FFCP PHASE1:Hg19::chr17:38609343..38609359,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38609343..38609359,- | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38609343..38609359,- | |description=CAGE_peak_at_chr17:38609343..38609359,- | ||
|id=chr17:38609343..38609359,- | |id=chr17:38609343..38609359,- | ||
|ontology_enrichment_celltype=CL:0000055!1.54e-20!180;CL:0000183!3.32e-15!59;CL:0000222!6.64e-15!119;CL:0000680!2.84e-14!57;CL:0000056!2.84e-14!57;CL:0000355!2.84e-14!57;CL:0000187!5.20e-13!54;CL:0000057!9.30e-12!75;CL:0000192!5.83e-11!42;CL:0000514!5.83e-11!42;CL:0000393!3.88e-10!60;CL:0000211!3.88e-10!60;CL:0000359!3.89e-08!32;CL:0002371!4.15e-07!591 | |ontology_enrichment_celltype=CL:0000055!1.54e-20!180;CL:0000183!3.32e-15!59;CL:0000222!6.64e-15!119;CL:0000680!2.84e-14!57;CL:0000056!2.84e-14!57;CL:0000355!2.84e-14!57;CL:0000187!5.20e-13!54;CL:0000057!9.30e-12!75;CL:0000192!5.83e-11!42;CL:0000514!5.83e-11!42;CL:0000393!3.88e-10!60;CL:0000211!3.88e-10!60;CL:0000359!3.89e-08!32;CL:0002371!4.15e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0002540;4.88e-08;6!CL:0000153;5.53e-08;9!CL:0000447;5.53e-08;9!CL:0000136;6.73e-08;13!CL:0002564;5.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.31e-11,76;CL:0000048,2.32e-08,427;CL:0002320,5.09e-08,361;CL:0002540,5.48e-08,6;CL:0000153,5.60e-08,9;CL:0000447,5.60e-08,9;CL:0000723,5.75e-08,433;CL:0000034,1.83e-07,441;CL:0002564,5.31e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.74e-16!83;UBERON:0002329!3.74e-16!83;UBERON:0003077!3.74e-16!83;UBERON:0003059!3.74e-16!83;UBERON:0007282!3.74e-16!83;UBERON:0009618!3.74e-16!83;UBERON:0007285!3.74e-16!83;UBERON:0002385!4.91e-15!63;UBERON:0001015!4.91e-15!63;UBERON:0000383!4.91e-15!63;UBERON:0004290!7.26e-15!70;UBERON:0005256!8.64e-15!143;UBERON:0001134!1.23e-14!61;UBERON:0002036!1.23e-14!61;UBERON:0003082!1.23e-14!61;UBERON:0002100!1.30e-14!216;UBERON:0000486!8.90e-14!82;UBERON:0000490!9.34e-14!138;UBERON:0002049!2.79e-11!79;UBERON:0007798!2.79e-11!79;UBERON:0004872!5.29e-10!84;UBERON:0003914!8.12e-10!118;UBERON:0001637!5.34e-09!42;UBERON:0003509!5.34e-09!42;UBERON:0004572!5.34e-09!42;UBERON:0001981!2.05e-08!60;UBERON:0007500!2.05e-08!60;UBERON:0004537!2.05e-08!60;UBERON:0006965!2.05e-08!60;UBERON:0000475!2.45e-08!365;UBERON:0004535!2.56e-08!110;UBERON:0000055!3.44e-08!69;UBERON:0001009!5.21e-08!113;UBERON:0000926!5.43e-07!448;UBERON:0004120!5.43e-07!448;UBERON:0006603!5.43e-07!448;UBERON:0003104!7.95e-07!238;UBERON:0009142!7.95e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.71e-12;8!UBERON:0000982;2.71e-12;8!UBERON:0004770;2.71e-12;8!UBERON:0004457;4.72e-12;9!UBERON:0000042;4.72e-12;9!UBERON:0011135;1.33e-10;5!UBERON:0002216;1.33e-10;5!UBERON:0011134;1.33e-10;5!UBERON:0002209;1.33e-10;5!UBERON:0002213;1.33e-10;5!UBERON:0007844;1.33e-10;5!UBERON:0011138;1.33e-10;5!UBERON:0001130;1.33e-10;5!UBERON:0001066;1.33e-10;5!UBERON:0001468;1.33e-10;5!UBERON:0003688;3.87e-10;6!UBERON:0002358;3.87e-10;6!UBERON:0003684;3.87e-10;6!UBERON:0001178;3.87e-10;6!UBERON:0005284;2.47e-08;5!UBERON:0004765;3.85e-08;26!UBERON:0001434;2.97e-07;36!UBERON:0002242;5.12e-07;3!UBERON:0000075;5.71e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.84e-12,8;UBERON:0000982,2.84e-12,8;UBERON:0004770,2.84e-12,8;UBERON:0011135,1.37e-10,5;UBERON:0002216,1.37e-10,5;UBERON:0011134,1.37e-10,5;UBERON:0002209,1.37e-10,5;UBERON:0002213,1.37e-10,5;UBERON:0005856,1.37e-10,5;UBERON:0005866,1.37e-10,5;UBERON:0005863,1.37e-10,5;UBERON:0007844,1.37e-10,5;UBERON:0011138,1.37e-10,5;UBERON:0001130,1.37e-10,5;UBERON:0001066,1.37e-10,5;UBERON:0001468,1.37e-10,5;UBERON:0003688,4.54e-10,6;UBERON:0002358,4.54e-10,6;UBERON:0003684,4.54e-10,6;UBERON:0001178,4.54e-10,6;UBERON:0004457,1.49e-08,12;UBERON:0000042,1.49e-08,12;UBERON:0005284,1.63e-08,5;UBERON:0002384,9.81e-08,371;UBERON:0002242,5.31e-07,3;UBERON:0003068,5.31e-07,3;UBERON:0002328,5.31e-07,3;UBERON:0004880,5.31e-07,3;UBERON:0000075,5.85e-07,16 | |||
