FFCP PHASE1:Hg19::chr1:197889533..197889548,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:197889533..197889548,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_at_chr1:197889533..197889548,+ | |description=CAGE_peak_at_chr1:197889533..197889548,+ | ||
|id=chr1:197889533..197889548,+ | |id=chr1:197889533..197889548,+ | ||
|ontology_enrichment_celltype=CL:0002620!1.41e-25!23;CL:0000511!3.16e-18!1;CL:0002625!3.16e-18!1;CL:0000216!3.16e-18!1;CL:0000057!2.24e-10!75 | |ontology_enrichment_celltype=CL:0002620!1.41e-25!23;CL:0000511!3.16e-18!1;CL:0002625!3.16e-18!1;CL:0000216!3.16e-18!1;CL:0000057!2.24e-10!75 | ||
|ontology_enrichment_celltype_v019=CL:0000511;3.34e-66;1!CL:0002625;3.34e-66;1!CL:0000216;3.34e-66;1!CL:0000138;2.19e-12;6!CL:0000154;2.59e-12;6!CL:0000153;1.04e-08;9!CL:0000447;1.04e-08;9!CL:0000151;1.23e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,2.39e-66,1;CL:0002625,2.39e-66,1;CL:0000216,2.39e-66,1;CL:0000058,2.19e-12,6;CL:0000138,2.19e-12,6;CL:0000154,2.45e-12,6;CL:0000153,1.04e-08,9;CL:0000447,1.04e-08,9;CL:0000151,1.78e-08,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!4.05e-53!5;DOID:450!4.05e-53!5;DOID:66!4.05e-53!5;DOID:423!4.05e-53!5;DOID:0080000!4.05e-53!5;DOID:11722!4.05e-53!5;DOID:3371!2.66e-18!1;DOID:4549!2.66e-18!1;DOID:5861!2.66e-18!1;DOID:6496!2.66e-18!1;DOID:7!1.00e-10!39 | |||
|ontology_enrichment_disease_v019=DOID:3371;1.23e-66;1!DOID:4549;1.23e-66;1!DOID:5861;1.23e-66;1!DOID:6496;1.23e-66;1!DOID:17;1.71e-14;5!DOID:450;1.71e-14;5!DOID:66;1.71e-14;5!DOID:423;1.71e-14;5!DOID:0080000;1.71e-14;5!DOID:11722;1.71e-14;5!DOID:201;2.19e-12;6!DOID:0060100;2.19e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.23e-66,1;DOID:4549,1.23e-66,1;DOID:5861,1.23e-66,1;DOID:6496,1.23e-66,1;DOID:17,1.83e-14,5;DOID:450,1.83e-14,5;DOID:66,1.83e-14,5;DOID:423,1.83e-14,5;DOID:0080000,1.83e-14,5;DOID:11722,1.83e-14,5;DOID:201,2.19e-12,6;DOID:0060100,2.19e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0001136!3.16e-18!1;UBERON:0001343!3.16e-18!1;UBERON:0004910!3.16e-18!1;UBERON:0005154!3.16e-18!1;UBERON:0005295!3.16e-18!1;UBERON:0004813!3.16e-18!1;UBERON:0005297!3.16e-18!1;UBERON:0005294!3.16e-18!1;UBERON:0010141!3.16e-18!1;UBERON:0005891!3.16e-18!1;UBERON:0002097!1.14e-14!40;UBERON:0002199!5.06e-13!45;UBERON:0002416!5.06e-13!45;UBERON:0004909!8.69e-10!2;UBERON:0002418!5.80e-07!3;UBERON:0004755!5.80e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;3.34e-66;1!UBERON:0001343;3.34e-66;1!UBERON:0004910;3.34e-66;1!UBERON:0004813;3.34e-66;1!UBERON:0004909;5.96e-34;2!UBERON:0002418;2.62e-23;3!UBERON:0004755;2.62e-23;3!UBERON:0005904;9.45e-18;4!UBERON:0000473;1.41e-09;8!UBERON:0000058;6.34e-08;10!UBERON:0003135;2.55e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,2.39e-66,1;UBERON:0001343,2.39e-66,1;UBERON:0004910,2.39e-66,1;UBERON:0005154,2.39e-66,1;UBERON:0005295,2.39e-66,1;UBERON:0004813,2.39e-66,1;UBERON:0005297,2.39e-66,1;UBERON:0005294,2.39e-66,1;UBERON:0010141,2.39e-66,1;UBERON:0005891,2.39e-66,1;UBERON:0004909,5.04e-34,2;UBERON:0002418,2.62e-23,3;UBERON:0004755,2.62e-23,3;UBERON:0005904,8.69e-18,4;UBERON:0000473,1.35e-09,8;UBERON:0004871,1.35e-09,8;UBERON:0003135,2.47e-07,11;UBERON:0004876,2.47e-07,11 | |||
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|short_description=p@chr1:197889533..197889548,+ | |short_description=p@chr1:197889533..197889548,+ | ||
}} | }} |
Latest revision as of 01:52, 28 July 2015
Short description: | p@chr1:197889533..197889548, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:197889533..197889548, + |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 2.39e-66 | 1 |
seminiferous tubule epithelial cell | 2.39e-66 | 1 |
Sertoli cell | 2.39e-66 | 1 |
chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
protein secreting cell | 2.45e-12 | 6 |
GAG secreting cell | 1.04e-08 | 9 |
carbohydrate secreting cell | 1.04e-08 | 9 |
secretory cell | 1.78e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 2.39e-66 | 1 |
seminiferous tubule of testis | 2.39e-66 | 1 |
epithelium of male gonad | 2.39e-66 | 1 |
epithelial cord | 2.39e-66 | 1 |
sex cord | 2.39e-66 | 1 |
seminiferous tubule epithelium | 2.39e-66 | 1 |
testis sex cord | 2.39e-66 | 1 |
genital ridge | 2.39e-66 | 1 |
primitive sex cord of indifferent gonad | 2.39e-66 | 1 |
coelomic epithelium | 2.39e-66 | 1 |
epithelium of gonad | 5.04e-34 | 2 |
cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
duct of male reproductive system | 8.69e-18 | 4 |
testis | 1.35e-09 | 8 |
somatic layer of lateral plate mesoderm | 1.35e-09 | 8 |
male reproductive organ | 2.47e-07 | 11 |
urogenital ridge | 2.47e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
musculoskeletal system disease | 1.83e-14 | 5 |
myotonic disease | 1.83e-14 | 5 |
muscle tissue disease | 1.83e-14 | 5 |
myopathy | 1.83e-14 | 5 |
muscular disease | 1.83e-14 | 5 |
myotonic dystrophy | 1.83e-14 | 5 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |