FFCP PHASE1:Hg19::chr12:78430380..78430417,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89795 | |EntrezGene=89795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=15998 | |HGNC=15998 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-225bp_to_uc010sub.1_5end | |association_with_transcript=-225bp_to_uc010sub.1_5end | ||
|cluster_id=chr12:78430380..78430417,+ | |||
|coexpression_cluster_id=C1176 | |||
|description=CAGE_peak_10_at_NAV3_5end | |description=CAGE_peak_10_at_NAV3_5end | ||
|id=chr12:78430380..78430417,+ | |id=chr12:78430380..78430417,+ | ||
|ontology_enrichment_celltype=CL:0002615!3.84e-08!3;CL:0002579!9.98e-08!3;CL:0002541!5.00e-07!3 | |ontology_enrichment_celltype=CL:0002615!3.84e-08!3;CL:0002579!9.98e-08!3;CL:0002541!5.00e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002615;5.11e-15;3!CL:0000511;1.39e-11;1!CL:0002625;1.39e-11;1!CL:0000216;1.39e-11;1!CL:0000136;7.03e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,6.10e-15,3;CL:0000511,1.07e-11,1;CL:0002625,1.07e-11,1;CL:0000216,1.07e-11,1;CL:0000136,7.20e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.95e-32;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.75e-27!115;UBERON:0001049!9.04e-23!57;UBERON:0005068!9.04e-23!57;UBERON:0006241!9.04e-23!57;UBERON:0007135!9.04e-23!57;UBERON:0002616!5.49e-20!59;UBERON:0001017!6.45e-20!82;UBERON:0001893!6.86e-19!34;UBERON:0005743!1.41e-18!86;UBERON:0002791!1.32e-17!33;UBERON:0000955!4.60e-17!69;UBERON:0006238!4.60e-17!69;UBERON:0002020!5.42e-17!34;UBERON:0003528!5.42e-17!34;UBERON:0002780!1.39e-16!41;UBERON:0001890!1.39e-16!41;UBERON:0006240!1.39e-16!41;UBERON:0001869!2.79e-16!32;UBERON:0003075!3.22e-16!86;UBERON:0007284!3.22e-16!86;UBERON:0003080!4.62e-16!42;UBERON:0000073!5.59e-16!94;UBERON:0001016!5.59e-16!94;UBERON:0002619!2.52e-15!22;UBERON:0002346!4.03e-15!90;UBERON:0001950!1.52e-14!20;UBERON:0003688!3.41e-14!6;UBERON:0002358!3.41e-14!6;UBERON:0003684!3.41e-14!6;UBERON:0001178!3.41e-14!6;UBERON:0000956!3.89e-13!25;UBERON:0000203!3.89e-13!25;UBERON:0003056!1.86e-09!61;UBERON:0004457!1.20e-08!12;UBERON:0000042!1.20e-08!12;UBERON:0003076!5.47e-08!15;UBERON:0003057!5.47e-08!15;UBERON:0004733!5.74e-08!12;UBERON:0002028!5.74e-08!12;UBERON:0007277!5.74e-08!12;UBERON:0004732!2.88e-07!13;UBERON:0000033!3.19e-07!123;UBERON:0001872!3.96e-07!5;UBERON:0000476!5.00e-07!3;UBERON:0000920!5.00e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.58e-16;6!UBERON:0002358;1.58e-16;6!UBERON:0003684;1.58e-16;6!UBERON:0001178;1.58e-16;6!UBERON:0002037;2.53e-16;6!UBERON:0002134;8.64e-12;1!UBERON:0005208;8.64e-12;1!UBERON:0004145;8.64e-12;1!UBERON:0005946;8.64e-12;1!UBERON:0005965;8.64e-12;1!UBERON:0002078;8.64e-12;1!UBERON:0001136;1.39e-11;1!UBERON:0001343;1.39e-11;1!UBERON:0004910;1.39e-11;1!UBERON:0004813;1.39e-11;1!UBERON:0004457;3.26e-11;9!UBERON:0000042;3.26e-11;9!UBERON:0002680;4.45e-11;9!UBERON:0001895;4.45e-11;9!UBERON:0004733;1.94e-08;12!UBERON:0002028;1.94e-08;12!UBERON:0004732;7.91e-08;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.80e-16,6;UBERON:0002358,1.80e-16,6;UBERON:0003684,1.80e-16,6;UBERON:0001178,1.80e-16,6;UBERON:0002037,2.60e-16,6;UBERON:0006215,2.60e-16,6;UBERON:0002134,9.61e-12,1;UBERON:0005208,9.61e-12,1;UBERON:0005946,9.61e-12,1;UBERON:0005965,9.61e-12,1;UBERON:0002078,9.61e-12,1;UBERON:0001136,1.07e-11,1;UBERON:0001343,1.07e-11,1;UBERON:0004910,1.07e-11,1;UBERON:0005154,1.07e-11,1;UBERON:0005295,1.07e-11,1;UBERON:0004813,1.07e-11,1;UBERON:0005297,1.07e-11,1;UBERON:0005294,1.07e-11,1;UBERON:0010141,1.07e-11,1;UBERON:0005891,1.07e-11,1;UBERON:0002680,4.53e-11,9;UBERON:0001895,4.53e-11,9;UBERON:0010092,4.53e-11,9;UBERON:0004457,1.64e-08,12;UBERON:0000042,1.64e-08,12;UBERON:0004733,1.96e-08,12;UBERON:0002028,1.96e-08,12;UBERON:0007277,1.96e-08,12;UBERON:0004732,8.01e-08,13;UBERON:0003076,7.65e-07,15;UBERON:0003057,7.65e-07,15 | |||
