FFCP PHASE1:Hg19::chr1:151028802..151028816,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56882 | |EntrezGene=56882 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=17719 | |HGNC=17719 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NRR8 | |UniProt=Q9NRR8 | ||
|association_with_transcript=-418bp_to_BC012796_5end | |association_with_transcript=-418bp_to_BC012796_5end | ||
|cluster_id=chr1:151028802..151028816,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_CDC42SE1_5end | |description=CAGE_peak_2_at_CDC42SE1_5end | ||
|id=chr1:151028802..151028816,- | |id=chr1:151028802..151028816,- | ||
|ontology_enrichment_celltype=CL:0000738!2.31e-39!140;CL:0000037!6.34e-34!172;CL:0000566!6.34e-34!172;CL:0002032!1.49e-31!165;CL:0000837!1.49e-31!165;CL:0000988!1.17e-30!182;CL:0000838!1.06e-29!52;CL:0002087!3.40e-29!119;CL:0002031!5.41e-29!124;CL:0000542!6.81e-29!53;CL:0000051!6.81e-29!53;CL:0000791!1.30e-25!18;CL:0000789!1.30e-25!18;CL:0002420!1.30e-25!18;CL:0002419!1.30e-25!18;CL:0000790!1.30e-25!18;CL:0000084!2.53e-22!25;CL:0000827!2.53e-22!25;CL:0000625!1.39e-16!11;CL:0000236!1.80e-11!14;CL:0000624!1.19e-09!6;CL:0000763!5.40e-09!112;CL:0000049!5.40e-09!112;CL:0000766!2.08e-08!76;CL:0000094!2.80e-08!8;CL:0000945!2.34e-07!24;CL:0000826!2.34e-07!24 | |ontology_enrichment_celltype=CL:0000738!2.31e-39!140;CL:0000037!6.34e-34!172;CL:0000566!6.34e-34!172;CL:0002032!1.49e-31!165;CL:0000837!1.49e-31!165;CL:0000988!1.17e-30!182;CL:0000838!1.06e-29!52;CL:0002087!3.40e-29!119;CL:0002031!5.41e-29!124;CL:0000542!6.81e-29!53;CL:0000051!6.81e-29!53;CL:0000791!1.30e-25!18;CL:0000789!1.30e-25!18;CL:0002420!1.30e-25!18;CL:0002419!1.30e-25!18;CL:0000790!1.30e-25!18;CL:0000084!2.53e-22!25;CL:0000827!2.53e-22!25;CL:0000625!1.39e-16!11;CL:0000236!1.80e-11!14;CL:0000624!1.19e-09!6;CL:0000763!5.40e-09!112;CL:0000049!5.40e-09!112;CL:0000766!2.08e-08!76;CL:0000094!2.80e-08!8;CL:0000945!2.34e-07!24;CL:0000826!2.34e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000791;9.59e-43;18!CL:0000789;9.59e-43;18!CL:0002419;9.59e-43;18!CL:0000084;1.15e-32;25!CL:0000625;3.41e-27;11!CL:0000542;4.55e-26;53!CL:0000236;3.97e-21;13!CL:0000624;2.22e-15;6!CL:0000094;2.63e-13;8!CL:0000945;2.84e-10;24!CL:0000081;2.14e-09;11!CL:0000898;5.80e-09;3!CL:0002087;1.18e-08;104!CL:0000226;6.25e-08;3!CL:0000842;6.25e-08;3!CL:0000623;9.76e-08;3!CL:0000767;1.66e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.07e-44,52;CL:0000542,3.22e-43,53;CL:0000051,3.22e-43,53;CL:0000791,1.01e-42,18;CL:0000789,1.01e-42,18;CL:0002420,1.01e-42,18;CL:0002419,1.01e-42,18;CL:0000790,1.01e-42,18;CL:0000084,1.22e-32,25;CL:0000827,1.22e-32,25;CL:0000738,4.36e-30,136;CL:0000625,3.16e-27,11;CL:0002087,1.85e-23,115;CL:0000037,4.50e-23,168;CL:0000988,3.05e-21,177;CL:0002032,7.01e-21,161;CL:0000837,7.01e-21,161;CL:0002031,1.71e-20,120;CL:0000236,2.30e-19,14;CL:0000624,2.28e-15,6;CL:0000094,2.38e-13,8;CL:0000945,3.08e-10,24;CL:0000826,3.08e-10,24;CL:0000081,1.99e-09,11;CL:0000898,5.66e-09,3;CL:0000226,5.89e-08,3;CL:0000842,5.89e-08,3;CL:0000623,9.31e-08,3;CL:0000825,9.31e-08,3;CL:0000767,1.57e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;9.59e-43;18!CL:0000051;4.55e-26;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.05e-13!102;UBERON:0003061!1.05e-13!102;UBERON:0002193!5.35e-13!112;UBERON:0000178!6.22e-13!15;UBERON:0000179!6.22e-13!15;UBERON:0000463!6.22e-13!