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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000160,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001045,UBERON:0001048,UBERON:0001062,UBERON:0001264,UBERON:0001555,UBERON:0002050,UBERON:0002075,UBERON:0002100,UBERON:0002108,UBERON:0002114,UBERON:0002323,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003921,UBERON:0003922,UBERON:0003923,UBERON:0003924,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004458,UBERON:0004921,UBERON:0005177,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005022
|accession_numbers=CAGE;DRX009065;DRR009939;DRZ001364;DRZ002747;DRZ012714;DRZ014097
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000310,FF:0011255
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!3.12!1331.48!Rbpjl;;chr5:144951153..144951203,+!p1@Bhlha15!2.63!600.25!Bhlha15;;chr2:19367259..19367278,+!p1@Ptf1a!2.39!246.49!Ptf1a;;chr7:19608891..19608895,-!p1@Foxa3!1.79!77.35!Foxa3;;chr9:74709695..74709722,+!p1@Onecut1!1.74!53.63!Onecut1;;chr17:27865882..27865901,-!p1@Spdef!1.60!39.19!Spdef;;chr9:106362954..106362977,+!p6@Pcbp4!1.53!33.00!Pcbp4;;chr10:88969376..88969395,-!p1@Nr1h4!1.43!25.78!Nr1h4;;chr2:163332558..163332596,+!p2@Hnf4a!1.39!23.72!Hnf4a;;chr14:63864056..63864102,-!p1@Gata4!1.38!39.19!Gata4;;chr1:138857076..138857105,-!p1@Nr5a2!1.37!22.69!Nr5a2;;chr2:147871627..147871641,-!p1@Foxa2!1.33!20.63!Foxa2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.31!19.60!Ppard;;chr11:83664365..83664383,+!p1@Hnf1b!1.31!19.60!Hnf1b;;chr1:138857112..138857130,-!p7@Nr5a2!1.29!18.56!Nr5a2;;chr4:133109285..133109308,+!p1@Nr0b2!1.27!17.53!Nr0b2;;chr2:103143336..103143367,-!p1@Ehf!1.25!26.82!Ehf;;chr1:138857048..138857071,-!p2@Nr5a2!1.24!16.50!Nr5a2;;chr5:125538737..125538781,-!p2@Ncor2!1.18!50.54!Ncor2;;chr6:90412582..90412601,+!p1@Klf15!1.15!61.88!Klf15;;chr14:63890491..63890516,-!p2@Gata4!1.09!11.34!Gata4;;chr11:5420655..5420659,+!p3@Xbp1!1.09!11.34!Xbp1;;chr11:5420954..5420969,+!p2@Xbp1!1.08!139.23!Xbp1;;chr5:148081686..148081715,+!p1@Pdx1!1.05!10.31!Pdx1;;chr2:115888250..115888298,-!p10@Meis2!1.04!12.38!Meis2;;chr6:72849280..72849297,-!p6@Kcmf1!1.02!18.56!Kcmf1;;chr7:52471143..52471186,+!p1@Tead2!1.00!97.98!Tead2;;chr5:104121453..104121479,+!p4@Aff1!1.00!42.29!Aff1;;chr6:90412608..90412630,+!p2@Klf15!0.99!18.56!Klf15;;chr18:7004715..7004731,-!p1@Mkx!0.98!20.63!Mkx;;chr14:63890545..63890560,-!p5@Gata4!0.97!8.25!Gata4;;chr14:63890519..63890539,-!p3@Gata4!0.97!8.25!Gata4;;chr2:79296783..79296801,-!p1@Neurod1!0.97!8.25!Neurod1;;chr11:121380640..121380655,-!p1@Zfp750!0.95!13.41!Zfp750;;chr8:124806048..124806094,+!p1@Zfpm1!0.91!68.07!Zfpm1;;chr1:137155026..137155042,-!p1@Elf3!0.91!43.32!Elf3;;chr7:51787434..51787448,-!p1@Spib!0.91!10.31!Spib;;chr2:103143315..103143328,-!p2@Ehf!0.91!7.22!Ehf;;chr1:138846079..138846103,-!p6@Nr5a2!0.91!7.22!Nr5a2;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.88!Mlxipl;;chr11:121380594..121380609,-!p2@Zfp750!0.90!12.38!Zfp750;;chr7:52071956..52071978,-!p1@Atf5!0.88!226.90!Atf5;;chr5:148081667..148081678,+!p3@Pdx1!0.86!6.19!Pdx1;;chr17:28409136..28409150,+!p3@Ppard!0.86!6.19!Ppard;;chr18:74375772..74375799,+!p2@Cxxc1!0.85!18.56!Cxxc1;;chr3:30408674..30408716,-!p2@Mecom!0.85!10.31!Mecom;;chr7:52472041..52472065,+!p2@Tead2!0.85!7.22!Tead2;;chr19:10315179..10315241,-!p1@Gm98!0.84!66.01!Gm98;;chr12:113916993..113917009,+!p2@Zbtb42!0.83!10.31!Zbtb42;;chr11:121380611..121380625,-!p3@Zfp750!0.83!7.22!Zfp750;;chr1:138846047..138846074,-!p5@Nr5a2!0.82!6.19!Nr5a2;;chr2:91864661..91864686,-!p1@Creb3l1!0.81!127.89!Creb3l1;;chr6:146744595..146744613,+!p2@Arntl2!0.80!9.28!Arntl2;;chr1:194979315..194979359,+!p1@Irf6!0.79!34.03!Irf6;;chr18:36441119..36441158,+!p2@Pura!0.79!13.41!Pura;;chr5:115421065..115421088,-!p1@Hnf1a!0.79!5.16!Hnf1a;;chr5:148081722..148081744,+!p2@Pdx1!0.79!5.16!Pdx1;;chr9:96096707..96096772,+!p1@Tfdp2!0.78!83.54!Tfdp2;;chr12:113917014..113917034,+!p1@Zbtb42!0.78!9.28!Zbtb42;;chr2:115890469..115890485,-!p7@Meis2!0.78!8.25!Meis2;;chr8:79423144..79423178,+!p3@Nr3c2!0.78!7.22!Nr3c2;;chr4:154010918..154010931,-!p1@Prdm16!0.77!15.47!Prdm16;;chr14:22807107..22807119,-!p2@Zfp503!0.76!22.69!Zfp503;;chr3:30408384..30408431,-!p4@Mecom!0.76!6.19!Mecom;;chr7:148513409..148513455,-!p2@Deaf1!0.75!23.72!Deaf1;;chr9:96620459..96620478,-!p9@Zbtb38!0.75!5.16!Zbtb38;;chr11:5420973..5420992,+!p1@Xbp1!0.74!524.96!Xbp1;;chr9:48644429..48644462,-!p3@Zbtb16!0.74!9.28!Zbtb16;;chr4:119486912..119486954,+!p3@Hivep3!0.74!8.25!Hivep3;;chr1:172797892..172797915,-!p1@Atf6!0.72!133.04!Atf6;;chr18:11052642..11052659,+!p1@Gata6!0.72!23.72!Gata6;;chr14:22808697..22808715,-!p4@Zfp503!0.72!5.16!Zfp503;;chr9:48644037..48644067,-!p2@Zbtb16!0.71!11.34!Zbtb16;;chr18:74375754..74375763,+!p4@Cxxc1!0.71!5.16!Cxxc1;;chr16:43235969..43235989,+!p20@Zbtb20!0.71!4.13!Zbtb20;;chr2:103264213..103264233,+!p1@Elf5!0.71!4.13!Elf5;;chr1:138846117..138846129,-!p8@Nr5a2!0.71!4.13!