.36609096991689,1.45653105909346,0,0,0,0,0,0,0,0,0,0.167782606057736,191.495605490995,135.109707255271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0,0,2.80888840263504,0,0,0,0,0,0,0,0,0,0,2.8545969929765,25.1169747137757,1.63286352971307,0,0,0,0,0,0.125666591329675,0,0.289198713839823,0.884610551949874,0,0,0.484875253135222,0,0.292780797011547,0,6.13096932500619,0.838705871541442,0,0.381210681219194,0,0,0,0,0,0,0,0.101839363850316,0.497627882440372,0.505445516867349,0.210441855886474,0,0,0.180062129805349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0.852490498186778,0,0,0,0,0,0,0,0,0.583826711835847,0,0.492502392237286,0.243206428637567,1.31579988682799,0.439100230582101,0.134206418760372,0,0,4.62586296177317,0.528901133327089,0,0.232236671860439,0,0,0,0,0.949058123089023,0,0.251335208800269,0.198956472041151,0.779856348476481,0,0.864552199498777,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0.296452627087149,0,0,0,0,0,0,0,0,0.274561413188081,0,1.11642284300551,0.312037673114561,0,0,0,5.17308932466493,0,0,0,0,1.84256883185997,0.238043640886014,0.390267295715598,1.10344600874334,1.32878813789265,1.75400245523236,2.94953966488328,3.45369963731791,2.4590339958857,0,0,0.983528546038072,1.65562047782839,0.160550589987792,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0,0.329940245945071,1.32745138339963,0,0,0,0,0,0,0,0,1.26414703174326,0,0,0,0,0,0,0,0,0,0,1.17335854031855,0.63549621259146,0,0,0.161464426695906,0,0.238744688006273,0,0.582961673259701,0.18542530201051,9.7396402054776,0,0.370389054739423,2.26042148405629,5.87785179200408,6.86334519619568,1.86976272993241,2.09927178485487,1.10559979043539,0.954670618015114,0,0,0,0,0,0,0.330613822901344,0,0.388844919875379,3.10669656543463,0,0,0,0,0,0,0,0,0,0,0,84.3749692077236,0.608175645870493,1.23253148597793,14.551132173513,34.5521522638239,70.531880947349,83.0550556182985,83.5922723808107,82.3886231576885,85.1992098402898,90.441088067746,96.3858440516151,98.0398666314957,120.616963051379,0.680191150845634,0,0,0,0.579568782096571,0,0.183151624267265,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0,0.0936415074698824,0.128050304809739,0.516919220600519,0,0.347652977834566,0.192909220463705,0,0.294397840268795,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.0941093804153306,0.507687647350059,0.182927972872773,0.526139422875686,0.135804113845862,0,0,0.0985044823755635,0,0.464810523557898,0.771626443924566,0,0.935726433781634,1.07435527024149,0,0.220591419119515,0.695603506861264
|short_description=p1@Cd6
}}

Latest revision as of 21:02, 1 October 2015

Short description:p1@Cd6
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Cd6_5end
Coexpression cluster:MCL_coexpression_mm9:118
Association with transcript: 0bp_to_ENSMUST00000039043, ENSMUST00000113053_5end
EntrezGene:Cd6
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0
100
200
300
400
500
600




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr19:10904411..10904532,-&oldid=4322104"