FFCP PHASE1:Hg19::chr1:235814345..235814362,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2786 | |EntrezGene=2786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4407 | |HGNC=4407 | ||
|TSSclassifier=strong | |||
|UniProt=P50150,B1APZ0 | |UniProt=P50150,B1APZ0 | ||
|association_with_transcript=-291bp_to_ENST00000366598,ENST00000450593,NM_001098721,NM_004485,uc001hxh.3,uc009xfz.2_5end | |association_with_transcript=-291bp_to_ENST00000366598,ENST00000450593,NM_001098721,NM_004485,uc001hxh.3,uc009xfz.2_5end | ||
|cluster_id=chr1:235814345..235814362,- | |||
|coexpression_cluster_id=C1453 | |||
|description=CAGE_peak_9_at_GNG4_5end | |description=CAGE_peak_9_at_GNG4_5end | ||
|id=chr1:235814345..235814362,- | |id=chr1:235814345..235814362,- | ||
|ontology_enrichment_celltype=CL:0000540!2.56e-09!6;CL:0000031!2.56e-09!6;CL:0000404!2.56e-09!6;CL:0000181!1.59e-07!12;CL:0000417!1.59e-07!12;CL:0000668!1.59e-07!12;CL:0000414!1.59e-07!12;CL:0000412!1.59e-07!12;CL:0000182!1.59e-07!12;CL:0000047!5.38e-07!8 | |ontology_enrichment_celltype=CL:0000540!2.56e-09!6;CL:0000031!2.56e-09!6;CL:0000404!2.56e-09!6;CL:0000181!1.59e-07!12;CL:0000417!1.59e-07!12;CL:0000668!1.59e-07!12;CL:0000414!1.59e-07!12;CL:0000412!1.59e-07!12;CL:0000182!1.59e-07!12;CL:0000047!5.38e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.34e-24;12!CL:0002535;1.43e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.34e-24,12;CL:0002535,1.43e-10,2;CL:0000223,6.60e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.58e-41;11!UBERON:0009497;6.88e-35;13!UBERON:0001041;3.07e-15;30!UBERON:0003104;1.02e-14;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:7;2.17e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,8.21e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0001017!3.03e-11!82;UBERON:0007023!6.71e-11!115;UBERON:0005743!1.61e-10!86;UBERON:0003076!1.98e-10!15;UBERON:0003057!1.98e-10!15;UBERON:0004733!6.76e-10!12;UBERON:0002028!6.76e-10!12;UBERON:0007277!6.76e-10!12;UBERON:0000073!4.08e-09!94;UBERON:0001016!4.08e-09!94;UBERON:0004732!4.41e-09!13;UBERON:0001049!1.94e-08!57;UBERON:0005068!1.94e-08!57;UBERON:0006241!1.94e-08!57;UBERON:0007135!1.94e-08!57;UBERON:0002298!4.42e-07!8;UBERON:0002616!7.60e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;5.89e-24;19!UBERON:0006925;5.89e-24;19!UBERON:0002423;2.96e-18;25!UBERON:0002108;2.42e-15;4!UBERON:0002365;1.11e-13;31!UBERON:0002330;1.11e-13;31!UBERON:0002368;3.69e-13;33!UBERON:0006955;1.43e-10;2!UBERON:0004801;1.43e-10;2!UBERON:0000160;1.36e-09;17!UBERON:0000949;1.08e-08;43!UBERON:0005409;1.24e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.89e-24,19;UBERON:0006925,5.89e-24,19;UBERON:0008836,5.89e-24,19;UBERON:0008835,1.02e-20,22;UBERON:0003894,1.02e-20,22;UBERON:0009854,7.93e-20,23;UBERON:0007499,2.96e-18,25;UBERON:0009497,2.96e-18,25;UBERON:0000015,2.96e-18,25;UBERON:0002423,2.96e-18,25;UBERON:0006235,2.96e-18,25;UBERON:0004161,2.96e-18,25;UBERON:0009856,1.47e-17,26;UBERON:0002108,2.70e-15,4;UBERON:0002365,9.44e-15,31;UBERON:0002330,9.44e-15,31;UBERON:0002368,4.44e-13,35;UBERON:0003929,5.84e-12,54;UBERON:0006955,1.43e-10,2;UBERON:0004801,1.43e-10,2;UBERON:0000949,3.44e-10,45;UBERON:0000160,1.36e-09,17;UBERON:0004921,3.02e-09,118;UBERON:0005172,1.69e-08,54;UBERON:0005173,1.69e-08,54;UBERON:0005911,8.16e-08,82;UBERON:0002530,8.86e-08,59;UBERON:0002417,1.19e-07,60;UBERON:0000916,1.19e-07,60;UBERON:0001007,1.97e-07,145;UBERON:0001555,1.97e-07,145;UBERON:0007026,1.97e-07,145;UBERON:0005409,8.20e-07,25 | |||
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| ||
|short_description=p9@GNG4 | |short_description=p9@GNG4 | ||
}} | }} |
Latest revision as of 12:50, 16 September 2015
Short description: | p9@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_GNG4_5end |
Coexpression cluster: | C1453_argyrophil_hepatocellular_Intestinal_small_liver_hepatoblastoma_gastrointestinal |
Association with transcript: | -291bp_to_ENST00000366598, ENST00000450593, NM_001098721, NM_004485, uc001hxh.3, uc009xfz.2_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | P50150B1APZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.34e-24 | 12 |
epithelial cell of cervix | 1.43e-10 | 2 |
endodermal cell | 6.60e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 5.89e-24 | 19 |
digestive gland | 5.89e-24 | 19 |
liver bud | 5.89e-24 | 19 |
hepatic diverticulum | 1.02e-20 | 22 |
liver primordium | 1.02e-20 | 22 |
digestive tract diverticulum | 7.93e-20 | 23 |
epithelial sac | 2.96e-18 | 25 |
epithelium of foregut-midgut junction | 2.96e-18 | 25 |
anatomical boundary | 2.96e-18 | 25 |
hepatobiliary system | 2.96e-18 | 25 |
foregut-midgut junction | 2.96e-18 | 25 |
septum transversum | 2.96e-18 | 25 |
sac | 1.47e-17 | 26 |
small intestine | 2.70e-15 | 4 |
exocrine gland | 9.44e-15 | 31 |
exocrine system | 9.44e-15 | 31 |
endocrine gland | 4.44e-13 | 35 |
gut epithelium | 5.84e-12 | 54 |
uterine epithelium | 1.43e-10 | 2 |
cervix epithelium | 1.43e-10 | 2 |
endocrine system | 3.44e-10 | 45 |
intestine | 1.36e-09 | 17 |
subdivision of digestive tract | 3.02e-09 | 118 |
abdomen element | 1.69e-08 | 54 |
abdominal segment element | 1.69e-08 | 54 |
endo-epithelium | 8.16e-08 | 82 |
gland | 8.86e-08 | 59 |
abdominal segment of trunk | 1.19e-07 | 60 |
abdomen | 1.19e-07 | 60 |
digestive system | 1.97e-07 | 145 |
digestive tract | 1.97e-07 | 145 |
primitive gut | 1.97e-07 | 145 |
gastrointestinal system | 8.20e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 8.21e-08 | 39 |