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.71!4.13!Hnf1a;;chr8:87425854..87425891,+!p1@Klf1!0.71!4.13!Klf1;;chr9:74709682..74709691,+!p3@Onecut1!0.71!4.13!Onecut1;;chr15:61817095..61817111,+!p1@Myc!0.70!273.31!Myc;;chr8:125897750..125897758,+!p2@Tcf25!0.70!30.94!Tcf25;;chr15:37162796..37162828,+!p1@Grhl2!0.70!7.22!Grhl2;;chr14:22807216..22807231,-!p3@Zfp503!0.70!7.22!Zfp503;;chr19:23215509..23215523,+!p4@Klf9!0.69!5.16!Klf9;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.68!6.19!Mesp2;;chr11:116196664..116196679,-!p1@Foxj1!0.68!6.19!Foxj1;;chr2:168415815..168415872,-!p1@Nfatc2!0.67!22.69!Nfatc2;;chr3:30408603..30408668,-!p1@Mecom!0.67!9.28!Mecom;;chr14:22806778..22806795,-!p5@Zfp503!0.67!4.13!Zfp503;;chr3:94176733..94176794,+!p1@Rorc!0.66!31.97!Rorc;;chr1:138846009..138846038,-!p3@Nr5a2!0.66!4.13!Nr5a2;;chr8:107793737..107793757,+!p2@Hsf4!0.66!4.13!Hsf4;;chr6:72849716..72849805,-!p1@Kcmf1!0.65!50.54!Kcmf1;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.65!39.19!Zfp706;;chr5:34530293..34530318,-!p2@Mxd4!0.65!22.69!Mxd4;;chr3:89197057..89197114,-!p1@Zbtb7b!0.65!13.41!Zbtb7b;;chr6:15135456..15135520,+!p3@Foxp2!0.65!8.25!Foxp2;;chr19:23215673..23215753,+!p1@Klf9!0.64!57.76!Klf9;;chr11:98605517..98605539,+!p5@Thra!0.64!5.16!Thra;;chr6:118429255..118429336,-!p1@Zfp9!0.63!62.91!Zfp9;;chr14:22807083..22807104,-!p1@Zfp503!0.62!67.04!Zfp503;;chr18:80904854..80904919,-!p2@Nfatc1!0.62!45.38!Nfatc1;;chr4:154010409..154010466,-!p2@Prdm16!0.62!8.25!Prdm16;;chr9:69137672..69137702,+!p2@Rora!0.61!15.47!Rora;;chr7:97591412..97591431,+!p2@Crebzf!0.61!9.28!Crebzf;;chr2:151969288..151969294,+!p1@Tcf15!0.61!5.16!Tcf15;;chr1:6720216..6720232,+!p1@St18!0.61!3.09!St18;;chr2:147872074..147872079,-!p4@Foxa2!0.61!3.09!Foxa2;;chr14:63864337..63864381,-!p6@Gata4!0.61!3.09!Gata4;;chr14:63890660..63890687,-!p7@Gata4!0.61!3.09!Gata4;;chr11:83666422..83666446,+!p4@Hnf1b!0.61!3.09!Hnf1b;;chr11:96829969..96829987,-!p2@Sp2!0.61!3.09!Sp2;;chr11:83664334..83664353,+!p2@Hnf1b!0.61!3.09!Hnf1b;;chr9:74709664..74709671,+!p6@Onecut1!0.61!3.09!Onecut1;;chr17:14011485..14011507,+!p2@Mllt4!0.61!3.09!Mllt4;;chr4:154010882..154010889,-!p10@Prdm16!0.61!3.09!Prdm16;;chr6:14851287..14851342,+!p1@Foxp2!0.60!11.34!Foxp2;;chr3:32264530..32264544,-!p2@Zmat3!0.60!5.16!Zmat3;;chr6:134780337..134780355,+!p3@Crebl2!0.60!4.13!Crebl2;;chr1:138845748..138845766,-!p4@Nr5a2!0.60!4.13!Nr5a2;;chr1:69732511..69732540,-!p2@Ikzf2!0.60!4.13!Ikzf2;;chr2:160698288..160698358,-!p3@Zhx3!0.59!10.31!Zhx3;;chr6:90412556..90412581,+!p3@Klf15!0.59!7.22!Klf15;;chr1:194979361..194979373,+!p2@Irf6!0.59!4.13!Irf6;;chr5:34530277..34530292,-!p3@Mxd4!0.58!8.25!Mxd4;;chr5:147760339..147760350,+!p3@Gtf3a!0.57!9.28!Gtf3a;;chr12:25257141..25257173,+!p1@Grhl1!0.56!6.19!Grhl1;;chr14:14845141..14845207,+!p1@Atxn7!0.55!22.69!Atxn7;;chr10:80600749..80600766,+!p2@Zbtb7a!0.55!16.50!Zbtb7a;;chr1:172797864..172797873,-!p2@Atf6!0.55!8.25!Atf6;;chr6:14851440..14851497,+!p2@Foxp2!0.55!7.22!Foxp2;;chr8:73905892..73905903,-!p5@Nr2f6!0.55!3.09!Nr2f6;;chr4:122911056..122911065,+!p2@Heyl!0.54!4.13!Heyl;;chr19:28754692..28754757,-!p1@Glis3!0.53!12.38!Glis3;;chr18:11052606..11052633,+!p4@Gata6!0.53!7.22!Gata6;;chr5:3647720..3647733,-!p3@Gatad1!0.53!5.16!Gatad1;;chr2:27532817..27532828,+!p6@Rxra!0.53!4.13!Rxra;;chr19:23215469..23215494,+!p2@Klf9!0.53!4.13!Klf9;;chr13:30841099..30841116,+!p1@Irf4!0.53!4.13!Irf4;;chr6:15135639..15135655,+!p9@Foxp2!0.53!3.09!Foxp2;;chr9:48644013..48644027,-!p5@Zbtb16!0.53!3.09!Zbtb16;;chr19:5560600..5560617,-!p1@Ovol1!0.53!3.09!Ovol1;;chr8:125897678..125897746,+!p1@Tcf25!0.52!613.66!Tcf25;;chr11:53164378..53164392,+!p2@Aff4!0.52!25.78!Aff4;;chr18:74376000..74376061,+!p3@Cxxc1!0.52!10.31!Cxxc1;;chr11:53164533..53164548,+!p4@Aff4!0.52!8.25!Aff4;;chr1:172797876..172797887,-!p5@Atf6!0.52!6.19!Atf6;;chr2:56976543..56976558,-!p2@Nr4a2!0.52!6.19!Nr4a2;;chr2:104966766..104966786,+!p1@Wt1!0.52!4.13!Wt1;;chr12:100802129..100802145,-!p4@Foxn3!0.52!4.13!Foxn3;;chr10:107769219..107769226,+!p5@Pawr!0.52!3.09!Pawr;;chr9:69137709..69137714,+!p7@Rora!0.52!3.09!Rora;;chr8:124806017..124806040,+!p2@Zfpm1!0.51!31.97!Zfpm1;;chr6:47785649..47785724,+!p1@Zfp398!0.51!23.72!Zfp398;;chr2:38781916..38781974,-!p1@Nr6a1!0.51!8.25!Nr6a1;;chr2:34227446..34227511,-!p1@Pbx3!0.51!6.19!Pbx3;;chr4:61869573..61869595,-!p2@Zfp37!0.51!3.09!Zfp37;;chr2:18314363..18314465,-!p1@Dnajc1!0.50!71.16!Dnajc1;;chr8:87225329..87225396,+!p1@Lyl1!0.50!10.31!Lyl1;;chr16:43363190..43363242,+!p2@Zbtb20!0.50!8.25!Zbtb20;;chr19:23216166..23216191,+!p6@Klf9!0.50!3.09!Klf9;;chr15:36937029..36937108,-!p1@Gm10