FFCP PHASE1:Hg19::chr21:47535780..47535815,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BUM6 | |UniProt=Q9BUM6 | ||
|association_with_transcript=-138bp_to_BC002484_5end | |association_with_transcript=-138bp_to_BC002484_5end | ||
|cluster_id=chr21:47535780..47535815,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_17_at_COL6A2_5end | |description=CAGE_peak_17_at_COL6A2_5end | ||
|id=chr21:47535780..47535815,+ | |id=chr21:47535780..47535815,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.66e-39!180;CL:0000057!9.72e-26!75;CL:0000680!9.34e-14!57;CL:0000056!9.34e-14!57;CL:0000355!9.34e-14!57;CL:0000187!6.55e-13!54;CL:0000048!1.31e-12!430;CL:0000183!1.73e-12!59;CL:0000723!6.10e-12!436;CL:0000034!2.70e-11!444;CL:0002620!2.86e-11!23;CL:0000393!1.23e-10!60;CL:0000211!1.23e-10!60;CL:0000192!1.04e-08!42;CL:0000514!1.04e-08!42;CL:0000499!1.07e-07!27;CL:0002320!7.96e-07!365;CL:0002334!8.48e-07!12 | |ontology_enrichment_celltype=CL:0000055!1.66e-39!180;CL:0000057!9.72e-26!75;CL:0000680!9.34e-14!57;CL:0000056!9.34e-14!57;CL:0000355!9.34e-14!57;CL:0000187!6.55e-13!54;CL:0000048!1.31e-12!430;CL:0000183!1.73e-12!59;CL:0000723!6.10e-12!436;CL:0000034!2.70e-11!444;CL:0002620!2.86e-11!23;CL:0000393!1.23e-10!60;CL:0000211!1.23e-10!60;CL:0000192!1.04e-08!42;CL:0000514!1.04e-08!42;CL:0000499!1.07e-07!27;CL:0002320!7.96e-07!365;CL:0002334!8.48e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002620;4.28e-13;23!CL:0000499;5.37e-09;28!CL:0000723;1.33e-08;61!CL:0002320;2.07e-08;188!CL:0000057;3.79e-08;73!CL:0000134;6.67e-08;55!CL:0000048;3.44e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.73e-21,76;CL:0000048,1.53e-16,427;CL:0000723,7.46e-16,433;CL:0000034,5.72e-15,441;CL:0002620,8.56e-13,23;CL:0002320,3.31e-12,361;CL:0000134,9.76e-10,354;CL:0000187,1.53e-09,55;CL:0000499,7.29e-09,28;CL:0000680,1.13e-08,58;CL:0000056,1.13e-08,58;CL:0000355,1.13e-08,58;CL:0000219,3.98e-08,386;CL:0000393,6.69e-08,61;CL:0000211,6.69e-08,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.93e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.77e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.33e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.02e-18!83;UBERON:0002329!3.02e-18!83;UBERON:0003077!3.02e-18!83;UBERON:0003059!3.02e-18!83;UBERON:0007282!3.02e-18!83;UBERON:0009618!3.02e-18!83;UBERON:0007285!3.02e-18!83;UBERON:0004290!9.01e-17!70;UBERON:0000486!7.37e-14!82;UBERON:0001134!2.70e-13!61;UBERON:0002036!2.70e-13!61;UBERON:0003082!2.70e-13!61;UBERON:0002385!2.92e-13!63;UBERON:0001015!2.92e-13!63;UBERON:0000383!2.92e-13!63;UBERON:0005256!3.61e-12!143;UBERON:0002199!6.36e-09!45;UBERON:0002416!6.36e-09!45;UBERON:0003102!4.27e-08!95;UBERON:0002100!4.83e-08!216;UBERON:0001013!4.96e-08!14;UBERON:0002384!3.90e-07!375;UBERON:0007100!7.19e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.19e-08;14!UBERON:0002199;1.29e-08;46!UBERON:0002416;1.29e-08;46!UBERON:0002384;1.47e-08;198!UBERON:0003102;6.17e-07;50!UBERON:0002385;8.24e-07;31!UBERON:0001015;8.24e-07;31!UBERON:0000383;8.24e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.25e-12,73;UBERON:0002329,2.63e-12,71;UBERON:0003059,2.63e-12,71;UBERON:0007282,2.63e-12,71;UBERON:0004290,2.63e-12,71;UBERON:0009618,2.63e-12,71;UBERON:0003077,5.35e-12,72;UBERON:0007285,5.35e-12,72;UBERON:0002199,7.27e-12,46;UBERON:0002416,7.27e-12,46;UBERON:0002384,1.30e-11,371;UBERON:0000486,6.53e-11,83;UBERON:0007503,2.51e-10,78;UBERON:0005256,2.92e-09,122;UBERON:0002097,6.13e-09,41;UBERON:0001013,8.91e-09,14;UBERON:0002385,9.54e-09,64;UBERON:0001015,9.54e-09,64;UBERON:0000383,9.54e-09,64;UBERON:0001134,1.78e-08,62;UBERON:0002036,1.78e-08,62;UBERON:0003082,1.78e-08,62;UBERON:0003102,2.83e-08,99;UBERON:0003104,1.02e-07,160;UBERON:0009142,1.02e-07,160 | |||