|phase1_expression=3.08853244759946,0.428201047781966,6.48390258841467,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24053903909388,0,0,5.63812256725084,0.511707249066704,0.482561763430822,0,0,0,0.0821271560138091,0,0,0,0,0,0.229628896329213,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47298427954533,0,0,0,0,1.6068392984416,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,8.51116798049608,22.3997674982063,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,4.60415133204185,0.493217028184668,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,3.05163472634166,3.31737779793674,1.18219047581419,0.87754158861589,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15361907373044,0,0,0,0,0,0,0,0,0,0.885847333632739,0,0,0.681017030557878,0,0,0,0,0,0.789744236554321,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.747511887973863,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.500763722825999,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0.228840068396924,0.756154618816195,0.310874401165561,0,0,0,0.155262956876259,0.414706207840855,0,0,0.601030435988874,0.380805212168795,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.41023272848151,3.02486035466062,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.443910671357348,1.09394961803644,0,0,0,0,0,0,0,0,0.79832133146375,0,0,0.40781839786099,0.328863867814245,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.430018749454354,0,0.271965960763659,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0.413731983447581,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0.366724332548599,0,0.665756774185513,0,0 | |phase1_expression=3.08853244759946,0.428201047781966,6.48390258841467,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24053903909388,0,0,5.63812256725084,0.511707249066704,0.482561763430822,0,0,0,0.0821271560138091,0,0,0,0,0,0.229628896329213,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47298427954533,0,0,0,0,1.6068392984416,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,8.51116798049608,22.3997674982063,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,4.60415133204185,0.493217028184668,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,3.05163472634166,3.31737779793674,1.18219047581419,0.87754158861589,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15361907373044,0,0,0,0,0,0,0,0,0,0.885847333632739,0,0,0.681017030557878,0,0,0,0,0,0.789744236554321,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.747511887973863,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.500763722825999,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0.228840068396924,0.756154618816195,0.310874401165561,0,0,0,0.155262956876259,0.414706207840855,0,0,0.601030435988874,0.380805212168795,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.41023272848151,3.02486035466062,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.443910671357348,1.09394961803644,0,0,0,0,0,0,0,0,0.79832133146375,0,0,0.40781839786099,0.328863867814245,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.430018749454354,0,0.271965960763659,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0.413731983447581,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0.366724332548599,0,0.665756774185513,0,0 | ||
|short_description=p10@NAV3 | |short_description=p10@NAV3 | ||
}} | }} |
Latest revision as of 22:52, 24 September 2015
Short description: | p10@NAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_NAV3_5end |
Coexpression cluster: | C1176_acute_biphenotypic_Adipocyte_myelodysplastic_Preadipocyte_CD14_granulocyte |
Association with transcript: | -225bp_to_uc010sub.1_5end |
EntrezGene: | NAV3 |
HGNC: | 15998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 6.10e-15 | 3 |
androgen binding protein secreting cell | 1.07e-11 | 1 |
seminiferous tubule epithelial cell | 1.07e-11 | 1 |
Sertoli cell | 1.07e-11 | 1 |
fat cell | 7.20e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.80e-16 | 6 |
peritoneum | 1.80e-16 | 6 |
abdominal cavity | 1.80e-16 | 6 |
visceral peritoneum | 1.80e-16 | 6 |
cerebellum | 2.60e-16 | 6 |
rhombic lip | 2.60e-16 | 6 |
tricuspid valve | 9.61e-12 | 1 |
right atrium valve | 9.61e-12 | 1 |
outflow tract of atrium | 9.61e-12 | 1 |
outflow part of right atrium | 9.61e-12 | 1 |
right cardiac atrium | 9.61e-12 | 1 |
mesothelium | 1.07e-11 | 1 |
seminiferous tubule of testis | 1.07e-11 | 1 |
epithelium of male gonad | 1.07e-11 | 1 |
epithelial cord | 1.07e-11 | 1 |
sex cord | 1.07e-11 | 1 |
seminiferous tubule epithelium | 1.07e-11 | 1 |
testis sex cord | 1.07e-11 | 1 |
genital ridge | 1.07e-11 | 1 |
primitive sex cord of indifferent gonad | 1.07e-11 | 1 |
coelomic epithelium | 1.07e-11 | 1 |
regional part of metencephalon | 4.53e-11 | 9 |
metencephalon | 4.53e-11 | 9 |
future metencephalon | 4.53e-11 | 9 |
cavity lining | 1.64e-08 | 12 |
serous membrane | 1.64e-08 | 12 |
segmental subdivision of hindbrain | 1.96e-08 | 12 |
hindbrain | 1.96e-08 | 12 |
presumptive hindbrain | 1.96e-08 | 12 |
segmental subdivision of nervous system | 8.01e-08 | 13 |
posterior neural tube | 7.65e-07 | 15 |
chordal neural plate | 7.65e-07 | 15 |