193,p1@Zfp706!0.49!343.44!Zfp706;;chr5:31262609..31262693,-!p1@Preb!0.49!143.36!Preb;;chr7:35904304..35904320,+!p1@Cebpa!0.49!56.72!Cebpa;;chr5:76733756..76733815,-!p1@Clock!0.49!43.32!Clock;;chr15:81633165..81633188,+!p2@Tef!0.49!22.69!Tef;;chr10:114821444..114821491,-!p1@Thap2!0.49!21.66!Thap2;;chr8:87643578..87643593,-!p1@Zfp791!0.49!5.16!Zfp791;;chr3:89197216..89197258,-!p3@Zbtb7b!0.49!5.16!Zbtb7b;;chr3:30039329..30039355,-!p5@Mecom!0.49!2.06!Mecom;;chr16:43236037..43236050,+!p35@Zbtb20!0.49!2.06!Zbtb20;;chr17:28409059..28409076,+!p6@Ppard!0.49!2.06!Ppard;;chr19:43686789..43686811,+!p1@Nkx2-3!0.49!2.06!Nkx2-3;;chr2:104966874..104966907,+!p2@Wt1!0.49!2.06!Wt1;;chr2:104967357..104967379,+!p9@Wt1!0.49!2.06!Wt1;;chr2:104966933..104966966,+!p3@Wt1!0.49!2.06!Wt1;;chr6:38097380..38097407,-!p6@D630045J12Rik!0.49!2.06!D630045J12Rik;;chr5:144951136..144951139,+!p2@Bhlha15!0.49!2.06!Bhlha15;;chr6:115311308..115311317,+!p10@Pparg!0.49!2.06!Pparg;;chr9:74714303..74714318,+!p2@Onecut1!0.49!2.06!Onecut1;;chr15:102839948..102839975,+!p3@Hoxc6!0.49!2.06!Hoxc6;;chr14:63890459..63890484,-!p4@Gata4!0.49!2.06!Gata4;;chr13:48758276..48758291,+!p1@Barx1!0.49!2.06!Barx1;;chr13:48758358..48758415,+!p2@Barx1!0.49!2.06!Barx1;;chr1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Zfp652;;chr3:87329568..87329589,+!p2@Etv3!0.18!1.03!Etv3;;chr12:85534690..85534708,-!p9@C130039O16Rik!0.18!1.03!C130039O16Rik;;chr13:64254437..64254453,-!p4@Zfp367!0.18!1.03!Zfp367;;chr18:80904923..80904933,-!p3@Nfatc1!0.18!1.03!Nfatc1;;chr19:55817629..55817652,+!p14@Tcf7l2!0.18!1.03!Tcf7l2;;chr19:23215554..23215567,+!p5@Klf9!0.18!1.03!Klf9;;chr7:17200615..17200625,-!p9@Grlf1!0.18!1.03!Grlf1;;chr6:47998938..47998955,-!p2@Zfp777!0.18!1.03!Zfp777;;chr8:87324203..87324206,-!p10@Nfix!0.18!1.03!Nfix;;chr7:52071034..52071052,-!p2@Atf5!0.18!1.03!Atf5;;chr7:19895354..19895369,-!p1@Fosb!0.18!1.03!Fosb;;chr7:31206743..31206761,+!p1@Nfkbid!0.18!1.03!Nfkbid;;chr8:74842952..74842970,+!p1@Klf2!0.17!90.76!Klf2;;chr5:3647838..3648009,-!p1@Gatad1!0.17!77.35!Gatad1;;chr5:147760216..147760292,+!p1@Gtf3a!0.17!59.82!Gtf3a;;chr7:97591284..97591375,+!p1@Crebzf!0.17!43.32!Crebzf;;chr7:31741846..31741930,-!p1@LOC100504922,p1@Usf2!0.17!34.03!Usf2;;chr11:60023912..60023930,-!p1@Srebf1!0.17!31.97!Srebf1;;chr17:4995902..4995959,+!p1@Arid1b!0.17!30.94!Arid1b;;chr1:181733756..181733833,-!p1@Ahctf1!0.17!24.75!Ahctf1;;chr2:17986191..17986271,+!p1@Mllt10!0.17!22.69!Mllt10;;chr9:122795920..122795977,+!p1@Zfp167!0.17!10.31!Zfp167;;chr13:67601387..67601448,-!p2@Zfp58!0.17!10.31!Zfp58;;chr7:13551180..13551243,+!p1@Zfp324!0.17!10.31!Zfp324;;chr4:128483347..128483411,-!p2@Zfp362!0.17!9.28!Zfp362;;chr11:85646303..85646329,+!p1@Tbx2!0.17!8.25!Tbx2;;chr11:70577930..70577985,+!p1@Zfp3!0.17!7.22!Zfp3;;chr14:52640373..52640412,-!p1@Zfp219!0.17!7.22!Zfp219;;chr17:46693153..46693169,-!p2@Srf!0.17!6.19!Srf;;chr7:4866778..4866801,+!p3@Zfp628!0.17!4.13!Zfp628;;chr7:88138532..88138543,+!p3@Zfp592!0.17!3.09!Zfp592;;chr19:26681865..26681900,+!p6@Smarca2!0.17!3.09!Smarca2;;chr2:91864300..91864379,-!p2@Creb3l1!0.17!3.09!Creb3l1;;chr10:20880629..20880683,-!p1@Myb!0.17!3.09!Myb;;chr10:107769750..107769799,+!p2@Pawr!0.17!2.06!Pawr;;chr11:23977565..23977612,+!p5@Bcl11a!0.17!2.06!Bcl11a;;chr4:87678673..87678706,-!p6@Mllt3!0.17!2.06!Mllt3;;chr13:5860740..5860747,+!p4@Klf6!0.17!2.06!Klf6;;chr18:79306029..79306059,-!p2@Setbp1!0.17!2.06!Setbp1;;chr18:64499706..64499721,+!p2@Onecut2!0.17!1.03!Onecut2;;chr2:152758938..152758954,-!p2@Foxs1!0.17!1.03!Foxs1;;chr2:126501184..126501196,-!p6@Gabpb1!0.17!1.03!Gabpb1;;chr13:37917863..37917872,+!p14@Rreb1!0.17!1.03!Rreb1;;chr13:37870253..37870272,+!p13@Rreb1!0.17!1.03!Rreb1;;chr14:67853457..67853482,+!p2@Ebf2!0.17!1.03!Ebf2;;chr10:107769229..107769238,+!p3@Pawr!0.17!1.03!Pawr;;chr11:96180045..96180059,+!p1@Hoxb4!0.17!1.03!Hoxb4;;chr9:111020574..111020687,+!p1@Lrrfip2!0.16!57.76!Lrrfip2;;chr10:127896346..127896384,+!p1@Smarcc2!0.16!50.54!Smarcc2;;chr19:5637736..5637766,+!p1@Rela!0.16!35.07!Rela;;chr6:140571997..140572136,+!p1@Aebp2!0.16!29.91!Aebp2;;chr11:23978022..23978076,+!p1@Bcl11a!0.16!27.85!Bcl11a;;chr8:86590723..86590781,+!p1@Rfx1!0.16!23.72!Rfx1;;chr10:41996494..41996549,-!p1@Foxo3!0.16!21.66!Foxo3;;chr15:102034070..102034124,+!p1@Zfp740!0.16!21.66!Zfp740;;chr15:75771454..75771521,+!p1@Zfp623!0.16!11.34!Zfp623;;chr2:90936901..90936945,+!p1@Sfpi1!0.16!6.19!Sfpi1;;chr10:41996550..41996569,-!p2@Foxo3!0.16!5.16!Foxo3;;chr16:42875952..42875974,+!p4@Zbtb20!0.16!4.13!Zbtb20;;chr9:63869850..63869873,-!p2@Smad6!0.16!3.09!Smad6;;chr17:46520518..46520571,+!p2@Zfp318!0.16!2.06!Zfp318;;chr4:154010940..154010962,-!p3@Prdm16!0.16!2.06!Prdm16;;chr5:134790276..134790294,-!p7@Gtf2i!0.16!2.06!Gtf2i;;chr5:107125778..107125803,-!p4@Zfp644!0.16!2.06