|phase1_expression=0.908391896352783,2.99740733447376,0.422863212287913,7.00513088471913,0.893922188854576,4.36169262050184,2.53299878168311,0.631719873426831,6.00726944859629,0,0,0,0,1.73272894144065,4.30816588446291,0,4.21886169616784,2.19093027116212,4.87932798790507,0.738726348460727,2.85600967741954,3.13454721478088,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0.534880391567015,0,2.43806866313962,0,0.255725123687061,2.53007406669196,0.50133791063589,3.33146993609895,1.5905718941022,3.40644409211845,0.0945348171640679,0,0,0.327447688744282,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,1.19168262731897,4.30254931123221,0.709336764396714,1.68203280042692,0,0.49333509683432,0.311211035399766,1.88594940897563,1.9615428373615,0.756787138224657,2.88087962239999,0.234321431833797,2.18512053781224,0.570471821544449,2.54062756938062,2.70099346880659,2.42809416552197,1.82586048712923,0.61246251376468,3.0708579327942,2.37649296704261,1.18800285728205,4.69807165629258,0.910161361938026,4.31170885089743,0.168336113954066,0.625592599359821,0.277064115484183,0.438977620880838,2.75839016219118,4.05642759047811,0.340296549480063,1.79389635688862,2.13557388818567,1.48352330811693,3.30100205692843,1.13357782162283,1.03056216018252,0.558350568994769,2.36286865137773,1.36411807225678,1.26216887122057,1.10459878370759,4.0411514204703,6.03516307278244,0.503760491138201,1.18692414617341,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,1.56449532329816,14.7945415784364,0,3.25057549622385,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,5.88034845542168,0,0,0.590789906681404,0,0,0,0.109750285408626,0,0,0,0,1.03993478527958,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.308482478109971,0,0,0.224262168690721,1.30788020649984,0.1466765716419,0.646358578788889,0,2.535908257668,0.531876233169741,0,0.514414748524284,0,1.5985330740966,1.00084595560703,1.08524321078289,0.823240336780769,0.977208552881205,1.06617584622764,0,0,0,0.399891964728228,0,0,0,0.958499421966331,1.14861935834114,1.42636905040718,0.723906533337896,0.821905290201534,0.537182889719687,0,0,0.431255149719035,0,0,0,0,0,0,0,0,0,0.49076596687656,4.50153468953709,3.52644530809656,1.03985430765404,0.892144943985809,0.315404830067869,0.585707074963566,1.20378439891088,4.5481500811197,3.10419213877515,1.32845119707087,2.58116835958384,2.34585759063824,1.76221041716467,4.80400793335198,0,0,0,0,0,0.30239029332968,0.496215615637554,1.68808170616869,4.2099014164961,1.15325234330131,0.511707249066704,0.64341568457443,1.48418066444991,3.70103265126373,6.39222211127257,0.328508624055237,0.519254429183621,5.46188778761808,0,0,0,0.918515585316854,3.27764102412091,5.11385218341754,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,6.42735719376638,0.870036464629098,3.54311819363682,3.07007349452259,2.06754858726796,1.18162269355101,3.48040065394148,1.78975917573812,0.979352392114111,0,0,0,0,0,5.98143458978216,0.6970372701606,0.308033580176089,0,0,1.66791797193528