FFCP PHASE1:Mm9::chr2:118598502..118598516,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=53906 | |EntrezGene=53906 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=126 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K0G7 | |UniProt=Q8K0G7 | ||
|association_with_transcript=0bp_to_ENSMUST00000061360,ENSMUST00000130293,NM_001145644,uc008lso.2_5end | |association_with_transcript=0bp_to_ENSMUST00000061360,ENSMUST00000130293,NM_001145644,uc008lso.2_5end | ||
|cluster_id=chr2:118598502..118598516,+ | |||
|description=CAGE_peak_1_at_Phgr1_5end | |description=CAGE_peak_1_at_Phgr1_5end | ||
|id=chr2:118598502..118598516,+ | |id=chr2:118598502..118598516,+ | ||
|ontology_enrichment_celltype=CL:0002563!2.67e-09!9;CL:0002251!2.67e-09!9;CL:0002076!5.71e-08!15;CL:0000239!5.13e-07!6;CL:0000677!5.13e-07!6;CL:0000212!5.13e-07!6;CL:0000584!5.13e-07!6 | |ontology_enrichment_celltype=CL:0002563!2.67e-09!9;CL:0002251!2.67e-09!9;CL:0002076!5.71e-08!15;CL:0000239!5.13e-07!6;CL:0000677!5.13e-07!6;CL:0000212!5.13e-07!6;CL:0000584!5.13e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.02e-12,9;CL:0002251,2.02e-12,9;CL:0002076,3.17e-11,15;CL:0000066,1.95e-09,25;CL:0000239,3.17e-09,6;CL:0000677,3.17e-09,6;CL:0000584,3.17e-09,6;CL:0000075,1.01e-07,7;CL:0000223,1.39e-07,20 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.15e-17!59;UBERON:0000160!1.31e-15!43;UBERON:0000344!4.55e-15!15;UBERON:0004119!9.83e-14!130;UBERON:0000925!9.83e-14!130;UBERON:0006595!9.83e-14!130;UBERON:0001007!1.66e-13!128;UBERON:0001555!1.66e-13!128;UBERON:0007026!1.66e-13!128;UBERON:0001242!3.94e-13!13;UBERON:0000060!3.94e-13!13;UBERON:0001262!3.94e-13!13;UBERON:0004786!3.94e-13!13;UBERON:0004921!3.16e-12!126;UBERON:0004185!3.16e-12!126;UBERON:0004923!1.34e-09!24;UBERON:0003350!2.67e-09!9;UBERON:0004808!2.67e-09!9;UBERON:0001277!2.67e-09!9;UBERON:0000485!5.06e-07!11 | |ontology_enrichment_uberon=UBERON:0005409!2.15e-17!59;UBERON:0000160!1.31e-15!43;UBERON:0000344!4.55e-15!15;UBERON:0004119!9.83e-14!130;UBERON:0000925!9.83e-14!130;UBERON:0006595!9.83e-14!130;UBERON:0001007!1.66e-13!128;UBERON:0001555!1.66e-13!128;UBERON:0007026!1.66e-13!128;UBERON:0001242!3.94e-13!13;UBERON:0000060!3.94e-13!13;UBERON:0001262!3.94e-13!13;UBERON:0004786!3.94e-13!13;UBERON:0004921!3.16e-12!126;UBERON:0004185!3.16e-12!126;UBERON:0004923!1.34e-09!24;UBERON:0003350!2.67e-09!9;UBERON:0004808!2.67e-09!9;UBERON:0001277!2.67e-09!9;UBERON:0000485!5.06e-07!11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.11e-33,31;UBERON:0005409,8.82e-33,47;UBERON:0000344,1.60e-20,15;UBERON:0001242,8.47e-18,13;UBERON:0001262,8.47e-18,13;UBERON:0004786,8.47e-18,13;UBERON:0004923,3.02e-14,24;UBERON:0004119,3.07e-14,118;UBERON:0000925,3.07e-14,118;UBERON:0006595,3.07e-14,118;UBERON:0001007,7.47e-14,116;UBERON:0001555,7.47e-14,116;UBERON:0007026,7.47e-14,116;UBERON:0003350,2.02e-12,9;UBERON:0004808,2.02e-12,9;UBERON:0001277,2.02e-12,9;UBERON:0004921,2.79e-12,114;UBERON:0000485,1.04e-09,11;UBERON:0002108,8.95e-07,4 | |||