!Zfp644;;chr6:92041506..92041517,+!p5@Nr2c2!0.16!1.03!Nr2c2;;chr6:115311030..115311065,+!p4@Pparg!0.16!1.03!Pparg;;chr7:5003102..5003113,+!p4@Zfp580!0.16!1.03!Zfp580;;chr1:87546583..87546595,+!p1@Sp100!0.16!1.03!Sp100;;chr3:9610233..9610247,-!p4@Zfp704!0.16!1.03!Zfp704;;chr16:18587076..18587106,-!p1@Tbx1!0.16!1.03!Tbx1;;chr12:37835120..37835133,+!p2@Meox2!0.16!1.03!Meox2;;chr15:100058302..100058309,+!p3@Gm1862,p5@Atf1!0.16!1.03!Atf1;;chr5:137043112..137043157,-!p1@Cux1!0.15!119.64!Cux1;;chr2:31428295..31428361,+!p1@Fubp3!0.15!34.03!Fubp3;;chr17:4994286..4994373,+!p2@Arid1b!0.15!13.41!Arid1b;;chr17:24592210..24592290,-!p1@E4f1!0.15!12.38!E4f1;;chr1:133904183..133904211,+!p1@Elk4!0.15!10.31!Elk4;;chr9:65675514..65675547,-!p2@Zfp609!0.15!5.16!Zfp609;;chr17:23004042..23004077,-!p2@Zfp945!0.15!4.13!Zfp945;;chr1:172797920..172797931,-!p3@Atf6!0.15!3.09!Atf6;;chr4:151401710..151401733,-!p2@Zbtb48!0.15!3.09!Zbtb48;;chr2:9800207..9800234,-!p1@Gata3!0.15!3.09!Gata3;;chr17:47874123..47874156,+!p2@Tfeb!0.15!2.06!Tfeb;;chr10:13686815..13686846,+!p3@Hivep2!0.15!2.06!Hivep2;;chr14:17407878..17407926,-!p1@Rarb!0.15!2.06!Rarb;;chr1:170361826..170361844,-!p9@Pbx1!0.15!2.06!Pbx1;;chr7:4947724..4947743,-!p3@Zfp579!0.15!2.06!Zfp579;;chr9:68501568..68501592,+!p3@Rora!0.15!2.06!Rora;;chr8:118231350..118231385,-!p7@Maf!0.15!1.03!Maf;;chr11:11585678..11585745,+!p5@Ikzf1!0.15!1.03!Ikzf1;;chr10:22451765..22451795,-!p6@Tbpl1!0.15!1.03!Tbpl1;;chr11:62271274..62271337,-!p4@Ncor1!0.15!1.03!Ncor1;;chr1:4486481..4486501,-!p2@Sox17!0.1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|expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!3.12!1331.48!Rbpjl;;chr5:144951153..144951203,+!p1@Bhlha15!2.63!600.25!Bhlha15;;chr2:19367259..19367278,+!p1@Ptf1a!2.39!246.49!Ptf1a;;chr7:19608891..19608895,-!p1@Foxa3!1.79!77.35!Foxa3;;chr9:74709695..74709722,+!p1@Onecut1!1.74!53.63!Onecut1;;chr17:27865882..27865901,-!p1@Spdef!1.60!39.19!Spdef;;chr9:106362954..106362977,+!p6@Pcbp4!1.53!33.00!Pcbp4;;chr10:88969376..88969395,-!p1@Nr1h4!1.43!25.78!Nr1h4;;chr2:163332558..163332596,+!p2@Hnf4a!1.39!23.72!Hnf4a;;chr14:63864056..63864102,-!p1@Gata4!1.38!39.19!Gata4;;chr1:138857076..138857105,-!p1@Nr5a2!1.37!22.69!Nr5a2;;chr2:147871627..147871641,-!p1@Foxa2!1.33!20.63!Foxa2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.31!19.60!Ppard;;chr11:83664365..83664383,+!p1@Hnf1b!1.31!19.60!Hnf1b;;chr1:138857112..138857130,-!p7@Nr5a2!1.29!18.56!Nr5a2;;chr4:133109285..133109308,+!p1@Nr0b2!1.27!17.53!Nr0b2;;chr2:103143336..103143367,-!p1@Ehf!1.25!26.82!Ehf;;chr1:138857048..138857071,-!p2@Nr5a2!1.24!16.50!Nr5a2;;chr5:125538737..125538781,-!p2@Ncor2!1.18!50.54!Ncor2;;chr6:90412582..90412601,+!p1@Klf15!1.15!61.88!Klf15;;chr14:63890491..63890516,-!p2@Gata4!1.09!11.34!Gata4;;chr11:5420655..5420659,+!p3@Xbp1!1.09!11.34!Xbp1;;chr11:5420954..5420969,+!p2@Xbp1!1.08!139.23!Xbp1;;chr5:148081686..148081715,+!p1@Pdx1!1.05!10.31!Pdx1;;chr2:115888250..115888298,-!p10@Meis2!1.04!12.38!Meis2;;chr6:72849280..72849297,-!p6@Kcmf1!1.02!18.56!Kcmf1;;chr7:52471143..52471186,+!p1@Tead2!1.00!97.98!Tead2;;chr5:104121453..104121479,+!p4@Aff1!1.00!42.29!Aff1;;chr6:90412608..90412630,+!p2@Klf15!0.99!18.56!Klf15;;chr18:7004715..7004731,-!p1@Mkx!0.98!20.63!Mkx;;chr14:63890545..63890560,-!p5@Gata4!0.97!8.25!Gata4;;chr14:63890519..63890539,-!p3@Gata4!0.97!8.25!Gata4;;chr2:79296783..79296801,-!p1@Neurod1!0.97!8.25!Neurod1;;chr11:121380640..121380655,-!p1@Zfp750!0.95!13.41!Zfp750;;chr8:124806048..124806094,+!p1@Zfpm1!0.91!68.07!Zfpm1;;chr1:137155026..137155042,-!p1@Elf3!0.91!43.32!Elf3;;chr7:51787434..51787448,-!p1@Spib!0.91!10.31!Spib;;chr2:103143315..103143328,-!p2@Ehf!0.91!7.22!Ehf;;chr1:138846079..138846103,-!p6@Nr5a2!0.91!7.22!Nr5a2;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.88!Mlxipl;;chr11:121380594..121380609,-!p2@Zfp750!0.90!12.38!Zfp750;;chr7:52071956..52071978,-!p1@Atf5!0.88!226.90!Atf5;;chr5:148081667..148081678,+!p3@Pdx1!0.86!6.19!Pdx1;;chr17:28409136..28409150,+!p3@Ppard!0.86!6.19!Ppard;;chr18:74375772..74375799,+!p2@Cxxc1!0.85!18.56!Cxxc1;;chr3:30408674..30408716,-!p2@Mecom!0.85!10.31!Mecom;;chr7:52472041..52472065,+!p2@Tead2!0.85!7.22!Tead2;;chr19:10315179..10315241,-!p1@Gm98!0.84!66.01!Gm98;;chr12:113916993..113917009,+!p2@Zbtb42!0.83!10.31!Zbtb42;;chr11:121380611..121380625,-!p3@Zfp750!0.83!7.22!Zfp750;;chr1:138846047..138846074,-!p5@Nr5a2!0.82!6.19!Nr5a2;;chr2:91864661..91864686,-!p1@Creb3l1!0.81!127.89!Creb3l1;;chr6:146744595..146744613,+!p2@Arntl2!0.80!9.28!Arntl2;;chr1:194979315..194979359,+!p1@Irf6!0.79!34.03!Irf6;;chr18:36441119..36441158,+!p2@Pura!0.79!13.41!Pura;;chr5:115421065..115421088,-!p1@Hnf1a!0.79!5.16!Hnf1a;;chr5:148081722..148081744,+!p2@Pdx1!0.79!5.16!Pdx1;;chr9:96096707..96096772,+!p1@Tfdp2!0.78!83.54!Tfdp2;