FFCP PHASE1:Hg19::chr13:76210426..76210438,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4008 | |EntrezGene=4008 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |HGNC=6646 | ||
|TSSclassifier=strong | |||
|UniProt=E9PMP7 | |UniProt=E9PMP7 | ||
|association_with_transcript=-20bp_to_ENST00000377499,uc001vjt.1_5end | |association_with_transcript=-20bp_to_ENST00000377499,uc001vjt.1_5end | ||
|cluster_id=chr13:76210426..76210438,+ | |||
|description=CAGE_peak_5_at_LMO7_5end | |description=CAGE_peak_5_at_LMO7_5end | ||
|id=chr13:76210426..76210438,+ | |id=chr13:76210426..76210438,+ | ||
|ontology_enrichment_celltype=CL:0000055!7.62e-26!180;CL:0000057!1.74e-17!75;CL:0002620!2.67e-10!23;CL:0000144!2.03e-08!625;CL:0002371!1.93e-07!591;CL:0000048!3.11e-07!430;CL:0000680!4.90e-07!57;CL:0000056!4.90e-07!57;CL:0000355!4.90e-07!57 | |ontology_enrichment_celltype=CL:0000055!7.62e-26!180;CL:0000057!1.74e-17!75;CL:0002620!2.67e-10!23;CL:0000144!2.03e-08!625;CL:0002371!1.93e-07!591;CL:0000048!3.11e-07!430;CL:0000680!4.90e-07!57;CL:0000056!4.90e-07!57;CL:0000355!4.90e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002620;6.13e-13;23!CL:0000057;5.80e-08;73!CL:0002320;4.16e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.06e-20,76;CL:0002620,1.94e-13,23;CL:0000048,1.51e-11,427;CL:0000723,1.04e-10,433;CL:0000034,5.99e-10,441;CL:0002320,2.17e-07,361;CL:0000219,2.31e-07,386;CL:0000134,6.12e-07,354;CL:0000680,6.57e-07,58;CL:0000056,6.57e-07,58;CL:0000355,6.57e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.05e-08!83;UBERON:0002329!1.05e-08!83;UBERON:0003077!1.05e-08!83;UBERON:0003059!1.05e-08!83;UBERON:0007282!1.05e-08!83;UBERON:0009618!1.05e-08!83;UBERON:0007285!1.05e-08!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;7.81e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.35e-08,371;UBERON:0003102,5.07e-08,99;UBERON:0002097,5.09e-08,41;UBERON:0007524,1.04e-07,73;UBERON:0002329,1.18e-07,71;UBERON:0003059,1.18e-07,71;UBERON:0007282,1.18e-07,71;UBERON:0004290,1.18e-07,71;UBERON:0009618,1.18e-07,71;UBERON:0007503,1.52e-07,78;UBERON:0003077,2.23e-07,72;UBERON:0007285,2.23e-07,72;UBERON:0000486,3.37e-07,83;UBERON:0002199,7.21e-07,46;UBERON:0002416,7.21e-07,46 | |||
|phase1_expression=1.99846217197612,2.14100523890983,2.11431606143957,0,0.893922188854576,3.48935409640147,0,0,0,0.982935746006035,1.39560233594486,0,0.791300934685361,0.990130823680373,1.32558950291166,1.34465029290355,1.20538905604795,1.46062018077475,1.95173119516203,1.23121058076788,2.24400760368678,0.626909442956176,0.286235987131057,1.91624195102038,2.38531015230125,0.916960868975415,1.14940825229924,0.708397031823113,0,0.383829398097213,0.154816123316076,0,0,0.739508020333575,0,0,0.293600439334847,0,0.401088894940283,0.434021741431704,0,0,0,0.145398238779565,0,0.485168122375632,0,0,0,0,0.256160706529101,0.47296445977717,0.689491361473237,0,0,0.564727018627814,0.545812300115692,0,0,0,0.639337125799041,0,0.199463657621632,0.852449501065388,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.22465726229299,0,0.32145117339416,0.285012743741249,0,0,0,1.63841583378639,0.889509253863555,2.56038133539904,2.00197993518006,0.574752439954483,1.98313461835459,0.954053754535364,1.1384259382189,2.93618594685469,1.52909291250092,1.32171328579026,0.560508562981536,0.526768169550154,0.196709770113833,0.393010762749165,1.23360899399706,0.334372990781356,0.651844533267181,0.946895611469467,0,0.111410456885174,0.589211814949674,0.664601683750863,0.541607727530031,0.128091319725675,0.130059347559878,0.164437904603676,0.276350017785848,0,0.593146252648242,0.267540828089713,3.1360657141493,0.226618685395132,0,0.34362744548263,0,0.637130828648193,0,0,0,0.511946444617674,0,0.473554504088034,1.64225599384209,0.604820229674197,0.267440195783507,0.868946423296794,0,1.34140171940727,2.04580098949649,1.80719576192283,1.50401373190767,1.73815822752988,3.9764297352555,0.973269740605272,1.32348744029695,2.4390233720882,1.66886092816939,0.523916301990851,0.364295288292542,0,0,0.174129737299267,0.132957960518865,0,0,0,0.79504962946682,0.860234595106124,0.347140501607594,0,0.419499436209906,0.275118041940067,0.417989933073621,0.258416759169329,0.35576626268671,1.00416183829401,0.402829317109147,0,0,1.10298924103761,0.81014194788176,0.535798369704479,0.673588117878509,0.563057402416611,0,0,0.366403487860815,1.31780417436063,0,0,2.98183171017191,3.16576279161449,4.237093786023,4.58938593198102,3.19201543978521,0.560677600142307,1.06748995729705,0.49333509683432,2.8008993185979,0.67355336034844,1.14423332179421,0.605429710579726,1.15235184896,0.70296429550139,0,0.570471821544449,1.79338416662161,2.70099346880659,3.23745888736263,2.38766371393822,2.24569588380383,3.0708579327942,1.96318984233954,1.18800285728205,2.96720315134268,0.910161361938026,0,1.68336113954066,3.1279629967991,3.04770527032601,3.5118209670467,1.83892677479412,2.40380894250555,2.1552114800404,7.35497506324334,3.63047560991565,2.96704661623387,5.40163972951924,2.98852334791473,2.83404594050192,1.30281799432113,7.42615861861571,2.82567314967476,6.31084435610286,3.03764665519588,3.55621325001386,6.03516307278244,3.12331504505685,2.20428770003634,0.386521706326594,1.36373060295417,0.286804595389004,0.487894824518382,0.265059536642971,0,0.10366105501537,0.252320850875628,0.36497735907583,0,1.92972281457866,5.52539685409922,3.25057549622385,2.88751792667834,0.473227200159376,0.505754070234305,0.723033089650446,0.661763836394364,1.08939722046203,0.474541238222193,0.539325232640658,0.588664395376038,0.38474715694639,0.738155454624648,0,0.4115740113314,0,0,0,0,0.441463099414651,0,1.3725424823882,0,0,0,0.740707561268237,0.651616610620649,0,2.88662684050547,0.463721619900307,3.28744343860301,0.577465791044295,0,0.761016608938393,0,0.858486162094873,0,0,0,0,1.51183915378974,1.13420077793909,0.268675568108545,1.16253575405585,0.766765358330422,0.492663237895943,0.792435906119034,0.829312462163088,0.720599767084807,0,0.888970520090367,1.14596527667483,0,1.71072446022705,0.719792448923265,0.600686115687835,0.285826432630578,2.69114602428866,0.87192013766656,2.27348686044945,3.61960804121778,0,0.845302752556,3.19125739901845,1.04007436911366,0.771622122786426,1.41849132023278,0.266422179016099,2.28764789853036,1.08524321078289,0.823240336780769,0.65147236858747,1.06617584622764,0.791951872933429,0.301439377059586,2.61460037580088,1.09970290300263,0,0,0,2.15662369942424,4.59447743336456,2.85273810081437,1.88215698667853,1.2328579353023,2.50685348535854,0.336255431980582,0.591092280605782,0.862510299438069,0.385029108839245,0,0,0,0,0.637938751653163,0,0,0,1.59498939234882,2.50085260529839,2.71265023699736,3.53550464602372,1.96271887676878,3.78485796081443,4.56851518471581,2.10662269809403,0,3.10419213877515,1.99267679560631,2.21243002250044,2.60650843404249,0.783204629850962,0,0.206768026122887,0,0.426910231213777,0,1.66435439510497,0.604780586659361,2.97729369382532,10.8958001034524,1.96462066103151,2.56278298511402,6.65219423786715,2.2519548960105,1.48418066444991,2.00472601943452,0.532685175939381,1.72467027628999,1.55776328755086,0.929683027679674,0,1.00253235151642,0.0920809889358963,1.49258782613989,1.63882051206045,2.62248829918848,1.35359883872224,1.15523005656622,1.5686995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| ||
|short_description=p5@LMO7 | |short_description=p5@LMO7 | ||
}} | }} |
Latest revision as of 23:58, 17 September 2015
Short description: | p5@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LMO7_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000377499, uc001vjt.1_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PMP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.06e-20 | 76 |
skin fibroblast | 1.94e-13 | 23 |
multi fate stem cell | 1.51e-11 | 427 |
somatic stem cell | 1.04e-10 | 433 |
stem cell | 5.99e-10 | 441 |
connective tissue cell | 2.17e-07 | 361 |
motile cell | 2.31e-07 | 386 |
mesenchymal cell | 6.12e-07 | 354 |
muscle precursor cell | 6.57e-07 | 58 |
myoblast | 6.57e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.57e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.35e-08 | 371 |
surface structure | 5.07e-08 | 99 |
skin of body | 5.09e-08 | 41 |
dense mesenchyme tissue | 1.04e-07 | 73 |
somite | 1.18e-07 | 71 |
presomitic mesoderm | 1.18e-07 | 71 |
presumptive segmental plate | 1.18e-07 | 71 |
dermomyotome | 1.18e-07 | 71 |
trunk paraxial mesoderm | 1.18e-07 | 71 |
epithelial vesicle | 1.52e-07 | 78 |
paraxial mesoderm | 2.23e-07 | 72 |
presumptive paraxial mesoderm | 2.23e-07 | 72 |
multilaminar epithelium | 3.37e-07 | 83 |
integument | 7.21e-07 | 46 |
integumental system | 7.21e-07 | 46 |