FFCP PHASE1:Hg19::chr11:47279504..47279563,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10062 | |EntrezGene=10062 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7966 | |HGNC=7966 | ||
|TSSclassifier=strong | |||
|UniProt=F8WC63,C9JBS2,C9JEC2,Q13133 | |UniProt=F8WC63,C9JBS2,C9JEC2,Q13133 | ||
|association_with_transcript=0bp_to_ENST00000405853,ENST00000420369,ENST00000436029,ENST00000437276,ENST00000441012,ENST00000467728,ENST00000476086,ENST00000525441,uc001nem.2_5end | |association_with_transcript=0bp_to_ENST00000405853,ENST00000420369,ENST00000436029,ENST00000437276,ENST00000441012,ENST00000467728,ENST00000476086,ENST00000525441,uc001nem.2_5end | ||
|cluster_id=chr11:47279504..47279563,+ | |||
|description=CAGE_peak_1_at_NR1H3_5end | |description=CAGE_peak_1_at_NR1H3_5end | ||
|id=chr11:47279504..47279563,+ | |id=chr11:47279504..47279563,+ | ||
|ontology_enrichment_celltype=CL:0000557!3.84e-10!71;CL:0002009!9.92e-10!65;CL:0002194!1.29e-09!63;CL:0000576!1.29e-09!63;CL:0000040!1.29e-09!63;CL:0000559!1.29e-09!63;CL:0000839!1.75e-09!70;CL:0000766!4.51e-08!76 | |ontology_enrichment_celltype=CL:0000557!3.84e-10!71;CL:0002009!9.92e-10!65;CL:0002194!1.29e-09!63;CL:0000576!1.29e-09!63;CL:0000040!1.29e-09!63;CL:0000559!1.29e-09!63;CL:0000839!1.75e-09!70;CL:0000766!4.51e-08!76 | ||
|ontology_enrichment_celltype_v019=CL:0000136;5.65e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,4.04e-09,67;CL:0002009,1.12e-08,61;CL:0000839,1.42e-08,66;CL:0002194,1.53e-08,59;CL:0000576,1.53e-08,59;CL:0000040,1.53e-08,59;CL:0000559,1.53e-08,59;CL:0000766,7.41e-07,72;CL:0000136,8.09e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.54e-12!115;UBERON:0000926!5.62e-12!448;UBERON:0004120!5.62e-12!448;UBERON:0006603!5.62e-12!448;UBERON:0000468!8.86e-11!659;UBERON:0000922!1.67e-10!612;UBERON:0000062!2.02e-10!511;UBERON:0002050!9.99e-10!605;UBERON:0005423!9.99e-10!605;UBERON:0002371!1.01e-09!80;UBERON:0000467!1.20e-09!625;UBERON:0000923!1.42e-09!604;UBERON:0005291!1.42e-09!604;UBERON:0006598!1.42e-09!604;UBERON:0002532!1.42e-09!604;UBERON:0000480!2.08e-09!626;UBERON:0002204!5.37e-09!167;UBERON:0007023!1.76e-08!115;UBERON:0001474!2.17e-08!86;UBERON:0002193!9.95e-08!112;UBERON:0002390!1.21e-07!102;UBERON:0003061!1.21e-07!102;UBERON:0004765!1.45e-07!101;UBERON:0001434!1.45e-07!101;UBERON:0000160!3.24e-07!27 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,4.47e-10,93;UBERON:0002204,2.84e-09,167;UBERON:0002371,3.99e-09,76;UBERON:0004765,3.99e-08,90;UBERON:0007023,4.77e-08,114;UBERON:0000926,5.16e-08,315;UBERON:0004120,5.16e-08,315;UBERON:0006603,5.16e-08,315;UBERON:0001434,7.63e-08,100;UBERON:0001474,9.80e-08,82;UBERON:0002193,2.11e-07,108;UBERON:0002390,4.39e-07,98;UBERON:0003061,4.39e-07,98;UBERON:0000922,5.21e-07,592;UBERON:0000923,8.16e-07,560;UBERON:0010316,8.16e-07,560;UBERON:0005291,8.16e-07,560;UBERON:0006598,8.16e-07,560;UBERON:0010317,8.16e-07,560;UBERON:0002532,8.16e-07,560 | |||
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| ||
|short_description=p1@NR1H3 | |short_description=p1@NR1H3 | ||
}} | }} |
Latest revision as of 04:15, 18 September 2015
Short description: | p1@NR1H3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NR1H3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000405853, ENST00000420369, ENST00000436029, ENST00000437276, ENST00000441012, ENST00000467728, ENST00000476086, ENST00000525441, uc001nem.2_5end |
EntrezGene: | NR1H3 |
HGNC: | 7966 |
UniProt: | F8WC63C9JBS2C9JEC2Q13133 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 4.04e-09 | 67 |
macrophage dendritic cell progenitor | 1.12e-08 | 61 |
myeloid lineage restricted progenitor cell | 1.42e-08 | 66 |
monopoietic cell | 1.53e-08 | 59 |
monocyte | 1.53e-08 | 59 |
monoblast | 1.53e-08 | 59 |
promonocyte | 1.53e-08 | 59 |
myeloid leukocyte | 7.41e-07 | 72 |
fat cell | 8.09e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
immune system | 4.47e-10 | 93 |
musculoskeletal system | 2.84e-09 | 167 |
bone marrow | 3.99e-09 | 76 |
skeletal element | 3.99e-08 | 90 |
adult organism | 4.77e-08 | 114 |
mesoderm | 5.16e-08 | 315 |
mesoderm-derived structure | 5.16e-08 | 315 |
presumptive mesoderm | 5.16e-08 | 315 |
skeletal system | 7.63e-08 | 100 |
bone element | 9.80e-08 | 82 |
hemolymphoid system | 2.11e-07 | 108 |
hematopoietic system | 4.39e-07 | 98 |
blood island | 4.39e-07 | 98 |
embryo | 5.21e-07 | 592 |
germ layer | 8.16e-07 | 560 |
germ layer / neural crest | 8.16e-07 | 560 |
embryonic tissue | 8.16e-07 | 560 |
presumptive structure | 8.16e-07 | 560 |
germ layer / neural crest derived structure | 8.16e-07 | 560 |
epiblast (generic) | 8.16e-07 | 560 |