|phase1_expression=0,197.869056131518,262.534561127762,447.647032734108,509.410957355435,162.339255938797,296.921666196913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,299.985792737637,438.401136119362,399.091215059939,362.270838769782,197.156177907588,1762.84726229678,556.482526509927,264.302768701123,0,0,0,38.7061170466708,70.6497242773593,38.3838389773254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.4711072210803,0,0,0,0,0,0,0,7.14420435337007,5.06719730950197,8.08839112023653,36.6530253898183,0,0,0,0,0.922461989024234,0,0,0.125666591329675,73.1697104493747,0,0,0.323533699894818,0,0,840.626843093731,0,0,233.232291405444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0.378212160335639,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,202.216295186084,148.621218464912,0,0,5.54130083685001,13.3111126251406,15.3440850252961,18.6421113590308,111.039800401416,28.8223170767019,24.8821856712267,14.523822459004,27.1000081095577,104.26305140389,221.109225021812,197.946425614841,0,0,0,0.203651327845314,0,0,0,0,0,0,1.1858105083486,0,0.393117990226406,0,0.202860121388503,0,0.25462585178142,0.863088412352432,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0.554259570499814,0,0,0,0,2.01007508930179,6.9032655856944,1.56106918286239,0,0.44292937929755,0,0.163863314715738,0.518054945597687,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,2.06742634534577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.08396970073168,0,0,0,0,0,0.328281799490123,85.1124042959164,0,0,0,0,0,0,0,0,0,0,70.6456257331184,0,0.813277868507395,7.23635783506068,10.0362382086945,21.3995312471254,24.4104466956525,19.0102948168273,29.0549095602273,325.074353015816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0.100966449948148,0.15241361331,0.100826185136841,0.0974578807397524,0.0962118416403295,0.233753804363138,0,0,0.0897138566094757,0,0.19318959403219,0.187682475451182,0,1.50057865355346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.972426868273176,0.419226325255965,1.2869045591501,2.00022055021454,1.85431551515005,0.64183841918363,1.01078884705519,0.50695859978048,1.13175804831646,1.03005658216871,0.512201219238954,0.516919220600519,1.90517476513229,1.39061191133827,0.964546102318525,2.88460130562315,1.76638704161277,2.05721551431249,1.59728225543404,0.953744759789284,1.0174249164263,1.12931256498397,0.930760686808441,1.28049581010941,1.05227884575137,0.950628796921032,2.24456908663095,0.830445126869219,0.886540341380071,1.63692417267876,0.309873682371932,1.35034627686799,0,2.57324769289949,1.50409737833809,0.956441660344217,0.220591419119515,0 | |phase1_expression=0,197.869056131518,262.534561127762,447.647032734108,509.410957355435,162.339255938797,296.921666196913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,299.985792737637,438.401136119362,399.091215059939,362.270838769782,197.156177907588,1762.84726229678,556.482526509927,264.302768701123,0,0,0,38.7061170466708,70.6497242773593,38.3838389773254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.4711072210803,0,0,0,0,0,0,0,7.14420435337007,5.06719730950197,8.08839112023653,36.6530253898183,0,0,0,0,0.922461989024234,0,0,0.125666591329675,73.1697104493747,0,0,0.323533699894818,0,0,840.626843093731,0,0,233.232291405444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0.378212160335639,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,202.216295186084,148.621218464912,0,0,5.54130083685001,13.3111126251406,15.3440850252961,18.6421113590308,111.039800401416,28.8223