FFCP PHASE1:Hg19::chr1:156119466..156119480,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64218 | |EntrezGene=64218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10729 | |HGNC=10729 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TCJ7 | |UniProt=Q5TCJ7 | ||
|association_with_transcript=-33bp_to_ENST00000414683_5end | |association_with_transcript=-33bp_to_ENST00000414683_5end | ||
|cluster_id=chr1:156119466..156119480,+ | |||
|coexpression_cluster_id=C146 | |||
|description=CAGE_peak_9_at_SEMA4A_5end | |description=CAGE_peak_9_at_SEMA4A_5end | ||
|id=chr1:156119466..156119480,+ | |id=chr1:156119466..156119480,+ | ||
|ontology_enrichment_celltype=CL:0000945!6.02e-57!24;CL:0000826!6.02e-57!24;CL:0000236!1.94e-32!14;CL:0000542!4.38e-25!53;CL:0000051!4.38e-25!53;CL:0000838!4.14e-23!52;CL:0002087!1.74e-19!119;CL:0000738!1.23e-16!140;CL:0002322!2.66e-15!5;CL:0002031!3.05e-13!124;CL:0000037!5.09e-12!172;CL:0000566!5.09e-12!172;CL:0000988!6.41e-11!182;CL:0002032!4.62e-10!165;CL:0000837!4.62e-10!165;CL:0000842!1.29e-09!3;CL:0000785!1.33e-07!2;CL:0000955!1.33e-07!2;CL:0000818!1.33e-07!2;CL:0000954!1.33e-07!2;CL:0000816!1.33e-07!2;CL:0000224!2.58e-07!4 | |ontology_enrichment_celltype=CL:0000945!6.02e-57!24;CL:0000826!6.02e-57!24;CL:0000236!1.94e-32!14;CL:0000542!4.38e-25!53;CL:0000051!4.38e-25!53;CL:0000838!4.14e-23!52;CL:0002087!1.74e-19!119;CL:0000738!1.23e-16!140;CL:0002322!2.66e-15!5;CL:0002031!3.05e-13!124;CL:0000037!5.09e-12!172;CL:0000566!5.09e-12!172;CL:0000988!6.41e-11!182;CL:0002032!4.62e-10!165;CL:0000837!4.62e-10!165;CL:0000842!1.29e-09!3;CL:0000785!1.33e-07!2;CL:0000955!1.33e-07!2;CL:0000818!1.33e-07!2;CL:0000954!1.33e-07!2;CL:0000816!1.33e-07!2;CL:0000224!2.58e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000945;7.93e-75;24!CL:0000236;3.70e-45;13!CL:0000542;9.76e-24;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.84e-75,24;CL:0000826,5.84e-75,24;CL:0000236,4.46e-42,14;CL:0000542,6.72e-38,53;CL:0000051,6.72e-38,53;CL:0000838,1.70e-33,52;CL:0002087,4.74e-16,115;CL:0000738,3.27e-15,136;CL:0002031,3.86e-13,120;CL:0002032,1.81e-12,161;CL:0000837,1.81e-12,161;CL:0000037,7.62e-12,168;CL:0000988,4.09e-11,177 | |||
|ontology_enrichment_development_v019=CL:0000051;9.76e-24;53!UBERON:0001045;3.40e-11;1!UBERON:0006298;1.15e-10;1 | |||
|ontology_enrichment_disease=DOID:0060058!2.37e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.92e-15;10!DOID:630;3.40e-11;1!DOID:0050177;3.40e-11;1!DOID:0050427;3.40e-11;1!DOID:12603;4.57e-11;1!DOID:4960;1.15e-10;1!DOID:0070004;1.15e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.15e-15,10;DOID:630,3.08e-11,1;DOID:0050177,3.08e-11,1;DOID:0050427,3.08e-11,1;DOID:12603,4.58e-11,1;DOID:4960,1.77e-10,1;DOID:0070004,1.77e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002106!3.20e-10!3;UBERON:0004854!3.20e-10!3;UBERON:0009034!3.20e-10!3;UBERON:0002095!3.20e-10!3;UBERON:0004782!3.20e-10!3;UBERON:0003281!3.20e-10!3;UBERON:0009664!3.20e-10!3;UBERON:0002296!3.20e-10!3;UBERON:0005602!3.20e-10!3;UBERON:0001179!3.20e-10!3;UBERON:0006293!3.20e-10!3;UBERON:0004177!3.18e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;3.40e-11;1!UBERON:0001153;3.40e-11;1!UBERON:0009854;3.40e-11;1!UBERON:0002372;4.57e-11;1!UBERON:0001961;4.57e-11;1!UBERON:0001744;4.57e-11;1!UBERON:0001042;4.57e-11;1!UBERON:0001735;4.57e-11;1!UBERON:0001736;1.15e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,3.76e-11,1;UBERON:0001153,3.76e-11,1;UBERON:0001045,3.76e-11,1;UBERON:0002372,4.15e-11,1;UBERON:0001961,4.15e-11,1;UBERON:0001744,4.15e-11,1;UBERON:0001735,4.15e-11,1;UBERON:0001736,1.21e-10,1;UBERON:0006298,1.21e-10,1 