FFCP PHASE1:Hg19::chr11:46403194..46403242,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:46403194..46403242,+
|short_description=p1@MDK
|description=CAGE_peak_1_at_MDK_5end
|association_with_transcript=0bp_to_ENST00000395566,ENST00000395569,EN...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4192 | |EntrezGene=4192 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6972 | |HGNC=6972 | ||
|UniProt=P21741, | |TSSclassifier=strong | ||
|UniProt=P21741,Q2LEK4,E7ES97 | |||
|association_with_transcript=0bp_to_ENST00000395566,ENST00000395569,ENST00000405098,ENST00000533283,NM_002391,uc001ncp.2,uc009yla.2,uc009ylb.2_5end | |||
|cluster_id=chr11:46403194..46403242,+ | |||
|description=CAGE_peak_1_at_MDK_5end | |||
|id=chr11:46403194..46403242,+ | |||
|ontology_enrichment_celltype=CL:0002321!3.06e-21!248;CL:0000220!2.10e-20!246;CL:0000066!5.58e-17!254;CL:0000222!1.95e-15!119;CL:0000055!5.97e-13!180;CL:0000393!2.05e-10!60;CL:0000211!2.05e-10!60;CL:0000183!3.50e-10!59;CL:0000187!1.18e-08!54;CL:0000680!3.37e-08!57;CL:0000056!3.37e-08!57;CL:0000355!3.37e-08!57;CL:0000115!4.04e-08!35;CL:0002078!4.91e-08!44;CL:0000213!8.77e-08!57;CL:0000215!8.77e-08!57;CL:0002139!3.18e-07!24;CL:1000497!7.99e-07!18;CL:0002518!7.99e-07!18;CL:1000449!9.23e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.88e-07;24!CL:0000115;8.75e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.44e-21,250;CL:0000066,2.33e-16,253;CL:0000222,7.50e-16,121;CL:0000393,8.42e-11,61;CL:0000211,8.42e-11,61;CL:0000187,5.09e-09,55;CL:0000680,1.50e-08,58;CL:0000056,1.50e-08,58;CL:0000355,1.50e-08,58;CL:0000115,4.03e-08,36;CL:0002078,4.36e-08,45;CL:0000213,8.22e-08,58;CL:0000215,8.22e-08,58;CL:0002139,2.96e-07,24;CL:0000133,9.58e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.94e-09!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.44e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0000490!2.75e-16!138;UBERON:0000119!3.56e-16!312;UBERON:0000483!4.17e-16!309;UBERON:0005256!7.26e-15!143;UBERON:0003914!1.67e-13!118;UBERON:0000481!6.61e-13!347;UBERON:0002049!1.60e-10!79;UBERON:0007798!1.60e-10!79;UBERON:0002100!2.53e-10!216;UBERON:0003104!6.99e-10!238;UBERON:0009142!6.99e-10!238;UBERON:0004111!2.42e-09!241;UBERON:0000475!2.58e-09!365;UBERON:0000477!2.94e-09!286;UBERON:0000468!7.92e-09!659;UBERON:0000055!6.95e-08!69;UBERON:0002385!8.05e-08!63;UBERON:0001015!8.05e-08!63;UBERON:0000383!8.05e-08!63;UBERON:0001134!9.19e-08!61;UBERON:0002036!9.19e-08!61;UBERON:0003082!9.19e-08!61;UBERON:0000922!1.05e-07!612;UBERON:0006554!1.75e-07!44;UBERON:0004872!2.52e-07!84;UBERON:0001008!3.46e-07!45;UBERON:0007625!3.67e-07!11;UBERON:0000486!5.04e-07!82;UBERON:0000025!6.44e-07!194;UBERON:0003064!8.07e-07!37;UBERON:0006555!8.60e-07!17;UBERON:0005103!8.60e-07!17;UBERON:0000083!8.60e-07!17;UBERON:0009201!8.60e-07!17;UBERON:0004819!8.60e-07!17;UBERON:0006553!8.60e-07!17;UBERON:0003074!8.60e-07!17;UBERON:0003060!8.60e-07!17;UBERON:0001456!8.62e-07!21;UBERON:0004211!9.23e-07!16;UBERON:0001285!