FFCP PHASE1:Hg19::chr18:43537113..43537122,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:43537113..43537122,- | |||
|description=CAGE_peak_at_chr18:43537113..43537122,- | |description=CAGE_peak_at_chr18:43537113..43537122,- | ||
|id=chr18:43537113..43537122,- | |id=chr18:43537113..43537122,- | ||
|ontology_enrichment_celltype=CL:0000055!2.63e-25!180;CL:0000057!2.31e-18!75;CL:0002620!1.58e-13!23;CL:0000048!1.66e-13!430;CL:0000723!1.75e-13!436;CL:0000034!1.00e-12!444;CL:0000680!6.20e-10!57;CL:0000056!6.20e-10!57;CL:0000355!6.20e-10!57;CL:0000144!1.09e-08!625;CL:0000153!1.29e-08!9;CL:0000447!1.29e-08!9;CL:0000188!6.38e-08!9;CL:0000187!1.20e-07!54;CL:0000548!1.33e-07!679;CL:0000004!1.33e-07!679;CL:0000255!1.33e-07!679;CL:0000515!1.64e-07!4;CL:0000012!2.03e-07!682;CL:0002371!3.10e-07!591;CL:0000499!3.68e-07!27;CL:0000667!4.63e-07!6;CL:0000058!4.63e-07!6;CL:0000138!4.63e-07!6;CL:0000134!6.55e-07!358;CL:0002320!8.89e-07!365 | |ontology_enrichment_celltype=CL:0000055!2.63e-25!180;CL:0000057!2.31e-18!75;CL:0002620!1.58e-13!23;CL:0000048!1.66e-13!430;CL:0000723!1.75e-13!436;CL:0000034!1.00e-12!444;CL:0000680!6.20e-10!57;CL:0000056!6.20e-10!57;CL:0000355!6.20e-10!57;CL:0000144!1.09e-08!625;CL:0000153!1.29e-08!9;CL:0000447!1.29e-08!9;CL:0000188!6.38e-08!9;CL:0000187!1.20e-07!54;CL:0000548!1.33e-07!679;CL:0000004!1.33e-07!679;CL:0000255!1.33e-07!679;CL:0000515!1.64e-07!4;CL:0000012!2.03e-07!682;CL:0002371!3.10e-07!591;CL:0000499!3.68e-07!27;CL:0000667!4.63e-07!6;CL:0000058!4.63e-07!6;CL:0000138!4.63e-07!6;CL:0000134!6.55e-07!358;CL:0002320!8.89e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.70e-14;3!CL:0000388;1.70e-14;3!CL:0002615;2.08e-13;3!CL:0000153;1.56e-12;9!CL:0000447;1.56e-12;9!CL:0000056;2.65e-11;4!CL:0000499;3.36e-09;28!CL:0000138;1.54e-07;6!CL:0000327;2.16e-07;15!CL:0000515;2.25e-07;3!CL:0002579;7.70e-07;3!CL:0000214;7.70e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,1.02e-14,3;CL:0000388,1.02e-14,3;CL:0002615,2.38e-13,3;CL:0000153,1.70e-12,9;CL:0000447,1.70e-12,9;CL:0000515,2.49e-11,4;CL:0000499,3.07e-09,28;CL:0000057,2.33e-08,76;CL:0000058,1.84e-07,6;CL:0000138,1.84e-07,6;CL:0000327,2.27e-07,15;CL:0000214,6.76e-07,3;CL:0002579,8.55e-07,3;CL:0000136,9.32e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000515;2.65e-11;4 | |||
|ontology_enrichment_disease=DOID:17!4.32e-08!5;DOID:450!4.32e-08!5;DOID:66!4.32e-08!5;DOID:423!4.32e-08!5;DOID:0080000!4.32e-08!5;DOID:11722!4.32e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.93e-08;5!DOID:450;1.93e-08;5!DOID:66;1.93e-08;5!DOID:423;1.93e-08;5!DOID:0080000;1.93e-08;5!DOID:11722;1.93e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.53e-08,5;DOID:450,2.53e-08,5;DOID:66,2.53e-08,5;DOID:423,2.53e-08,5;DOID:0080000,2.53e-08,5;DOID:11722,2.53e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.80e-10!83;UBERON:0002329!2.80e-10!83;UBERON:0003077!2.80e-10!83;UBERON:0003059!2.80e-10!83;UBERON:0007282!2.80e-10!83;UBERON:0009618!2.80e-10!83;UBERON:0007285!2.80e-10!83;UBERON:0002097!5.38e-10!40;UBERON:0003688!6.50e-10!6;UBERON:0002358!6.50e-10!6;UBERON:0003684!6.50e-10!6;UBERON:0001178!6.50e-10!6;UBERON:0001134!7.99e-09!61;UBERON:0002036!7.99e-09!61;UBERON:0003082!7.99e-09!61;UBERON:0002385!2.51e-08!63;UBERON:0001015!2.51e-08!63;UBERON:0000383!2.51e-08!63;UBERON:0004290!2.85e-08!70;UBERON:0002199!2.88e-08!45;UBERON:0002416!2.88e-08!45;UBERON:0000486!3.03e-08!82;UBERON:0004457!6.96e-08!12;UBERON:0000042!6.96e-08!12;UBERON:0002384!1.09e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;7.43e-23;9!UBERON:0000042;7.43e-23;9!UBERON:0003688;6.62e-18;6!UBERON:0002358;6.62e-18;6!UBERON:0003684;6.62e-18;6!UBERON:0001178;6.62e-18;6!UBERON:0007846;1.70e-14;3!UBERON:0000043;1.70e-14;3!UBERON:0007845;1.70e-14;3!UBERON:0006915;7.70e-07;3!UBERON:0007616;7.70e-07;3!UBERON:0002217;7.70e-07;3!UBERON:0002018;7.70e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,8.42e-18,6;UBERON:0002358,8.42e-18,6;UBERON:0003684,8.42e-18,6;UBERON:0001178,8.42e-18,6;UBERON:0004457,6.87e-17,12;UBERON:0000042,6.87e-17,12;UBERON:0007846,1.02e-14,3;UBERON:0000043,1.02e-14,3;UBERON:0007845,1.02e-14,3;UBERON:0006915,6.76e-07,3;UBERON:0007616,6.76e-07,3;UBERON:0002217,6.76e-07,3;UBERON:0002018,6.76e-07,3 | |||