|phase1_expression=3.45188920614058,1.71280419112787,1.40954404095971,3.00219895059391,3.5756887554183,5.23403114460221,2.53299878168311,0.631719873426831,2.08948502559871,0,0,0,0,4.57935505952172,9.61052389610956,0,1.20538905604795,0.730310090387373,0,0.123121058076788,0.408001382488506,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0.447830948479849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0.670700859703636,0.639312809217652,7.95166135246046,6.01605492763067,9.41502373245354,0,5.83961844363163,0,0.221729397462564,0.43917392846563,0.261958150995425,0.364295288292542,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,0,1.25849830862972,1.37559020970034,0.417989933073621,0.258416759169329,0,0,0,0.760272105718513,0.488124115096339,0.367663080345869,1.62028389576352,0.17859945656816,0.44905874525234,0.788280363383256,0,0,0.916008719652036,0,0,0,0.993943903390637,0.25326102332916,0.264818361626438,1.72101972449288,0,1.68203280042692,0,1.72667283892012,0.311211035399766,0,0.163461903113459,1.36221684880438,2.30470369792,0.468642863667593,1.24864030732128,0.570471821544449,1.04614076386261,0,0.161872944368132,0.140450806702248,1.02077085627447,0.368502951935304,1.03325781175765,3.56400857184616,5.43987244412825,0,2.15585442544872,0.336672227908132,0.125118519871964,0,0.877955241761676,7.66219489497549,4.8076178850111,0,0.179389635688862,1.49490172172997,0.847727604638247,0.900273288253207,0.103052529238439,1.03056216018252,1.30281799432113,0,0.0974370051611986,0,1.56484827691909,0.80823028409406,0,0.403008392910561,1.01736355386293,0.193260853163297,0,0,0,0,0,0.207322110030741,0,0.36497735907583,1.56449532329816,0,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,0,0.122988438543114,0.343135620597051,0.109750285408626,0,0,0,0,2.07986957055916,1.44331342025273,0.115930404975077,0.821860859650752,0.288732895522148,0.462985512576611,0.380508304469197,0.790204397959275,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.336393253036082,0.43596006883328,0.8800594298514,0.258543431515556,3.57656445851882,1.690605505112,1.32969058292435,2.08014873822732,2.05765899409714,2.83698264046557,2.39779961114489,1.42977993658148,1.62786481617433,0,0.977208552881205,1.42156779497018,4.75171123760058,0.602878754119172,0,2.39935178836937,0,0.502257091432126,0,0.239624855491583,1.14861935834114,0,0.579125226670317,2.87666851570537,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,3.43536176813592,12.5042630264919,7.86668568729233,2.9115920614313,2.85486382075459,1.26161932027148,2.10854546986884,1.50473049863859,4.5481500811197,1.03473071292505,1.32845119707087,1.47495334833363,0.347534457872331,1.56640925970192,2.05886054286514,0,0,0,2.12189300012382,0,0.604780586659361,0.744323423456331,0.306923946576125,2.24528075546459,2.30650468660262,1.02341449813341,1.76939313257968,2.96836132889982,0.308419387605311,1.24293207719189,0.410635780069046,0,1.27831416305955,0,0,0,0,0.910455840033585,0.786746489756