FFCP PHASE1:Hg19::chr6:42981635..42981646,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4201 | |EntrezGene=4201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6986 | |HGNC=6986 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_uc010jyc.1_5end | |association_with_transcript=13bp_to_uc010jyc.1_5end | ||
|cluster_id=chr6:42981635..42981646,- | |||
|description=CAGE_peak_3_at_MEA1_5end | |description=CAGE_peak_3_at_MEA1_5end | ||
|id=chr6:42981635..42981646,- | |id=chr6:42981635..42981646,- | ||
|ontology_enrichment_celltype=CL:0000055!5.04e-14!180;CL:0000183!1.70e-10!59;CL:0000393!1.63e-09!60;CL:0000211!1.63e-09!60;CL:0000187!4.91e-09!54;CL:0000680!9.15e-09!57;CL:0000056!9.15e-09!57;CL:0000355!9.15e-09!57;CL:0002321!1.85e-08!248;CL:0000220!1.98e-08!246;CL:0000222!2.31e-08!119;CL:0000359!3.05e-08!32;CL:0000192!3.25e-08!42;CL:0000514!3.25e-08!42 | |ontology_enrichment_celltype=CL:0000055!5.04e-14!180;CL:0000183!1.70e-10!59;CL:0000393!1.63e-09!60;CL:0000211!1.63e-09!60;CL:0000187!4.91e-09!54;CL:0000680!9.15e-09!57;CL:0000056!9.15e-09!57;CL:0000355!9.15e-09!57;CL:0002321!1.85e-08!248;CL:0000220!1.98e-08!246;CL:0000222!2.31e-08!119;CL:0000359!3.05e-08!32;CL:0000192!3.25e-08!42;CL:0000514!3.25e-08!42 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.32e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,8.27e-09,32;CL:0000187,1.38e-08,55;CL:0000393,2.11e-08,61;CL:0000211,2.11e-08,61;CL:0000680,4.12e-08,58;CL:0000056,4.12e-08,58;CL:0000355,4.12e-08,58;CL:0000192,1.54e-07,43;CL:0000514,1.54e-07,43;CL:0000222,5.30e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!1.09e-12!194;UBERON:0000477!1.32e-12!286;UBERON:0000119!1.72e-12!312;UBERON:0000483!3.40e-12!309;UBERON:0004111!1.13e-09!241;UBERON:0000481!1.24e-09!347;UBERON:0000475!2.23e-09!365;UBERON:0000064!5.89e-09!219;UBERON:0000914!1.93e-08!83;UBERON:0002329!1.93e-08!83;UBERON:0003077!1.93e-08!83;UBERON:0003059!1.93e-08!83;UBERON:0007282!1.93e-08!83;UBERON:0009618!1.93e-08!83;UBERON:0007285!1.93e-08!83;UBERON:0004290!7.16e-08!70;UBERON:0003914!8.58e-08!118;UBERON:0000955!1.47e-07!69;UBERON:0006238!1.47e-07!69;UBERON:0002020!1.63e-07!34;UBERON:0003528!1.63e-07!34;UBERON:0001869!1.77e-07!32;UBERON:0000073!2.11e-07!94;UBERON:0001016!2.11e-07!94;UBERON:0001637!2.76e-07!42;UBERON:0003509!2.76e-07!42;UBERON:0004572!2.76e-07!42;UBERON:0001893!2.86e-07!34;UBERON:0001017!2.92e-07!82;UBERON:0005743!3.29e-07!86;UBERON:0000486!5.40e-07!82;UBERON:0001981!6.18e-07!60;UBERON:0007500!6.18e-07!60;UBERON:0004537!6.18e-07!60;UBERON:0006965!6.18e-07!60;UBERON:0001134!6.48e-07!61;UBERON:0002036!6.48e-07!61;UBERON:0003082!6.48e-07!61;UBERON:0000033!6.96e-07!123;UBERON:0002049!7.46e-07!79;UBERON:0007798!7.46e-07!79;UBERON:0002791!8.22e-07!33;UBERON:0000924!9.47e-07!173;UBERON:0006601!9.47e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.13e-07;32!UBERON:0003528;2.77e-07;34!UBERON:0002020;2.77e-07;34!UBERON:0000956;5.00e-07;25!UBERON:0000203;5.00e-07;