9.23e-07!16;UBERON:0007684!9.23e-07!16;UBERON:0003220!9.23e-07!16;UBERON:0004208!9.23e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;3.46e-07;11!UBERON:0001456;7.52e-07;21!UBERON:0000970;9.36e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,8.17e-17,160;UBERON:0009142,8.17e-17,160;UBERON:0000119,1.28e-16,309;UBERON:0000483,1.49e-16,306;UBERON:0000490,3.68e-15,148;UBERON:0003914,2.70e-13,117;UBERON:0005256,1.31e-12,122;UBERON:0002049,1.85e-10,78;UBERON:0007798,1.85e-10,78;UBERON:0002100,5.80e-10,199;UBERON:0004111,3.73e-09,240;UBERON:0007503,1.22e-08,78;UBERON:0002385,3.72e-08,64;UBERON:0001015,3.72e-08,64;UBERON:0000383,3.72e-08,64;UBERON:0001134,4.23e-08,62;UBERON:0002036,4.23e-08,62;UBERON:0003082,4.23e-08,62;UBERON:0006554,6.99e-08,47;UBERON:0000055,8.23e-08,68;UBERON:0001008,1.39e-07,48;UBERON:0000486,2.54e-07,83;UBERON:0004872,2.87e-07,83;UBERON:0007625,3.42e-07,11;UBERON:0007524,8.09e-07,73 | |||
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| ||
|short_description=p1@MDK | |||
}} | }} |
Latest revision as of 02:55, 18 September 2015
Short description: | p1@MDK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MDK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395566, ENST00000395569, ENST00000405098, ENST00000533283, NM_002391, uc001ncp.2, uc009yla.2, uc009ylb.2_5end |
EntrezGene: | MDK |
HGNC: | 6972 |
UniProt: | P21741Q2LEK4E7ES97 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.44e-21 | 250 |
epithelial cell | 2.33e-16 | 253 |
mesodermal cell | 7.50e-16 | 121 |
electrically responsive cell | 8.42e-11 | 61 |
electrically active cell | 8.42e-11 | 61 |
muscle cell | 5.09e-09 | 55 |
muscle precursor cell | 1.50e-08 | 58 |
myoblast | 1.50e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.50e-08 | 58 |
endothelial cell | 4.03e-08 | 36 |
meso-epithelial cell | 4.36e-08 | 45 |
lining cell | 8.22e-08 | 58 |
barrier cell | 8.22e-08 | 58 |
endothelial cell of vascular tree | 2.96e-07 | 24 |
neurectodermal cell | 9.58e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 8.17e-17 | 160 |
entire embryonic mesenchyme | 8.17e-17 | 160 |
cell layer | 1.28e-16 | 309 |
epithelium | 1.49e-16 | 306 |
unilaminar epithelium | 3.68e-15 | 148 |
epithelial tube | 2.70e-13 | 117 |
trunk mesenchyme | 1.31e-12 | 122 |
vasculature | 1.85e-10 | 78 |
vascular system | 1.85e-10 | 78 |
trunk | 5.80e-10 | 199 |
anatomical conduit | 3.73e-09 | 240 |
epithelial vesicle | 1.22e-08 | 78 |
muscle tissue | 3.72e-08 | 64 |
musculature | 3.72e-08 | 64 |
musculature of body | 3.72e-08 | 64 |
skeletal muscle tissue | 4.23e-08 | 62 |
striated muscle tissue | 4.23e-08 | 62 |
myotome | 4.23e-08 | 62 |
urinary system structure | 6.99e-08 | 47 |
vessel | 8.23e-08 | 68 |
renal system | 1.39e-07 | 48 |
multilaminar epithelium | 2.54e-07 | 83 |
splanchnic layer of lateral plate mesoderm | 2.87e-07 | 83 |
pigment epithelium of eye | 3.42e-07 | 11 |
dense mesenchyme tissue | 8.09e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.44e-09 | 143 |