FFCP PHASE1:Mm9::chr3:3508005..3508021,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=30942 | |EntrezGene=30942 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=Q059V1,Q9WUU6,Q3UP48 | |UniProt=Q059V1,Q9WUU6,Q3UP48 | ||
|association_with_transcript=-8bp_to_ENSMUST00000017832,ENSMUST00000108393,NM_013920,uc008ony.2_5end | |association_with_transcript=-8bp_to_ENSMUST00000017832,ENSMUST00000108393,NM_013920,uc008ony.2_5end | ||
|cluster_id=chr3:3508005..3508021,+ | |||
|description=CAGE_peak_3_at_Hnf4g_5end | |description=CAGE_peak_3_at_Hnf4g_5end | ||
|id=chr3:3508005..3508021,+ | |id=chr3:3508005..3508021,+ | ||
|ontology_enrichment_celltype=CL:0002563!2.38e-08!9;CL:0002251!2.38e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.19e-15,9;CL:0002251,3.19e-15,9;CL:0000239,1.92e-10,6;CL:0000677,1.92e-10,6;CL:0000584,1.92e-10,6;CL:0000066,1.83e-09,25;CL:0000075,7.73e-09,7;CL:0002076,2.17e-08,15;CL:0000223,3.80e-07,20 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.21e-24!43;UBERON:0005409!3.44e-23!59;UBERON:0000344!1.44e-13!15;UBERON:0001007!2.85e-12!128;UBERON:0001555!2.85e-12!128;UBERON:0007026!2.85e-12!128;UBERON:0001242!7.81e-12!13;UBERON:0000060!7.81e-12!13;UBERON:0001262!7.81e-12!13;UBERON:0004786!7.81e-12!13;UBERON:0004119!9.55e-12!130;UBERON:0000925!9.55e-12!130;UBERON:0006595!9.55e-12!130;UBERON:0004921!4.00e-11!126;UBERON:0004185!4.00e-11!126;UBERON:0003350!2.38e-08!9;UBERON:0004808!2.38e-08!9;UBERON:0001277!2.38e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.46e-48,31;UBERON:0005409,5.77e-40,47;UBERON:0000344,9.67e-26,15;UBERON:0001242,3.08e-22,13;UBERON:0001262,3.08e-22,13;UBERON:0004786,3.08e-22,13;UBERON:0003350,3.19e-15,9;UBERON:0004808,3.19e-15,9;UBERON:0001277,3.19e-15,9;UBERON:0001007,6.56e-15,116;UBERON:0001555,6.56e-15,116;UBERON:0007026,6.56e-15,116;UBERON:0004923,1.39e-14,24;UBERON:0004119,1.70e-14,118;UBERON:0000925,1.70e-14,118;UBERON:0006595,1.70e-14,118;UBERON:0004921,4.82e-13,114;UBERON:0000485,4.13e-12,11;UBERON:0002108,1.76e-08,4 | |||
|phase1_expression=0,3.48975407639361,4.54999239389536,6.65421264875026,7.51343594919521,5.54001597309236,4.67225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,7.1996590257033,9.63518980482114,2.29692785646008,6.46142994238612,8.61884930743556,11.2113817479261,7.81293402255785,5.09980174507201,0,0,0,7.51014211353314,5.15327400611326,8.16677425049476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0,0,0,1.73918693221007,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0.432982082022428,0.253359865475099,0,2.16949371466214,0,0,0,0,0.461230994512117,0,0,0,0,0,0,0,0,0,5.59175283654366,0,0,12.0064815948038,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0.252722758433675,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,16.5209391491899,8.19796756656987,0.639864751605702,0.232236671860439,4.51036114627327,8.26902450955704,9.33987784148455,6.27744566171445,10.9141684155238,5.76446341534038,8.79673230800943,8.35617182572834,7.21367122340745,10.7858329038507,13.6166971421057,14.9355954940775,0,0.456994050438915,0,0.203651327845314,2.13347735884388,0.701358198903186,2.08680572510049,2.65698266363284,3.61097074035162,2.59134044235781,0,0.166845105716094,0,0.224862112384854,0.202860121388503,0.241177159752417,0.50925170356284,0,0,0,0,0.372140947668503,0.312037673114561,1.01031551178845,0.179397413521912,0,0.184753190166605,0,0,0.339490171550376,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0,0.377210159511796,0.295301892880773,0.614870295887855,1.29214146584111,0.363533729477506,0.356497378384721,0.948110273807448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.699599321603,0,0,0,0,0,0,0,0,0,0,0,0,0.813277868507395,1.40406943068342,1.46361807210128,2.18362563746178,0.269728692769641,0.743881101528023,1.57053565190418,5.57344385154709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.19318959403219,0,0.36630324853453,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0.243106717068294,0.209613162627982,0.183843508450014,0.222246727801615,0.412070114477788,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.561849044819294,0.384150914429216,0.631790158511746,1.90517476513229,0.231768651889711,0.38581844092741,0,0.441596760403192,1.02860775715625,0.177475806159338,0.953744759789284,0.436039249896986,0.0941093804153306,0.592302255241736,0.182927972872773,0.789209134313529,0.135804113845862,0,0.355905054372522,0.492522411877817,1.63692417267876,0.77468420592983,0.192906610981141,0,0.701794825336225,0.859484216193193,0.191288332068843,0,0 | |phase1_expression=0,3.48975407639361,4.54999239389536,6.65421264875026,7.51343594919521,5.54001597309236,4.67225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,7.1996590257033,9.63518980482114,2.29692785646008,6.46142994238612,8.61884930743556,11.2113817479261,7.81293402255785,5.09980174507201,0,0,0,7.51014211353314,5.15327400611326,8.16677425049476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0,0,0,1.73918693221007,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0.432982082022428,0.253359865475099,0,2.16949371466214,0,0,0,0,0.461230994512117,0,0,0,0,0,0,0,0,0,5.59175283654366,0,0,12.0064815948038,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0.252722758433675,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,16.5209391491899,8.19796756656987,0.639864751605702,0.232236671860439,4.51036114627327,8.26902450955704,9.33987784148455,6.27744566171445,10.9141684155238,5.76446341534038,8.79673230800943,8.35617182572834,7.21367122340745,10.7858329038507,13.6166971421057,14.9355954940775,0,0.456994050438915,0,0.203651327845314,2.13347735884388,0.701358198903186,2.08680572510049,2.65698266363284,3.61097074035162,2.59134044235781,0,0.166845105716094,0,0.224862112384854,0.202860121388503,0.241177159752417,0.50925170356284,0,0,0,0,0.372140947668503,0.312037673114561,1.01031551178845,0.179397413521912,0,0.184753190166605,0,0,0.339490171550376,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0,0.377210159511796,0.295301892880773,0.614870295887855,1.29214146584111,0.363533729477506,0.356497378384721,0.948110273807448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.699599321603,0,0,0,0,0,0,0,0,0,0,0,0,0.813277868507395,1.40406943068342,1.46361807210128,2.18362563746178,0.269728692769641,0.743881101528023,1.57053565190418,5.57344385154709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.19318959403219,0,0.36630324853453,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0.243106717068294,0.209613162627982,0.183843508450014,0.222246727801615,0.412070114477788,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.561849044819294,0.384150914429216,0.631790158511746,1.90517476513229,0.231768651889711,0.38581844092741,0,0.441596760403192,1.02860775715625,0.177475806159338,0.953744759789284,0.436039249896986,0.0941093804153306,0.592302255241736,0.182927972872773,0.789209134313529,0.135804113845862,0,0.355905054372522,0.492522411877817,1.63692417267876,0.77468420592983,0.192906610981141,0,0.701794825336225,0.859484216193193,0.191288332068843,0,0 | ||
|short_description=p3@Hnf4g | |short_description=p3@Hnf4g | ||
}} | }} |
Latest revision as of 23:21, 1 October 2015
Short description: | p3@Hnf4g |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hnf4g_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -8bp_to_ENSMUST00000017832, ENSMUST00000108393, NM_013920, uc008ony.2_5end |
EntrezGene: | Hnf4g |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.19e-15 | 9 |
epithelial cell of alimentary canal | 3.19e-15 | 9 |
brush border epithelial cell | 1.92e-10 | 6 |
gut absorptive cell | 1.92e-10 | 6 |
enterocyte | 1.92e-10 | 6 |
epithelial cell | 1.83e-09 | 25 |
columnar/cuboidal epithelial cell | 7.73e-09 | 7 |
endo-epithelial cell | 2.17e-08 | 15 |
endodermal cell | 3.80e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.46e-48 | 31 |
gastrointestinal system | 5.77e-40 | 47 |
mucosa | 9.67e-26 | 15 |
intestinal mucosa | 3.08e-22 | 13 |
wall of intestine | 3.08e-22 | 13 |
gastrointestinal system mucosa | 3.08e-22 | 13 |
epithelium of mucosa | 3.19e-15 | 9 |
gastrointestinal system epithelium | 3.19e-15 | 9 |
intestinal epithelium | 3.19e-15 | 9 |
digestive system | 6.56e-15 | 116 |
digestive tract | 6.56e-15 | 116 |
primitive gut | 6.56e-15 | 116 |
organ component layer | 1.39e-14 | 24 |
endoderm-derived structure | 1.70e-14 | 118 |
endoderm | 1.70e-14 | 118 |
presumptive endoderm | 1.70e-14 | 118 |
subdivision of digestive tract | 4.82e-13 | 114 |
simple columnar epithelium | 4.13e-12 | 11 |
small intestine | 1.76e-08 | 4 |