25!UBERON:0001893;5.46e-07;34!UBERON:0002791;5.52e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000025,1.73e-12,192;UBERON:0000119,1.52e-10,309;UBERON:0007503,1.53e-10,78;UBERON:0000483,1.86e-10,306;UBERON:0001869,8.13e-09,32;UBERON:0003077,9.15e-09,72;UBERON:0007285,9.15e-09,72;UBERON:0003914,1.41e-08,117;UBERON:0007524,1.90e-08,73;UBERON:0003528,2.00e-08,34;UBERON:0002020,2.00e-08,34;UBERON:0002329,2.52e-08,71;UBERON:0003059,2.52e-08,71;UBERON:0007282,2.52e-08,71;UBERON:0004290,2.52e-08,71;UBERON:0009618,2.52e-08,71;UBERON:0001637,6.89e-08,42;UBERON:0003509,6.89e-08,42;UBERON:0004572,6.89e-08,42;UBERON:0004111,8.06e-08,240;UBERON:0001893,8.49e-08,34;UBERON:0002791,1.04e-07,32;UBERON:0007500,1.32e-07,59;UBERON:0001981,1.32e-07,59;UBERON:0004537,1.32e-07,59;UBERON:0006965,1.32e-07,59;UBERON:0000486,4.41e-07,83;UBERON:0000956,7.37e-07,25;UBERON:0000203,7.37e-07,25;UBERON:0001134,7.91e-07,62;UBERON:0002036,7.91e-07,62;UBERON:0003082,7.91e-07,62 | |||
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| ||
|short_description=p3@MEA1 | |short_description=p3@MEA1 | ||
}} | }} |
Latest revision as of 21:09, 18 September 2015
Short description: | p3@MEA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MEA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_uc010jyc.1_5end |
EntrezGene: | MEA1 |
HGNC: | 6986 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 8.27e-09 | 32 |
muscle cell | 1.38e-08 | 55 |
electrically responsive cell | 2.11e-08 | 61 |
electrically active cell | 2.11e-08 | 61 |
muscle precursor cell | 4.12e-08 | 58 |
myoblast | 4.12e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.12e-08 | 58 |
smooth muscle cell | 1.54e-07 | 43 |
smooth muscle myoblast | 1.54e-07 | 43 |
mesodermal cell | 5.30e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
tube | 1.73e-12 | 192 |
cell layer | 1.52e-10 | 309 |
epithelial vesicle | 1.53e-10 | 78 |
epithelium | 1.86e-10 | 306 |
cerebral hemisphere | 8.13e-09 | 32 |
paraxial mesoderm | 9.15e-09 | 72 |
presumptive paraxial mesoderm | 9.15e-09 | 72 |
epithelial tube | 1.41e-08 | 117 |
dense mesenchyme tissue | 1.90e-08 | 73 |
brain grey matter | 2.00e-08 | 34 |
gray matter | 2.00e-08 | 34 |
somite | 2.52e-08 | 71 |
presomitic mesoderm | 2.52e-08 | 71 |
presumptive segmental plate | 2.52e-08 | 71 |
dermomyotome | 2.52e-08 | 71 |
trunk paraxial mesoderm | 2.52e-08 | 71 |
artery | 6.89e-08 | 42 |
arterial blood vessel | 6.89e-08 | 42 |
arterial system | 6.89e-08 | 42 |
anatomical conduit | 8.06e-08 | 240 |
telencephalon | 8.49e-08 | 34 |
regional part of telencephalon | 1.04e-07 | 32 |
epithelial tube open at both ends | 1.32e-07 | 59 |
blood vessel | 1.32e-07 | 59 |
blood vasculature | 1.32e-07 | 59 |
vascular cord | 1.32e-07 | 59 |
multilaminar epithelium | 4.41e-07 | 83 |
cerebral cortex | 7.37e-07 | 25 |
pallium | 7.37e-07 | 25 |
skeletal muscle tissue | 7.91e-07 | 62 |
striated muscle tissue | 7.91e-07 | 62 |
myotome | 7.91e-07 | 62 |