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.53e-22;15!UBERON:0000179;7.53e-22;15!UBERON:0000463;7.53e-22;15!UBERON:0002390;1.08e-09;32!UBERON:0002193;1.55e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.78e-22,15;UBERON:0000179,6.78e-22,15;UBERON:0000463,6.78e-22,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,7.47392126012918,4.98978217526377,2.47705797305722,0,0,0,0,0,0,2.21598163412751,1.80490002723128,3.03815219002193,0,4.21061765824673,0.257575567634187,0.145398238779565,0,0.242584061187816,0.464858073811369,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0,0.545812300115692,0.224723484445085,0.918251677112708,0,0,0,0.199463657621632,0,0.580418477257168,0,0,0,0,0,0,0.368277635987565,0.316462387440884,0,0,0.209658645508376,0.112328631146495,0,0,0.285012743741249,0.59675003159727,0.365328307529268,17.5996244461323,14.1996038928154,13.3426388079533,4.69403244823158,14.8146515203325,12.6445536789986,18.5092564379761,11.4486450544244,7.39976859842283,4.11066032559657,6.11637165000366,0,0,0.263384084775077,13.3762643677406,8.25322601773246,8.22405995998037,27.7529582348526,42.3698946623668,32.6678985956966,38.9653456815823,15.8202848776946,17.6763544484902,18.1657793558569,31.1424443329768,12.4248580133905,18.208308658383,5.75532666112866,4.42160028457357,11.8819265151372,40.7788048695666,45.4819407752512,32.4060123795428,11.8974809832444,16.4784812248826,22.6794114018536,19.9885556695407,32.4936722610579,18.2303367079797,16.1576847556224,22.7368429807437,36.7321574013181,22.4875307794223,27.2293839850619,13.9591759476578,6.8546292696409,5.88368430723716,8.25499102131954,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9068250461638,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00876629594175,8.47232268868287,4.74380664690938,6.67383788654692,0,0,0,0,0,3.74503511973591,0,2.48649308061621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.0602257763563,7.98142543028882,4.802740101155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,14.7159806677329,15.2927441428475,9.1143549947866,18.105614934792,18.5113022888787,14.9148861574325,11.8806916192385,15.8625035258854,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.6836125981514,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0.394573622547734,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0.278847488557207,0.0769502585037971,0,0,0,0.217294743844016,0,0,0,0,0,0.831058409500782,0,0.588187602953219,0.671286347903371,0,0,0,0,0,0,0.995261931078505,0.176915129006678,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,2.4747128070665,1.5476039091159,0,0,0.236417121897595,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,0,0,0,0,0.13223260174269,0,0,0.320362237703084,0.471612915298998,1.24271716604159,1.9846640872478,0.592834895693833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.265729680626726,0.327130788511688,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0.280272163313789,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0.11294608203896,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,1.78569444161722,0.837952543656503,0,0,0,0,0,1.37618785021362,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.639701945702943,0,0.387533459016037,0.931120714437869,0,0,0,0,0,2.6940821205835,0.215166616178029,0,0,0,0,0,0,0,0,0.665756774185513,2.21401172950129,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,7.47392126012918,4.98978217526377,2.47705797305722,0,0,0,0,0,0,2.21598163412751,1.80490002723128,3.03815219002193,0,4.21061765824673,0.257575567634187,0.145398238779565,0,0.242584061187816,0.464858073811369,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0,0.545812300115692,0.224723484445085,0.918251677112708,0,0,0,0.199463657621632,0,0.580418477257168,0,0,0,0,0,0,0.368277635987565,0.316462387440884,0,0,0.209658645508376,0.112328631146495,0,0,0.285012743741249,0.59675003159727,0.365328307529268,17.5996244461323,14.1996038928154,13.3426388079533,4.69403244823158,14.8146515203325,12.6445536789986,18.5092564379761,11.4486450544244,7.39976859842283,4.11066032559657,6.11637165000366,0,0,0.263384084775077,13.3762643677406,8.25322601773246,8.22405995998037,27.7529582348526,42.3698946623668,32.6678985956966,38.9653456815823,15.8202848776946,17.6763544484