;chr12:113917014..113917034,+!p1@Zbtb42!0.78!9.28!Zbtb42;;chr2:115890469..115890485,-!p7@Meis2!0.78!8.25!Meis2;;chr8:79423144..79423178,+!p3@Nr3c2!0.78!7.22!Nr3c2;;chr4:154010918..154010931,-!p1@Prdm16!0.77!15.47!Prdm16;;chr14:22807107..22807119,-!p2@Zfp503!0.76!22.69!Zfp503;;chr3:30408384..30408431,-!p4@Mecom!0.76!6.19!Mecom;;chr7:148513409..148513455,-!p2@Deaf1!0.75!23.72!Deaf1;;chr9:96620459..96620478,-!p9@Zbtb38!0.75!5.16!Zbtb38;;chr11:5420973..5420992,+!p1@Xbp1!0.74!524.96!Xbp1;;chr9:48644429..48644462,-!p3@Zbtb16!0.74!9.28!Zbtb16;;chr4:119486912..119486954,+!p3@Hivep3!0.74!8.25!Hivep3;;chr1:172797892..172797915,-!p1@Atf6!0.72!133.04!Atf6;;chr18:11052642..11052659,+!p1@Gata6!0.72!23.72!Gata6;;chr14:22808697..22808715,-!p4@Zfp503!0.72!5.16!Zfp503;;chr9:48644037..48644067,-!p2@Zbtb16!0.71!11.34!Zbtb16;;chr18:74375754..74375763,+!p4@Cxxc1!0.71!5.16!Cxxc1;;chr16:43235969..43235989,+!p20@Zbtb20!0.71!4.13!Zbtb20;;chr2:103264213..103264233,+!p1@Elf5!0.71!4.13!Elf5;;chr1:138846117..138846129,-!p8@Nr5a2!0.71!4.13!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.71!4.13!Hnf1a;;chr8:87425854..87425891,+!p1@Klf1!0.71!4.13!Klf1;;chr9:74709682..74709691,+!p3@Onecut1!0.71!4.13!Onecut1;;chr15:61817095..61817111,+!p1@Myc!0.70!273.31!Myc;;chr8:125897750..125897758,+!p2@Tcf25!0.70!30.94!Tcf25;;chr15:37162796..37162828,+!p1@Grhl2!0.70!7.22!Grhl2;;chr14:22807216..22807231,-!p3@Zfp503!0.70!7.22!Zfp503;;chr19:23215509..23215523,+!p4@Klf9!0.69!5.16!Klf9;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.68!6.19!Mesp2;;chr11:116196664..116196679,-!p1@Foxj1!0.68!6.19!Foxj1;;chr2:168415815..168415872,-!p1@Nfatc2!0.67!22.69!Nfatc2;;chr3:30408603..30408668,-!p1@Mecom!0.67!9.28!Mecom;;chr14:22806778..22806795,-!p5@Zfp503!0.67!4.13!Zfp503;;chr3:94176733..94176794,+!p1@Rorc!0.66!31.97!Rorc;;chr1:138846009..138846038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Zfp652;;chr3:87329568..87329589,+!p2@Etv3!0.18!1.03!Etv3;;chr12:85534690..85534708,-!p9@C130039O16Rik!0.18!1.03!C130039O16Rik;;chr13:64254437..64254453,-!p4@Zfp367!0.18!1.03!Zfp367;;chr18:80904923..80904933,-!p3@Nfatc1!0.18!1.03!Nfatc1;;chr19:55817629..55817652,+!p14@Tcf7l2!0.18!1.03!Tcf7l2;;chr19:23215554..23215567,+!p5@Klf9!0.18!1.03!Klf9;;chr7:17200615..17200625,-!p9@Grlf1!0.18!1.03!Grlf1;;chr6:47998938..47998955,-!p2@Zfp777!0.18!1.03!Zfp777;;chr8:87324203..87324206,-!p10@Nfix!0.18!1.03!Nfix;;chr7:52071034..52071052,-!p2@Atf5!0.18!1.03!Atf5;;chr7:19895354..19895369,-!p1@Fosb!0.18!1.03!Fosb;;chr7:31206743..31206761,+!p1@Nfkbid!0.18!1.03!Nfkbid;;chr8:74842952..74842970,+!p1@Klf2!0.17!90.76!Klf2;;chr5:3647838..3648009,-!p1@Gatad1!0.17!77.35!Gatad1;;chr5:147760216..147760292,+!p1@Gtf3a!0.17!59.82!Gtf3a;;chr7:97591284..97591375,+!p1@Crebzf!0.17!43.32!Crebzf;;chr7:31741846..31741930,-!p1@LOC100504922,p1@Usf2!0.17!34.03!Usf2;;chr11:60023912..60023930,-!p1@Srebf1!0.17!31.97!Srebf1;;chr17:4995902..4995959,+!p1@Arid1b!0.17!30.94!Arid1b;;chr1:181733756..181733833,-!p1@Ahctf1!0.17!24.75!Ahctf1;;chr2:17986191..17986271,+!p1@Mllt10!0.17!22.69!Mllt10;;chr9:122795920..122795977,+!p1@Zfp167!0.17!10.31!Zfp167;;chr13:67601387..67601448,-!p2@Zfp58!0.17!10.31!Zfp58;;chr7:13551180..13551243,+!p1@Zfp324!0.17!10.31!Zfp324;;chr4:128483347..128483411,-!p2@Zfp362!0.17!9.28!Zfp362;;chr11:85646303..85646329,+!p1@Tbx2!0.17!8.25!Tbx2;;chr11:70577930..70577985,+!p1@Zfp3!0.17!7.22!Zfp3;;chr14:52640373..52640412,-!p1@Zfp219!0.17!7.22!Zfp219;;chr17:46693153..46693169,-!p2@Srf!0.17!6.19!Srf;;chr7:4866778..4866801,+!p3@Zfp628!0.17!4.13!Zfp628;;chr7:88138532..88138543,+!p3@Zfp592!0.17!3.09!Zfp592;;chr19:26681865..26681900,+!p6@Smarca2!0.17!3.09!Smarca2;;chr2:91864300..91864379,-!p2@Creb3l1!0.17!3.09!Creb3l1;;chr10:20880629..20880683,-!p1@Myb!0.17!3.09!Myb;;chr10:107769750..107769799,+!p2@Pawr!0.17!2.06!Pawr;;chr11:23977565..23977612,+!p5@Bcl11a!0.17!2.06!Bcl11a;;chr4:87678673..87678706,-!p6@Mllt3!0.17!2.06!Mllt3;;chr13:5860740..5860747,+!p4@Klf6!0.17!2.06!Klf6;;chr18:79306029..79306059,-!p2@Setbp1!0.17!2.06!Setbp1;;chr18:64499706..64499721,+!p2@Onecut2!0.17!1.03!Onecut2;;chr2:152758938..152758954,-!p2@Foxs1!0.17!1.03!Foxs1;;chr2:126501184..126501196,-!p6@Gabpb1!0.17!1.03!Gabpb1;;chr13:37917863..37917872,+!p14@Rreb1!0.17!1.03!Rreb1;;chr13:37870253..37870272,+!p13@Rreb1!0.17!1.03!Rreb1;;chr14:67853457..67853482,+!p2@Ebf2!0.17!1.03!Ebf2;;chr10:107769229..107769238,+!p3@Pawr!0.17!1.03!Pawr;;chr11:96180045..96180059,+!p1@Hoxb4!0.17!1.03!Hoxb4;;chr9:111020574..111020687,+!p1@Lrrfip2!0.16!57.76!Lrrfip2;;chr10:127896346..127896384,+!p1@Smarcc2!0.16!50.54!Smarcc2;;chr19:5637736..5637766,+!p1@Rela!0.16!35.07!Rela;;chr6:140571997..140572136,+!p1@Aebp2!0.16!29.91!Aebp2;;chr11:23978022..23978076,+!p1@Bcl11a!0.16!27.85!Bcl11a;;chr8:86590723..86590781,+!p1@Rfx1!0.16!23