,0.858749320451947,0.372158369359667,0,1.5250415513906,0.511795582622668,0.42793898803392,0.95460974377781,1.56989728039846,1.07923474549989,2.74537029736055,1.41374882814824,0.606547444719948,0,0.421258456238981,0.48763373908959,2.68084838594413,7.39551027297288,0,3.11091950298168,2.26016233240486,0.551365343546124,0,1.31535265576129,0,3.9353685122798,0.202910376962704,0.92947049429925,1.97186921772569,0,0.294747123039363,1.07001315444375,2.12856638442359,4.43326034125095,3.62224382255892,0.379473173765715,3.84928192269481,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.47748896947538,0,0,0,0,0.333926115068718,0,0,1.59398390600856,0.276283915531148,0,0.102268682502155,0,0.933118762985422,0,0,0,0.887790650732402,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0.219385397153973,0,0,0.769502585037971,0.113942055847001,0,0,0,0.638002319463839,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,0.611030144933625,0,0,0,0.067401132980677,2.40773294189637,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,1.19472429772959,0,0,0,0,0,2.09672001890436,0.171986032471617,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,1.70762395791482,0.799238438328521,0,0,0,0,0.124252535565433,0,0.271808412147228,0.104602846312333,0.101998217636322,0,0,0,0,0.429765441419957,0,0.837847203816763,0.458320848023367,0.717873024576814,0.399358000997982,0.858452096273142,0.223171457441873,0.134366944973453,1.08089965062721,0,0,0,0,0,0,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| ||
|short_description=p17@COL6A2 | |short_description=p17@COL6A2 | ||
}} | }} |
Latest revision as of 22:57, 18 September 2015
Short description: | p17@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -138bp_to_BC002484_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | Q9BUM6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.73e-21 | 76 |
multi fate stem cell | 1.53e-16 | 427 |
somatic stem cell | 7.46e-16 | 433 |
stem cell | 5.72e-15 | 441 |
skin fibroblast | 8.56e-13 | 23 |
connective tissue cell | 3.31e-12 | 361 |
mesenchymal cell | 9.76e-10 | 354 |
muscle cell | 1.53e-09 | 55 |
stromal cell | 7.29e-09 | 28 |
muscle precursor cell | 1.13e-08 | 58 |
myoblast | 1.13e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.13e-08 | 58 |
motile cell | 3.98e-08 | 386 |
electrically responsive cell | 6.69e-08 | 61 |
electrically active cell | 6.69e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.25e-12 | 73 |
somite | 2.63e-12 | 71 |
presomitic mesoderm | 2.63e-12 | 71 |
presumptive segmental plate | 2.63e-12 | 71 |
dermomyotome | 2.63e-12 | 71 |
trunk paraxial mesoderm | 2.63e-12 | 71 |
paraxial mesoderm | 5.35e-12 | 72 |
presumptive paraxial mesoderm | 5.35e-12 | 72 |
integument | 7.27e-12 | 46 |
integumental system | 7.27e-12 | 46 |
connective tissue | 1.30e-11 | 371 |
multilaminar epithelium | 6.53e-11 | 83 |
epithelial vesicle | 2.51e-10 | 78 |
trunk mesenchyme | 2.92e-09 | 122 |
skin of body | 6.13e-09 | 41 |
adipose tissue | 8.91e-09 | 14 |
muscle tissue | 9.54e-09 | 64 |
musculature | 9.54e-09 | 64 |
musculature of body | 9.54e-09 | 64 |
skeletal muscle tissue | 1.78e-08 | 62 |
striated muscle tissue | 1.78e-08 | 62 |
myotome | 1.78e-08 | 62 |
surface structure | 2.83e-08 | 99 |
mesenchyme | 1.02e-07 | 160 |
entire embryonic mesenchyme | 1.02e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.33e-09 | 14 |