902,18.1657793558569,31.1424443329768,12.4248580133905,18.208308658383,5.75532666112866,4.42160028457357,11.8819265151372,40.7788048695666,45.4819407752512,32.4060123795428,11.8974809832444,16.4784812248826,22.6794114018536,19.9885556695407,32.4936722610579,18.2303367079797,16.1576847556224,22.7368429807437,36.7321574013181,22.4875307794223,27.2293839850619,13.9591759476578,6.8546292696409,5.88368430723716,8.25499102131954,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9068250461638,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00876629594175,8.47232268868287,4.74380664690938,6.67383788654692,0,0,0,0,0,3.74503511973591,0,2.48649308061621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.0602257763563,7.98142543028882,4.802740101155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,14.7159806677329,15.2927441428475,9.1143549947866,18.105614934792,18.5113022888787,14.9148861574325,11.8806916192385,15.8625035258854,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.6836125981514,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0.394573622547734,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0.278847488557207,0.0769502585037971,0,0,0,0.217294743844016,0,0,0,0,0,0.831058409500782,0,0.588187602953219,0.671286347903371,0,0,0,0,0,0,0.995261931078505,0.176915129006678,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,2.4747128070665,1.5476039091159,0,0,0.236417121897595,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,0,0,0,0,0.13223260174269,0,0,0.320362237703084,0.471612915298998,1.24271716604159,1.9846640872478,0.592834895693833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.265729680626726,0.327130788511688,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0.280272163313789,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0.11294608203896,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,1.78569444161722,0.837952543656503,0,0,0,0,0,1.37618785021362,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.639701945702943,0,0.387533459016037,0.931120714437869,0,0,0,0,0,2.6940821205835,0.215166616178029,0,0,0,0,0,0,0,0,0.665756774185513,2.21401172950129,0 | ||
|short_description=p2@CDC42SE1 | |short_description=p2@CDC42SE1 | ||
}} | }} |
Latest revision as of 23:55, 16 September 2015
Short description: | p2@CDC42SE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CDC42SE1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -418bp_to_BC012796_5end |
EntrezGene: | CDC42SE1 |
HGNC: | 17719 |
UniProt: | Q9NRR8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.07e-44 | 52 |
lymphocyte | 3.22e-43 | 53 |
common lymphoid progenitor | 3.22e-43 | 53 |
mature alpha-beta T cell | 1.01e-42 | 18 |
alpha-beta T cell | 1.01e-42 | 18 |
immature T cell | 1.01e-42 | 18 |
mature T cell | 1.01e-42 | 18 |
immature alpha-beta T cell | 1.01e-42 | 18 |
T cell | 1.22e-32 | 25 |
pro-T cell | 1.22e-32 | 25 |
leukocyte | 4.36e-30 | 136 |
CD8-positive, alpha-beta T cell | 3.16e-27 | 11 |
nongranular leukocyte | 1.85e-23 | 115 |
hematopoietic stem cell | 4.50e-23 | 168 |
hematopoietic cell | 3.05e-21 | 177 |
hematopoietic oligopotent progenitor cell | 7.01e-21 | 161 |
hematopoietic multipotent progenitor cell | 7.01e-21 | 161 |
hematopoietic lineage restricted progenitor cell | 1.71e-20 | 120 |
B cell | 2.30e-19 | 14 |
CD4-positive, alpha-beta T cell | 2.28e-15 | 6 |
granulocyte | 2.38e-13 | 8 |
lymphocyte of B lineage | 3.08e-10 | 24 |
pro-B cell | 3.08e-10 | 24 |
blood cell | 1.99e-09 | 11 |
naive T cell | 5.66e-09 | 3 |
single nucleate cell | 5.89e-08 | 3 |
mononuclear cell | 5.89e-08 | 3 |
natural killer cell | 9.31e-08 | 3 |
pro-NK cell | 9.31e-08 | 3 |
basophil | 1.57e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 6.78e-22 | 15 |
haemolymphatic fluid | 6.78e-22 | 15 |
organism substance | 6.78e-22 | 15 |