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.57470412614962,0.393553906568396,0,0,0,0,0,0,2.63388481973026,1.42169232487422,0,0.553995408531877,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,1.75996244461323,1.63841583378639,0.889509253863555,3.41384178053206,2.00197993518006,1.72425731986345,2.64417949113945,1.90810750907073,0.569212969109448,1.17447437874188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0.348581828608555,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0,0,0,0,0,0,0,3.71606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14425873296722,0,0,5.16956182936492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0.067401132980677,0,0,0.91227394607833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,22.3301144044677,4.74991133685494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03328987796489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.845855261818682,0.193373663920732,1.09935271517422,0,0,0,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,3.83906702183149,0.286888821570705,0,0,0,0,0,0,0,0,0,0.402547587182052,4.80852738454849 | ||
|short_description=p9@SEMA4A | |short_description=p9@SEMA4A | ||
}} | }} |
Latest revision as of 15:10, 17 September 2015
Short description: | p9@SEMA4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SEMA4A_5end |
Coexpression cluster: | C146_lymphangiectasia_lymphoma_gall_lymph_tonsil_gastric_transitionalcell |
Association with transcript: | -33bp_to_ENST00000414683_5end |
EntrezGene: | SEMA4A |
HGNC: | 10729 |
UniProt: | Q5TCJ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.84e-75 | 24 |
pro-B cell | 5.84e-75 | 24 |
B cell | 4.46e-42 | 14 |
lymphocyte | 6.72e-38 | 53 |
common lymphoid progenitor | 6.72e-38 | 53 |
lymphoid lineage restricted progenitor cell | 1.70e-33 | 52 |
nongranular leukocyte | 4.74e-16 | 115 |
leukocyte | 3.27e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 3.86e-13 | 120 |
hematopoietic oligopotent progenitor cell | 1.81e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.81e-12 | 161 |
hematopoietic stem cell | 7.62e-12 | 168 |
hematopoietic cell | 4.09e-11 | 177 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 3.76e-11 | 1 |
caecum | 3.76e-11 | 1 |
midgut | 3.76e-11 | 1 |
tonsil | 4.15e-11 | 1 |
mucosa-associated lymphoid tissue | 4.15e-11 | 1 |
lymphoid tissue | 4.15e-11 | 1 |
tonsillar ring | 4.15e-11 | 1 |
submandibular gland | 1.21e-10 | 1 |
submandibular gland primordium | 1.21e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.15e-15 | 10 |
genetic disease | 3.08e-11 | 1 |
monogenic disease | 3.08e-11 | 1 |
xeroderma pigmentosum | 3.08e-11 | 1 |
acute leukemia | 4.58e-11 | 1 |
bone marrow cancer | 1.77e-10 | 1 |
myeloma | 1.77e-10 | 1 |