|phase1_expression=0.908391896352783,1.07050261945492,1.69145284915165,1.0007329835313,1.34088328328186,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69870898099936,2.00535164254356,2.02785126545153,0.795285947051099,0.973269740605272,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.25326102332916,5.16395805171553,0.286836620748814,0,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,2.37600571456411,0.247266929278557,0,0,0,0,1.10825646193673,0.877955241761676,1.22595118319608,0.300476117813194,0,0.89694817844431,0.427114777637135,2.11931901159562,1.20036438433761,1.23663035086127,0.257640540045629,0.18611685633159,0.843881661206331,0.487185025805993,1.51460264546469,0.552299391853796,0.484938170456436,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59562869950922,1.04007436911366,0,0,0,0,0,0,0.325736184293735,0,0,1.20575750823834,0.871533458600294,0.499864955910285,0,0,0,1.19812427745791,0,2.85273810081437,4.48822050669496,0.821905290201534,6.26713371339634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,1.07057393278297,0.946214490203608,4.91993942969395,0.902838299183157,2.27407504055985,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,1.98486246255021,0.61384789315225,0,1.28139149255701,2.04682899626681,0.965123526861645,0,0,0,0.164254312027618,0,0.348631135379878,0,0,0,0.574072240823034,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.096670718292122,0,0.15350367472613,0.137836572484531,0.107420244868274,0.290033387828457,0.255679882248303,0.623224249527161,0,0,0,0,0.464845549297286,1.25924938732256,1.3940745403212,0,0,0.869932992075073,0,0.143124886741991,0,0.632758849437452,0.762520775695299,0.255897791311334,0.855877976067841,0,0,0.179872457583315,0.274537029736055,0,0.202182481573316,0,0,0,0,0,0.136499911407986,0,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0,0,0,0,0.0982490410131212,0,0,2.9555068941673,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99402028452346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422401346077626,0,0,0,0,0,0.542999601753713,1.72844298240254,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0.701139929541673,0,2.27283606330107,3.27038272278348,0.889811221596536,0,0.907385542579434,0.15543720058278,0,0,0,0.310525913752519,0,0.265841714557995,0,0.150257608997218,1.90402606084398,0.406870733204662,0,0.107410557042488,1.39210127963548,0.796191777397232,0,1.03018711554838,0.673498977531838,0,0,0,0,0,0,0,0.358177682162975,0,0.219284049578707,0.176689145945881,0,0,0,0.345430341731199,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60342272946051,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.56846940844415,0,0,0,0,0,0,0,0,0,0,0,0,0,6.32391530883477,1.84870251452567,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182037633146,0,0,0,0,0,0,0,0 | |phase1_expression=0.908391896352783,1.07050261945492,1.69145284915165,1.0007329835313,1.34088328328186,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69870898099936,2.00535164254356,2.02785126545153,0.795285947051099,0.973269740605272,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.25326102332916,5.16395805171553,0.286836620748814,0,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,2.37600571456411,0.247266929278557,0,0,0,0,1.10825646193673,0.877955241761676,1.22595118319608,0.300476117813194,0,0.89694817844431,0.427114777637135,2.11931901159562,1.20036438433761,1.23663035086127,0.257640540045629,0.18611685633159,0.843881661206331,0.487185025805993,1.51460264546469,0.552299391853796,0.484938170456436,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59562869950922,1.04007436911366,0,0,0,0,0,0,0.325736184293735,0,0,1.20575750823834,0.871533458600294,0.499864955910285,0,0,0,1.19812427745791,0,2.85273810081437,4.48822050669496,0.821905290201534,6.26713371339634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,1.07057393278297,0.946214490203608,4.91993942969395,0.902838299183157,2.27407504055985,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,1.98486246255021,0.61384789315225,0,1.28139149255701,2.04682899626681,0.965123526861645,0,0,0,0.164254312027618,0,0.348631135379878,0,0,0,0.574072240823034,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.096670718292122,0,0.15350367472613,0.137836572484531,0.107420244868274,0.290033387828457,0.255679882248303,0.623224249527161,0,0,0,0,0.464845549297286,1.25924938732256,1.3940745403212,0,0,0.869932992075073,0,0.143124886741991,0,0.632758849437452,0.762520775695299,0.255897791311334,0.855877976067841,0,0,0.179872457583315,0.274537029736055,0,0.202182481573316,0,0,0,0,0,0.136499911407986,0,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0,0,0,0,0.0982490410131212,0,0,2.9555068941673,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99402028452346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422401346077626,0,0,0,0,0,0.542999601753713,1.72844298240254,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0.701139929541673,0,2.27283606330107,3.27038272278348,0.889811221596536,0,0.907385542579434,0.15543720058278,0,0,0,0.310525913752519,0,0.265841714557995,0,0.150257608997218,1.90402606084398,0.406870733204662,0,0.107410557042488,1.39210127963548,0.796191777397232,0,1.03018711554838,0.673498977531838,0,0,0,0,0,0,0,0.358177682162975,0,0.219284049578707,0.176689145945881,0,0,0,0.345430341731199,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60342272946051,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.56846940844415,0,0,0,0,0,0,0,0,0,0,0,0,0,6.32391530883477,1.84870251452567,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182037633146,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr18:43537113..43537122,- | |short_description=p@chr18:43537113..43537122,- | ||
}} | }} |
Latest revision as of 00:59, 26 July 2015
Short description: | p@chr18:43537113..43537122, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:43537113..43537122, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.02e-14 | 3 |
tendon cell | 1.02e-14 | 3 |
adipocyte of omentum tissue | 2.38e-13 | 3 |
GAG secreting cell | 1.70e-12 | 9 |
carbohydrate secreting cell | 1.70e-12 | 9 |
skeletal muscle myoblast | 2.49e-11 | 4 |
stromal cell | 3.07e-09 | 28 |
fibroblast | 2.33e-08 | 76 |
chondroblast | 1.84e-07 | 6 |
chondrocyte | 1.84e-07 | 6 |
extracellular matrix secreting cell | 2.27e-07 | 15 |
synovial cell | 6.76e-07 | 3 |
omentum preadipocyte | 8.55e-07 | 3 |
fat cell | 9.32e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 8.42e-18 | 6 |
peritoneum | 8.42e-18 | 6 |
abdominal cavity | 8.42e-18 | 6 |
visceral peritoneum | 8.42e-18 | 6 |
cavity lining | 6.87e-17 | 12 |
serous membrane | 6.87e-17 | 12 |
dense regular connective tissue | 1.02e-14 | 3 |
tendon | 1.02e-14 | 3 |
regular connective tissue | 1.02e-14 | 3 |
stratified squamous epithelium | 6.76e-07 | 3 |
layer of synovial tissue | 6.76e-07 | 3 |
synovial joint | 6.76e-07 | 3 |
synovial membrane of synovial joint | 6.76e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.53e-08 | 5 |
myotonic disease | 2.53e-08 | 5 |
muscle tissue disease | 2.53e-08 | 5 |
myopathy | 2.53e-08 | 5 |
muscular disease | 2.53e-08 | 5 |
myotonic dystrophy | 2.53e-08 | 5 |