170767019,24.8821856712267,14.523822459004,27.1000081095577,104.26305140389,221.109225021812,197.946425614841,0,0,0,0.203651327845314,0,0,0,0,0,0,1.1858105083486,0,0.393117990226406,0,0.202860121388503,0,0.25462585178142,0.863088412352432,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0.554259570499814,0,0,0,0,2.01007508930179,6.9032655856944,1.56106918286239,0,0.44292937929755,0,0.163863314715738,0.518054945597687,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,2.06742634534577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.08396970073168,0,0,0,0,0,0.328281799490123,85.1124042959164,0,0,0,0,0,0,0,0,0,0,70.6456257331184,0,0.813277868507395,7.23635783506068,10.0362382086945,21.3995312471254,24.4104466956525,19.0102948168273,29.0549095602273,325.074353015816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0.100966449948148,0.15241361331,0.100826185136841,0.0974578807397524,0.0962118416403295,0.233753804363138,0,0,0.0897138566094757,0,0.19318959403219,0.187682475451182,0,1.50057865355346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.972426868273176,0.419226325255965,1.2869045591501,2.00022055021454,1.85431551515005,0.64183841918363,1.01078884705519,0.50695859978048,1.13175804831646,1.03005658216871,0.512201219238954,0.516919220600519,1.90517476513229,1.39061191133827,0.964546102318525,2.88460130562315,1.76638704161277,2.05721551431249,1.59728225543404,0.953744759789284,1.0174249164263,1.12931256498397,0.930760686808441,1.28049581010941,1.05227884575137,0.950628796921032,2.24456908663095,0.830445126869219,0.886540341380071,1.63692417267876,0.309873682371932,1.35034627686799,0,2.57324769289949,1.50409737833809,0.956441660344217,0.220591419119515,0 | ||
|short_description=p1@Phgr1 | |short_description=p1@Phgr1 | ||
}} | }} |
Latest revision as of 13:53, 25 September 2015
Short description: | p1@Phgr1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Phgr1_5end |
Coexpression cluster: | MCL_coexpression_mm9:126 |
Association with transcript: | 0bp_to_ENSMUST00000061360, ENSMUST00000130293, NM_001145644, uc008lso.2_5end |
EntrezGene: | Phgr1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.02e-12 | 9 |
epithelial cell of alimentary canal | 2.02e-12 | 9 |
endo-epithelial cell | 3.17e-11 | 15 |
epithelial cell | 1.95e-09 | 25 |
brush border epithelial cell | 3.17e-09 | 6 |
gut absorptive cell | 3.17e-09 | 6 |
enterocyte | 3.17e-09 | 6 |
columnar/cuboidal epithelial cell | 1.01e-07 | 7 |
endodermal cell | 1.39e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 6.11e-33 | 31 |
gastrointestinal system | 8.82e-33 | 47 |
mucosa | 1.60e-20 | 15 |
intestinal mucosa | 8.47e-18 | 13 |
wall of intestine | 8.47e-18 | 13 |
gastrointestinal system mucosa | 8.47e-18 | 13 |
organ component layer | 3.02e-14 | 24 |
endoderm-derived structure | 3.07e-14 | 118 |
endoderm | 3.07e-14 | 118 |
presumptive endoderm | 3.07e-14 | 118 |
digestive system | 7.47e-14 | 116 |
digestive tract | 7.47e-14 | 116 |
primitive gut | 7.47e-14 | 116 |
epithelium of mucosa | 2.02e-12 | 9 |
gastrointestinal system epithelium | 2.02e-12 | 9 |
intestinal epithelium | 2.02e-12 | 9 |
subdivision of digestive tract | 2.79e-12 | 114 |
simple columnar epithelium | 1.04e-09 | 11 |
small intestine | 8.95e-07 | 4 |