FFCP PHASE1:Hg19::chr16:2030183..2030227,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:2030183..2030227,- | |||
|coexpression_cluster_id=C2363 | |||
|description=CAGE_peak_at_chr16:2030183..2030227,- | |description=CAGE_peak_at_chr16:2030183..2030227,- | ||
|id=chr16:2030183..2030227,- | |id=chr16:2030183..2030227,- | ||
|ontology_enrichment_celltype=CL:0000066!6.22e-15!254;CL:0002328!7.33e-10!3;CL:0002076!9.50e-10!43;CL:0002202!2.81e-08!9;CL:0002632!2.81e-08!9;CL:0002368!1.34e-07!13;CL:0000240!1.97e-07!6;CL:0000311!1.97e-07!6;CL:0000079!1.97e-07!6;CL:0000237!1.97e-07!6;CL:0000036!1.97e-07!6;CL:0000357!1.97e-07!6;CL:0000114!1.97e-07!6;CL:0000223!2.33e-07!59;CL:0002159!3.79e-07!13;CL:0000575!5.83e-07!2;CL:0000076!7.70e-07!62 | |ontology_enrichment_celltype=CL:0000066!6.22e-15!254;CL:0002328!7.33e-10!3;CL:0002076!9.50e-10!43;CL:0002202!2.81e-08!9;CL:0002632!2.81e-08!9;CL:0002368!1.34e-07!13;CL:0000240!1.97e-07!6;CL:0000311!1.97e-07!6;CL:0000079!1.97e-07!6;CL:0000237!1.97e-07!6;CL:0000036!1.97e-07!6;CL:0000357!1.97e-07!6;CL:0000114!1.97e-07!6;CL:0000223!2.33e-07!59;CL:0002159!3.79e-07!13;CL:0000575!5.83e-07!2;CL:0000076!7.70e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002252;6.31e-21;1!CL:0000082;4.51e-10;19!CL:0002202;8.46e-10;9!CL:0002632;8.46e-10;9!CL:0002328;5.18e-08;3!CL:0000307;7.26e-08;3!CL:0002178;7.26e-08;3!CL:0002368;4.66e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002252,4.22e-21,1;CL:0000082,4.72e-10,19;CL:0002202,9.24e-10,9;CL:0002632,9.24e-10,9;CL:0002328,5.18e-08,3;CL:0002076,6.97e-08,42;CL:0002178,7.26e-08,3;CL:0000068,8.29e-08,3;CL:0000069,8.29e-08,3;CL:0000307,8.29e-08,3;CL:0000377,8.29e-08,3;CL:0002368,4.95e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000377;7.26e-08;3 | |||
|ontology_enrichment_disease=DOID:1749!1.88e-15!14;DOID:305!2.07e-11!106;DOID:0050687!2.04e-08!143;DOID:3493!5.34e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.40e-13;14!DOID:3493;2.02e-11;2!DOID:4556;5.73e-08;3!DOID:299;7.66e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.45e-13,14;DOID:3493,2.02e-11,2;DOID:4556,5.93e-08,3;DOID:299,7.66e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004815!7.33e-10!3;UBERON:0002031!7.33e-10!3;UBERON:0002185!1.78e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0005181;9.11e-14;35!UBERON:0005178;2.52e-13;34!UBERON:0002224;2.52e-13;34!UBERON:0004802;4.51e-10;19!UBERON:0000115;4.51e-10;19!UBERON:0000072;1.25e-09;37!UBERON:0002048;8.82e-09;22!UBERON:0004807;8.82e-09;22!UBERON:0000117;8.82e-09;22!UBERON:0000171;8.82e-09;22!UBERON:0000170;8.82e-09;22!UBERON:0004815;5.18e-08;3!UBERON:0002031;5.18e-08;3!UBERON:0001043;7.26e-08;3!UBERON:0000915;7.86e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005178,1.17e-14,34;UBERON:0002224,1.17e-14,34;UBERON:0005181,3.04e-14,35;UBERON:0004802,4.72e-10,19;UBERON:0000115,4.72e-10,19;UBERON:0000915,1.25e-09,52;UBERON:0002048,9.18e-09,22;UBERON:0000117,9.18e-09,22;UBERON:0000171,9.18e-09,22;UBERON:0000170,9.18e-09,22;UBERON:0005597,9.18e-09,22;UBERON:0000118,9.18e-09,22;UBERON:0008947,1.11e-08,38;UBERON:0003258,1.11e-08,38;UBERON:0001041,4.38e-08,87;UBERON:0004815,5.18e-08,3;UBERON:0002031,5.18e-08,3;UBERON:0001043,6.34e-08,3;UBERON:0009143,6.34e-08,3;UBERON:0000072,4.49e-07,47;UBERON:0004807,5.25e-07,28 