545,0,0.15403067420883,1.56869953835371,0,0.316654886678627,1.13733384070897,0.340187410553031,0.863663664408557,0,0.541892875087706,3.01013864312912,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0,0.618246069886334,0.0915694648183434,0,0,0,0,0.96670718292122,1.3864375540318,1.84204409671355,0,0.859361958946189,2.32026710262766,0.596586391912706,0.623224249527161,0,0,0,0.10115778085555,2.78907329578371,0.94443704049192,0.6970372701606,0.308033580176089,0,0,1.29726953372744,0.429374660225974,1.86079184679834,2.84741482246853,1.33441135746677,0.255897791311334,0.42793898803392,2.86382923133343,0,0.539617372749944,0.54907405947211,0.235624804691373,1.41527737101321,1.58510321173008,1.68503382495592,0.48763373908959,0.974853958525138,0,0.818999468447914,0.848432591722276,1.13008116620243,2.75682671773062,0.66343897524122,2.63070531152258,1.73632660280006,0.655894752046633,0.608731130888112,0.6196469961995,0.845086807596724,0,0.392996164052485,0.7133421029625,0.354761064070598,9.28873595309722,11.5253212535966,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,0.376575203107117,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0.333926115068718,0,0,0.597743964753209,0,0,0.102268682502155,0,1.55519793830904,0.179736702294654,0.179021174675609,0,0.295930216910801,0,1.11136990144637,0,0,0,0.260427761085233,0,1.44999915086959,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0.638002319463839,0.366390373607449,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0.0884575645033392,1.83309043480088,0,0,0,0,0.802577647298789,0,0,0,0,1.18375320854817,0,0,0.821425535170343,0,0,1.32930774541437,0,0.31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| ||
|short_description=p@chr17:38609343..38609359,- | |short_description=p@chr17:38609343..38609359,- | ||
}} | }} |
Latest revision as of 16:27, 25 July 2015
Short description: | p@chr17:38609343..38609359, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38609343..38609359, - |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.31e-11 | 76 |
multi fate stem cell | 2.32e-08 | 427 |
connective tissue cell | 5.09e-08 | 361 |
mesenchymal stem cell of the bone marrow | 5.48e-08 | 6 |
GAG secreting cell | 5.60e-08 | 9 |
carbohydrate secreting cell | 5.60e-08 | 9 |
somatic stem cell | 5.75e-08 | 433 |
stem cell | 1.83e-07 | 441 |
nucleus pulposus cell of intervertebral disc | 5.31e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.84e-12 | 8 |
skeletal joint | 2.84e-12 | 8 |
articular system | 2.84e-12 | 8 |
intervertebral cartilage | 1.37e-10 | 5 |
symphysis | 1.37e-10 | 5 |
nonsynovial joint | 1.37e-10 | 5 |
fibrous joint | 1.37e-10 | 5 |
cartilaginous joint | 1.37e-10 | 5 |
developing mesenchymal condensation | 1.37e-10 | 5 |
pre-cartilage condensation | 1.37e-10 | 5 |
cartilaginous condensation | 1.37e-10 | 5 |
cartilage element | 1.37e-10 | 5 |
post-cranial axial skeletal system | 1.37e-10 | 5 |
vertebral column | 1.37e-10 | 5 |
intervertebral disk | 1.37e-10 | 5 |
intervertebral joint | 1.37e-10 | 5 |
omentum | 4.54e-10 | 6 |
peritoneum | 4.54e-10 | 6 |
abdominal cavity | 4.54e-10 | 6 |
visceral peritoneum | 4.54e-10 | 6 |
cavity lining | 1.49e-08 | 12 |
serous membrane | 1.49e-08 | 12 |
brain vasculature | 1.63e-08 | 5 |
connective tissue | 9.81e-08 | 371 |
nucleus pulposus | 5.31e-07 | 3 |
axial mesoderm | 5.31e-07 | 3 |
notochord | 5.31e-07 | 3 |
chordamesoderm | 5.31e-07 | 3 |
subdivision of skeletal system | 5.85e-07 | 16 |