.72!Rfx1;;chr10:41996494..41996549,-!p1@Foxo3!0.16!21.66!Foxo3;;chr15:102034070..102034124,+!p1@Zfp740!0.16!21.66!Zfp740;;chr15:75771454..75771521,+!p1@Zfp623!0.16!11.34!Zfp623;;chr2:90936901..90936945,+!p1@Sfpi1!0.16!6.19!Sfpi1;;chr10:41996550..41996569,-!p2@Foxo3!0.16!5.16!Foxo3;;chr16:42875952..42875974,+!p4@Zbtb20!0.16!4.13!Zbtb20;;chr9:63869850..63869873,-!p2@Smad6!0.16!3.09!Smad6;;chr17:46520518..46520571,+!p2@Zfp318!0.16!2.06!Zfp318;;chr4:154010940..154010962,-!p3@Prdm16!0.16!2.06!Prdm16;;chr5:134790276..134790294,-!p7@Gtf2i!0.16!2.06!Gtf2i;;chr5:107125778..107125803,-!p4@Zfp644!0.16!2.06!Zfp644;;chr6:92041506..92041517,+!p5@Nr2c2!0.16!1.03!Nr2c2;;chr6:115311030..115311065,+!p4@Pparg!0.16!1.03!Pparg;;chr7:5003102..5003113,+!p4@Zfp580!0.16!1.03!Zfp580;;chr1:87546583..87546595,+!p1@Sp100!0.16!1.03!Sp100;;chr3:9610233..9610247,-!p4@Zfp704!0.16!1.03!Zfp704;;chr16:18587076..18587106,-!p1@Tbx1!0.16!1.03!Tbx1;;chr12:37835120..37835133,+!p2@Meox2!0.16!1.03!Meox2;;chr15:100058302..100058309,+!p3@Gm1862,p5@Atf1!0.16!1.03!Atf1;;chr5:137043112..137043157,-!p1@Cux1!0.15!119.64!Cux1;;chr2:31428295..31428361,+!p1@Fubp3!0.15!34.03!Fubp3;;chr17:4994286..4994373,+!p2@Arid1b!0.15!13.41!Arid1b;;chr17:24592210..24592290,-!p1@E4f1!0.15!12.38!E4f1;;chr1:133904183..133904211,+!p1@Elk4!0.15!10.31!Elk4;;chr9:65675514..65675547,-!p2@Zfp609!0.15!5.16!Zfp609;;chr17:23004042..23004077,-!p2@Zfp945!0.15!4.13!Zfp945;;chr1:172797920..172797931,-!p3@Atf6!0.15!3.09!Atf6;;chr4:151401710..151401733,-!p2@Zbtb48!0.15!3.09!Zbtb48;;chr2:9800207..9800234,-!p1@Gata3!0.15!3.09!Gata3;;chr17:47874123..47874156,+!p2@Tfeb!0.15!2.06!Tfeb;;chr10:13686815..13686846,+!p3@Hivep2!0.15!2.06!Hivep2;;chr14:17407878..17407926,-!p1@Rarb!0.15!2.06!Rarb;;chr1:170361826..170361844,-!p9@Pbx1!0.15!2.06!Pbx1;;chr7:4947724..4947743,-!p3@Zfp579!0.15!2.06!Zfp579;;chr9:68501568..68501592,+!p3@Rora!0.15!2.06!Rora;;chr8:118231350..118231385,-!p7@Maf!0.15!1.03!Maf;;chr11:11585678..11585745,+!p5@Ikzf1!0.15!1.03!Ikzf1;;chr10:22451765..22451795,-!p6@Tbpl1!0.15!1.03!Tbpl1;;chr11:62271274..62271337,-!p4@Ncor1!0.15!1.03!Ncor1;;chr1:4486481..4486501,-!p2@Sox17!0.1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|ffid_belonging_in_development=FF:0000294
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 42:
|has_quality=
|has_quality=
|id=FF:1548-44H5
|id=FF:1548-44H5
|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011255
|is_a=EFO:0002091;;FF:0011255
|is_obsolete=
|library_id=CNhs11182
|library_id_phase_based=2:CNhs11182
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1548
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1548
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm10.nobarcode.bam
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm10.nobarcode.ctss.bed.gz
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm9.nobarcode.bam
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm9.ctss.bed.gz
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm9.nobarcode.rdna.fa.gz
|name=pancreas, neonate N30
|name=pancreas, neonate N30
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11182,LSID746,release008,COMPLETED
|profile_hcage=CNhs11182,LSID746,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|repeat_enrich_byfamily=0.27915036320286,0,0,0,0,0,0.066130800554661,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0.307785919889371,0,0,2.02611737705376,0,0,0,0,0,0,0.0537320788265062,0,0,0,0,0,-0.0554297655511405,-0.0408035844752772,0.00638775265012437,-0.372056495327289,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,0.420100451633668,0,0,0,0,0,0,0,0,0,0,-0.117389802908326,-0.00286473745001542,-0.158091042771083,-0.0484934614802503,0,0,0,0.0680108709698444,0,0,0,0.100958681945302,0.672031837461961,-0.0788315948399074,0,0,0,0,0,0,0.664150587967436,0.925619572622186,0.693662381532318,0,0,0,0,0
|rna_box=44
|rna_box=44
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 76:
|rna_weight_ug=
|rna_weight_ug=
|sample_age=
|sample_age=
|sample_category=developmental
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 76: Line 96:
|sample_tissue=pancreas
|sample_tissue=pancreas
|top_motifs=RXRA_VDR{dimer}:3.43300893602;RBPJ:2.92711966683;ATF6:2.68165701432;ARID5B:2.40539659159;MYOD1:2.12008941767;NR1H4:2.00733999612;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.98247922778;EN1,2:1.97921346601;bHLH_family:1.88343039049;SNAI1..3:1.7621394134;CDX1,2,4:1.73848325424;STAT5{A,B}:1.72884985223;GCM1,2:1.71386310544;LMO2:1.54235823686;PDX1:1.49134199993;TAL1_TCF{3,4,12}:1.41335700548;TLX2:1.32191220176;MAFB:1.30533841282;ZEB1:1.30421992202;HOX{A5,B5}:1.29383821744;STAT1,3:1.21501384348;PAX1,9:1.06801942504;NR5A1,2:0.960437875462;HOX{A4,D4}:0.936588131447;CEBPA,B_DDIT3:0.931631208596;FOXO1,3,4:0.928809543118;GATA6:0.906710770254;PAX8:0.871381997789;FOXA2:0.843472654082;ALX4:0.69186580422;PBX1:0.665936439882;TEF:0.648954161923;PAX6:0.64230594914;NR6A1:0.641122400628;ESR1:0.622747447126;MYBL2:0.607107122011;NFIL3:0.538711727701;ZNF238:0.511773213852;HNF1A:0.496948872181;GZF1:0.484765811943;FOXQ1:0.47374912868;AR:0.463428873526;NKX3-2:0.463226722336;HOXA9_MEIS1:0.445257014;FOX{D1,D2}:0.402091632503;FOXM1:0.389225264859;YY1:0.311385507642;T:0.295385349439;XCPE1{core}:0.266665113531;TOPORS:0.265325156585;ALX1:0.258677120451;HLF:0.24733087374;MTE{core}:0.223471320906;HAND1,2:0.214634844396;TFAP4:0.196614205549;ELF1,2,4:0.190046828679;ZBTB6:0.187693137992;ONECUT1,2:0.167018160452;STAT2,4,6:0.166511446597;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.140144605751;AIRE:0.135796044775;TFAP2B:0.128543958457;DBP:0.111219536191;BACH2:0.102696834941;TBP:0.10227751334;CRX:0.0893051674276;NFE2L2:0.0668078469612;DMAP1_NCOR{1,2}_SMARC:0.0564845473694;ZBTB16:0.0525480544157;NHLH1,2:0.0335308557701;HBP1_HMGB_SSRP1_UBTF:0.0144822711959;ETS1,2:0.00988395501143;ZNF148:-0.0253851888275;SP1:-0.0343615712281;NFE2:-0.0432994665124;NFIX:-0.059537050871;TEAD1:-0.0783565525095;MTF1:-0.0936903780069;RORA:-0.10515307613;ESRRA:-0.119640018958;LEF1_TCF7_TCF7L1,2:-0.121446615312;ELK1,4_GABP{A,B1}:-0.133476139096;CREB1:-0.153855198371;ZIC1..3:-0.16749604981;HMX1:-0.178513165308;HES1:-0.181824358206;NFKB1_REL_RELA:-0.194078154423;HSF1,2:-0.195632659822;TP53:-0.19622978046;SPIB:-0.200780304822;POU2F1..3:-0.202990253673;SMAD1..7,9:-0.219378903208;HNF4A_NR2F1,2:-0.232072822447;ADNP_IRX_SIX_ZHX:-0.236457999873;GTF2A1,2:-0.240937607715;BPTF:-0.243802168401;PPARG:-0.273504104234;FOX{F1,F2,J1}:-0.278112054172;ATF5_CREB3:-0.279488835397;UFEwm:-0.289509291828;MYFfamily:-0.301287966307;NFATC1..3:-0.314927742069;GLI1..3:-0.319220049879;RUNX1..3:-0.321652692715;POU5F1:-0.344386630393;IRF1,2:-0.348713097052;ZNF143:-0.350950148154;TLX1..3_NFIC{dimer}:-0.361679830737;POU1F1:-0.368468050236;REST:-0.372134755107;TGIF1:-0.376704176379;FOX{I1,J2}:-0.395553239946;HIF1A:-0.400643567508;RFX1:-0.402564299207;IKZF1:-0.403297133854;SPZ1:-0.409926301616;PAX4:-0.423371362693;GTF2I:-0.433765097184;PAX5:-0.445847815853;HIC1:-0.4491451989;ATF4:-0.455278740027;NKX2-2,8:-0.465288281155;MED-1{core}:-0.485214509351;LHX3,4:-0.493635628001;TFAP2{A,C}:-0.514103284299;MYB:-0.523398261;SPI1:-0.53061213332;NANOG:-0.536078763801;ATF2:-0.545620155968;FOXP1:-0.554645094246;MEF2{A,B,C,D}:-0.556681805136;FOS_FOS{B,L1}_JUN{B,D}:-0.556927616219;PRDM1:-0.560957783079;OCT4_SOX2{dimer}:-0.606439888822;SOX5:-0.606684401494;IRF7:-0.612860955165;FOXN1:-0.626684008305;PATZ1:-0.631358752452;TFCP2:-0.634065807064;MAZ:-0.638705472341;NRF1:-0.644374606636;HMGA1,2:-0.645002282569;FOSL2:-0.64746149456;PAX2:-0.671648075393;PRRX1,2:-0.676483981775;EGR1..3:-0.692598634944;SOX2:-0.704737555167;NKX3-1:-0.708162312452;AHR_ARNT_ARNT2:-0.712406416443;NR3C1:-0.712576329034;FOXD3:-0.759575723882;ZFP161:-0.769774653055;SOX17:-0.782293011572;E2F1..5:-0.78265137893;NANOG{mouse}:-0.783072443499;POU6F1:-0.786648818947;IKZF2:-0.799461515909;NFY{A,B,C}:-0.808790268325;TFDP1:-0.848838945569;CDC5L:-0.851159599754;GATA4:-0.88086356375;GFI1:-0.905197129932;SOX{8,9,10}:-0.916677067893;GFI1B:-0.930204670689;ZNF423:-0.942932491915;SREBF1,2:-0.945883576122;RFX2..5_RFXANK_RFXAP:-0.947610290381;JUN:-0.94983794499;PITX1..3:-0.950152427162;BREu{core}:-0.969241744851;ZNF384:-0.982879527509;CUX2:-0.983793428206;EBF1:-0.994790698148;RXR{A,B,G}:-1.00560119984;SRF:-1.01585609782;EVI1:-1.03917173766;MZF1:-1.07575473097;FOXP3:-1.08338652406;NKX6-1,2:-1.14394827439;KLF4:-1.16813024871;RREB1:-1.17266867437;VSX1,2:-1.26847659107;NKX2-1,4:-1.29118121073;POU3F1..4:-1.47717626855;NKX2-3_NKX2-5:-1.47815430124;EP300:-1.63179286762;FOXL1:-1.64679222085;TBX4,5:-1.7134771511;NFE2L1:-1.72013521101
|top_motifs=RXRA_VDR{dimer}:3.43300893602;RBPJ:2.92711966683;ATF6:2.68165701432;ARID5B:2.40539659159;MYOD1:2.12008941767;NR1H4:2.00733999612;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.98247922778;EN1,2:1.97921346601;bHLH_family:1.88343039049;SNAI1..3:1.7621394134;CDX1,2,4:1.73848325424;STAT5{A,B}:1.72884985223;GCM1,2:1.71386310544;LMO2:1.54235823686;PDX1:1.49134199993;TAL1_TCF{3,4,12}:1.41335700548;TLX2:1.32191220176;MAFB:1.30533841282;ZEB1:1.30421992202;HOX{A5,B5}:1.29383821744;STAT1,3:1.21501384348;PAX1,9:1.06801942504;NR5A1,2:0.960437875462;HOX{A4,D4}:0.936588131447;CEBPA,B_DDIT3:0.931631208596;FOXO1,3,4:0.928809543118;GATA6:0.906710770254;PAX8:0.871381997789;FOXA2:0.843472654082;ALX4:0.69186580422;PBX1:0.665936439882;TEF:0.648954161923;PAX6:0.64230594914;NR6A1:0.641122400628;ESR1:0.622747447126;MYBL2:0.607107122011;NFIL3:0.538711727701;ZNF238:0.511773213852;HNF1A:0.496948872181;GZF1:0.484