FFCP PHASE1:Hg19::chr3:146517344..146517356,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:146517344..146517356,+ | |||
|coexpression_cluster_id=C1144 | |||
|description=CAGE_peak_at_chr3:146517344..146517356,+ | |description=CAGE_peak_at_chr3:146517344..146517356,+ | ||
|id=chr3:146517344..146517356,+ | |id=chr3:146517344..146517356,+ | ||
|ontology_enrichment_celltype=CL:0000708!5.59e-30!3;CL:0002549!1.26e-20!2;CL:0002590!5.73e-14!3;CL:0000327!7.56e-07!14 | |ontology_enrichment_celltype=CL:0000708!5.59e-30!3;CL:0002549!1.26e-20!2;CL:0002590!5.73e-14!3;CL:0000327!7.56e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002549;3.96e-66;2!CL:0000708;1.09e-44;3!CL:0002590;1.96e-12;3!CL:0000327;7.92e-10;15!CL:0002543;8.97e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,3.96e-66,2;CL:0000708,7.81e-45,3;CL:0002590,2.07e-12,3;CL:0000327,7.41e-10,15;CL:0002543,9.49e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005284!1.79e-31!5;UBERON:0003210!5.59e-30!3;UBERON:0002240!5.18e-29!3;UBERON:0003947!1.26e-20!2;UBERON:0005629!1.26e-20!2;UBERON:0005358!1.26e-20!2;UBERON:0001886!1.26e-20!2;UBERON:0004086!1.26e-20!2;UBERON:0005282!1.26e-20!2;UBERON:0005281!1.26e-20!2;UBERON:0001017!8.37e-20!82;UBERON:0005743!8.37e-19!86;UBERON:0005174!1.11e-17!5;UBERON:0001137!1.11e-17!5;UBERON:0000073!7.46e-17!94;UBERON:0001016!7.46e-17!94;UBERON:0002200!1.83e-14!11;UBERON:0006876!1.83e-14!11;UBERON:0000955!2.02e-14!69;UBERON:0006238!2.02e-14!69;UBERON:0002616!2.70e-14!59;UBERON:0002300!4.42e-14!3;UBERON:0001049!8.18e-12!57;UBERON:0005068!8.18e-12!57;UBERON:0006241!8.18e-12!57;UBERON:0007135!8.18e-12!57;UBERON:0007190!1.10e-10!1;UBERON:0001882!1.21e-10!1;UBERON:0005403!1.21e-10!1;UBERON:0002902!1.46e-10!1;UBERON:0009899!1.46e-10!1;UBERON:0002336!1.77e-10!1;UBERON:0001018!1.77e-10!1;UBERON:0002473!1.77e-10!1;UBERON:0005340!1.77e-10!1;UBERON:0002316!1.77e-10!1;UBERON:0003544!1.77e-10!1;UBERON:0001020!1.77e-10!1;UBERON:0005970!1.77e-10!1;UBERON:0002437!1.77e-10!1;UBERON:0003076!2.84e-10!15;UBERON:0003057!2.84e-10!15;UBERON:0004121!1.63e-08!169;UBERON:0000924!2.86e-08!173;UBERON:0006601!2.86e-08!173;UBERON:0003075!1.80e-07!86;UBERON:0007284!1.80e-07!86;UBERON:0000033!1.83e-07!123;UBERON:0002346!4.34e-07!90;UBERON:0000153!4.81e-07!129;UBERON:0007811!4.81e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0005629;3.96e-66;2!UBERON:0005358;3.96e-66;2!UBERON:0001886;3.96e-66;2!UBERON:0004086;3.96e-66;2!UBERON:0005282;3.96e-66;2!UBERON:0005281;3.96e-66;2!UBERON:0005284;1.22e-59;5!UBERON:0003210;1.09e-44;3!UBERON:0006876;1.12e-27;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005629,3.96e-66,2;UBERON:0005358,3.96e-66,2;UBERON:0001886,3.96e-66,2;UBERON:0004086,3.96e-66,2;UBERON:0005282,3.96e-66,2;UBERON:0005281,3.96e-66,2;UBERON:0005284,1.35e-59,5;UBERON:0003210,7.81e-45,3;UBERON:0006876,1.17e-27,11;UBERON:0002049,2.61e-07,78;UBERON:0007798,2.61e-07,78 | |||
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|short_description=p@chr3:146517344..146517356,+ | |short_description=p@chr3:146517344..146517356,+ | ||
}} | }} |
Latest revision as of 16:41, 29 July 2015
Short description: | p@chr3:146517344..146517356, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:146517344..146517356, + |
Coexpression cluster: | C1144_Meningeal_Fibroblast_mesenchymal_ductal_Smooth_Preadipocyte_Pericytes |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 3.96e-66 | 2 |
leptomeningeal cell | 7.81e-45 | 3 |
smooth muscle cell of the brain vasculature | 2.07e-12 | 3 |
extracellular matrix secreting cell | 7.41e-10 | 15 |
vein endothelial cell | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
vascular plexus | 3.96e-66 | 2 |
ventricle of nervous system | 3.96e-66 | 2 |
choroid plexus | 3.96e-66 | 2 |
brain ventricle | 3.96e-66 | 2 |
ventricular system of brain | 3.96e-66 | 2 |
ventricular system of central nervous system | 3.96e-66 | 2 |
brain vasculature | 1.35e-59 | 5 |
blood-cerebrospinal fluid barrier | 7.81e-45 | 3 |
vasculature of organ | 1.17e-27 | 11 |
vasculature | 2.61e-07 | 78 |
vascular system | 2.61e-07 | 78 |