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59710612239464,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.502644862058154,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0.307007349452259,0,0,0,0.0852266274161009,0.356128142586949,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,1.08890984861323,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.42132431836989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0.962059999958153,0,0.910347586283997,0,0.472775363535873,0,0,0,0,0,0,0.110579259931225,0.886642856860642,0,0,0.139423744278603,0,0,0,0,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.609414446062818,0,0,0,0,0,0,0,0,0,0,0,0.586654148204409,0,0,0,1.15272333723285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.962776056180637,0,0,0,0,0,0,0,0,0,3.07064315711112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0.422624246717254,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0.196295437002051,0,0,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.679697329768317,0,0,0,0,0.157115589916002,0.280272163313789,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.196300467230486,6.33973209907801,0,0,0,0,3.9769708788558,0,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,1.12337913364836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr16:2030183..2030227,- | |short_description=p@chr16:2030183..2030227,- | ||
}} | }} |
Latest revision as of 06:55, 25 July 2015
Short description: | p@chr16:2030183..2030227, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:2030183..2030227, - |
Coexpression cluster: | C2363_signet_adenocarcinoma_Urothelial_hepatoblastoma_colon_serous_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of esophagus | 4.22e-21 | 1 |
epithelial cell of lung | 4.72e-10 | 19 |
epithelial cell of tracheobronchial tree | 9.24e-10 | 9 |
epithelial cell of lower respiratory tract | 9.24e-10 | 9 |
bronchial epithelial cell | 5.18e-08 | 3 |
endo-epithelial cell | 6.97e-08 | 42 |
epithelial cell of stomach | 7.26e-08 | 3 |
duct epithelial cell | 8.29e-08 | 3 |
branched duct epithelial cell | 8.29e-08 | 3 |
tracheal epithelial cell | 8.29e-08 | 3 |
tracheoblast | 8.29e-08 | 3 |
respiratory epithelial cell | 4.95e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
thoracic cavity element | 1.17e-14 | 34 |
thoracic cavity | 1.17e-14 | 34 |
thoracic segment organ | 3.04e-14 | 35 |
respiratory tract epithelium | 4.72e-10 | 19 |
lung epithelium | 4.72e-10 | 19 |
thoracic segment of trunk | 1.25e-09 | 52 |
lung | 9.18e-09 | 22 |
respiratory tube | 9.18e-09 | 22 |
respiration organ | 9.18e-09 | 22 |
pair of lungs | 9.18e-09 | 22 |
lung primordium | 9.18e-09 | 22 |
lung bud | 9.18e-09 | 22 |
respiratory primordium | 1.11e-08 | 38 |
endoderm of foregut | 1.11e-08 | 38 |
foregut | 4.38e-08 | 87 |
lower respiratory tract epithelium | 5.18e-08 | 3 |
epithelium of bronchus | 5.18e-08 | 3 |
esophagus | 6.34e-08 | 3 |
esophageal region | 6.34e-08 | 3 |
segment of respiratory tract | 4.49e-07 | 47 |
respiratory system epithelium | 5.25e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.45e-13 | 14 |
signet ring cell adenocarcinoma | 2.02e-11 | 2 |
lung large cell carcinoma | 5.93e-08 | 3 |
adenocarcinoma | 7.66e-08 | 25 |