765811943;FOXQ1:0.47374912868;AR:0.463428873526;NKX3-2:0.463226722336;HOXA9_MEIS1:0.445257014;FOX{D1,D2}:0.402091632503;FOXM1:0.389225264859;YY1:0.311385507642;T:0.295385349439;XCPE1{core}:0.266665113531;TOPORS:0.265325156585;ALX1:0.258677120451;HLF:0.24733087374;MTE{core}:0.223471320906;HAND1,2:0.214634844396;TFAP4:0.196614205549;ELF1,2,4:0.190046828679;ZBTB6:0.187693137992;ONECUT1,2:0.167018160452;STAT2,4,6:0.166511446597;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.140144605751;AIRE:0.135796044775;TFAP2B:0.128543958457;DBP:0.111219536191;BACH2:0.102696834941;TBP:0.10227751334;CRX:0.0893051674276;NFE2L2:0.0668078469612;DMAP1_NCOR{1,2}_SMARC:0.0564845473694;ZBTB16:0.0525480544157;NHLH1,2:0.0335308557701;HBP1_HMGB_SSRP1_UBTF:0.0144822711959;ETS1,2:0.00988395501143;ZNF148:-0.0253851888275;SP1:-0.0343615712281;NFE2:-0.0432994665124;NFIX:-0.059537050871;TEAD1:-0.0783565525095;MTF1:-0.0936903780069;RORA:-0.10515307613;ESRRA:-0.119640018958;LEF1_TCF7_TCF7L1,2:-0.121446615312;ELK1,4_GABP{A,B1}:-0.133476139096;CREB1:-0.153855198371;ZIC1..3:-0.16749604981;HMX1:-0.178513165308;HES1:-0.181824358206;NFKB1_REL_RELA:-0.194078154423;HSF1,2:-0.195632659822;TP53:-0.19622978046;SPIB:-0.200780304822;POU2F1..3:-0.202990253673;SMAD1..7,9:-0.219378903208;HNF4A_NR2F1,2:-0.232072822447;ADNP_IRX_SIX_ZHX:-0.236457999873;GTF2A1,2:-0.240937607715;BPTF:-0.243802168401;PPARG:-0.273504104234;FOX{F1,F2,J1}:-0.278112054172;ATF5_CREB3:-0.279488835397;UFEwm:-0.289509291828;MYFfamily:-0.301287966307;NFATC1..3:-0.314927742069;GLI1..3:-0.319220049879;RUNX1..3:-0.321652692715;POU5F1:-0.344386630393;IRF1,2:-0.348713097052;ZNF143:-0.350950148154;TLX1..3_NFIC{dimer}:-0.361679830737;POU1F1:-0.368468050236;REST:-0.372134755107;TGIF1:-0.376704176379;FOX{I1,J2}:-0.395553239946;HIF1A:-0.400643567508;RFX1:-0.402564299207;IKZF1:-0.403297133854;SPZ1:-0.409926301616;PAX4:-0.423371362693;GTF2I:-0.433765097184;PAX5:-0.445847815853;HIC1:-0.4491451989;ATF4:-0.455278740027;NKX2-2,8:-0.465288281155;MED-1{core}:-0.485214509351;LHX3,4:-0.493635628001;TFAP2{A,C}:-0.514103284299;MYB:-0.523398261;SPI1:-0.53061213332;NANOG:-0.536078763801;ATF2:-0.545620155968;FOXP1:-0.554645094246;MEF2{A,B,C,D}:-0.556681805136;FOS_FOS{B,L1}_JUN{B,D}:-0.556927616219;PRDM1:-0.560957783079;OCT4_SOX2{dimer}:-0.606439888822;SOX5:-0.606684401494;IRF7:-0.612860955165;FOXN1:-0.626684008305;PATZ1:-0.631358752452;TFCP2:-0.634065807064;MAZ:-0.638705472341;NRF1:-0.644374606636;HMGA1,2:-0.645002282569;FOSL2:-0.64746149456;PAX2:-0.671648075393;PRRX1,2:-0.676483981775;EGR1..3:-0.692598634944;SOX2:-0.704737555167;NKX3-1:-0.708162312452;AHR_ARNT_ARNT2:-0.712406416443;NR3C1:-0.712576329034;FOXD3:-0.759575723882;ZFP161:-0.769774653055;SOX17:-0.782293011572;E2F1..5:-0.78265137893;NANOG{mouse}:-0.783072443499;POU6F1:-0.786648818947;IKZF2:-0.799461515909;NFY{A,B,C}:-0.808790268325;TFDP1:-0.848838945569;CDC5L:-0.851159599754;GATA4:-0.88086356375;GFI1:-0.905197129932;SOX{8,9,10}:-0.916677067893;GFI1B:-0.930204670689;ZNF423:-0.942932491915;SREBF1,2:-0.945883576122;RFX2..5_RFXANK_RFXAP:-0.947610290381;JUN:-0.94983794499;PITX1..3:-0.950152427162;BREu{core}:-0.969241744851;ZNF384:-0.982879527509;CUX2:-0.983793428206;EBF1:-0.994790698148;RXR{A,B,G}:-1.00560119984;SRF:-1.01585609782;EVI1:-1.03917173766;MZF1:-1.07575473097;FOXP3:-1.08338652406;NKX6-1,2:-1.14394827439;KLF4:-1.16813024871;RREB1:-1.17266867437;VSX1,2:-1.26847659107;NKX2-1,4:-1.29118121073;POU3F1..4:-1.47717626855;NKX2-3_NKX2-5:-1.47815430124;EP300:-1.63179286762;FOXL1:-1.64679222085;TBX4,5:-1.7134771511;NFE2L1:-1.72013521101
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1548-44H5;search_select_hide=table117:1548-44H5
}}
}}

Latest revision as of 19:08, 4 June 2020


Name:pancreas, neonate N30
Species:Mouse (Mus musculus)
Library ID:CNhs11182
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage30 days neonate
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005022
CollapseLibrary accession numbers

Library idMethodExp. accession idRun accession id
CNhs11182 CAGE DRX009065 DRR009939
CollapseAccession ID Mm9

Library idBAMCTSS
CNhs11182 DRZ001364 DRZ002747
CollapseAccession ID Mm10

Library idBAMCTSS
CNhs11182 DRZ012714 DRZ014097
Download raw sequence, BAM & CTSS
CollapseMm9
FastaBAMCTSS
downloaddownloaddonwload
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BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

CNhs11182



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11182



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11182



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11182


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000310 (mouse neonate N30 sample)
0011255 (mouse pancreas- neonate N30 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)