UBERON:0002020

Name:	gray matter
Namespace:	FANTOM
Definition:	"Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
Xrefs:	Expandlinks: AEO:0000136 EHDAA2:0003136 EHDAA2:0004658 FMA:67242 [ 200px-Spinal_nerve.svg.png] MA:0001112 ncithesaurus:Gray_Matter OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA TAO:0002197 ZFA:0001681
Synonyms:	"gray mater" RELATED [ZFA:0001681] "gray matter" EXACT [] "grey matter" EXACT [] "grey substance" EXACT [] "neuronal grey matter" EXACT [EHDAA2:0004658] "substantia grisea" EXACT [FMA:67242, FMA:TA]
Alt_id:	UBERON:FMA_67242-MA_0001112
Subset:	uberon_slim vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0011215(central nervous system cell part cluster)
part_of:	UBERON:0001017(central nervous system)

Children

is a:	UBERON:0002315 (gray matter of spinal cord),UBERON:0003528 (brain grey matter),UBERON:0007245 (nuclear complex of neuraxis)
part of:	UBERON:0016548 (central nervous system gray matter layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10031-101E4 (temporal lobe, adult, pool1)
• 10032-101E5 (postcentral gyrus, adult, pool1)
• 10034-101E7 (parietal lobe, adult, pool1)
• 10036-101E9 (occipital pole, adult, pool1)
• 10037-101F1 (nucleus accumbens, adult, pool1)
• 10039-101F3 (insula, adult, pool1)
• 10040-101F4 (frontal lobe, adult, pool1)
• 10071-101I8 (duodenum, fetal, donor1)
• 10072-101I9 (parietal lobe, fetal, donor1)
• 10073-102A1 (occipital lobe, fetal, donor1)

... further results Mouse (Mus musculus)

• 10031-101E4 (temporal lobe, adult, pool1)
• 10032-101E5 (postcentral gyrus, adult, pool1)
• 10034-101E7 (parietal lobe, adult, pool1)
• 10036-101E9 (occipital pole, adult, pool1)
• 10037-101F1 (nucleus accumbens, adult, pool1)
• 10039-101F3 (insula, adult, pool1)
• 10040-101F4 (frontal lobe, adult, pool1)
• 10071-101I8 (duodenum, fetal, donor1)
• 10072-101I9 (parietal lobe, fetal, donor1)
• 10073-102A1 (occipital lobe, fetal, donor1)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002020 (gray matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
2.77e-120	FFCP PHASE2:Hg19::chr11:49582389..49582417,+	p1@ENST00000527477, p1@ENST00000530858
2.77e-120	FFCP PHASE1:Hg19::chr11:49582389..49582417,+	p1@ENST00000527477, p1@ENST00000530858
3.69e-119	FFCP PHASE2:Hg19::chr14:24047743..24047754,-	p12@JPH4
3.69e-119	FFCP PHASE1:Hg19::chr14:24047743..24047754,-	p12@JPH4
3.97e-118	FFCP PHASE2:Hg19::chr12:11652664..11652681,+	p@chr12:11652664..11652681, +
3.97e-118	FFCP PHASE1:Hg19::chr12:11652664..11652681,+	p@chr12:11652664..11652681, +
2.4e-117	FFCP PHASE1:Hg19::chr4:6474472..6474528,-	p6@PPP2R2C
2.4e-117	FFCP PHASE2:Hg19::chr4:6474472..6474528,-	p6@PPP2R2C
2.24e-116	FFCP PHASE1:Hg19::chr2:210444748..210444770,+	p20@MAP2
2.24e-116	FFCP PHASE2:Hg19::chr2:210444748..210444770,+	p20@MAP2
6.97e-116	FFCP PHASE1:Hg19::chr7:150748288..150748337,+	p1@ACCN3
6.97e-116	FFCP PHASE2:Hg19::chr7:150748288..150748337,+	p1@ACCN3
4.01e-115	FFCP PHASE2:Hg19::chr19:54462732..54462743,+	p@chr19:54462732..54462743, +
4.01e-115	FFCP PHASE1:Hg19::chr19:54462732..54462743,+	p@chr19:54462732..54462743, +
1.14e-114	FFCP PHASE1:Hg19::chr12:14133429..14133438,-	p3@GRIN2B
1.14e-114	FFCP PHASE2:Hg19::chr12:14133429..14133438,-	p3@GRIN2B
3.44e-114	FFCP PHASE1:Hg19::chr19:55794942..55794982,+	p@chr19:55794942..55794982, +
3.44e-114	FFCP PHASE2:Hg19::chr19:55794942..55794982,+	p@chr19:55794942..55794982, +
4.09e-114	FFCP PHASE1:Hg19::chr2:115200192..115200244,+	p3@DPP10
4.09e-114	FFCP PHASE2:Hg19::chr2:115200192..115200244,+	p3@DPP10
5.07e-114	FFCP PHASE1:Hg19::chr19:54462276..54462325,+	p@chr19:54462276..54462325, +
5.07e-114	FFCP PHASE2:Hg19::chr19:54462276..54462325,+	p@chr19:54462276..54462325, +
1.45e-113	FFCP PHASE2:Hg19::chr16:24267508..24267525,+	p4@CACNG3
1.45e-113	FFCP PHASE1:Hg19::chr16:24267508..24267525,+	p4@CACNG3
2.01e-113	FFCP PHASE2:Hg19::chr20:1975321..1975338,-	p3@PDYN
2.01e-113	FFCP PHASE1:Hg19::chr20:1975321..1975338,-	p3@PDYN
9.5e-113	FFCP PHASE2:Hg19::chr5:160975135..160975218,-	p3@GABRB2
9.5e-113	FFCP PHASE1:Hg19::chr5:160975135..160975218,-	p3@GABRB2
1.47e-112	FFCP PHASE2:Hg19::chr11:133402367..133402378,-	p8@OPCML
1.47e-112	FFCP PHASE1:Hg19::chr11:133402367..133402378,-	p8@OPCML
2.02e-112	FFCP PHASE1:Hg19::chr12:14134636..14134651,-	p@chr12:14134636..14134651, -
2.02e-112	FFCP PHASE2:Hg19::chr12:14134636..14134651,-	p@chr12:14134636..14134651, -
4.68e-112	FFCP PHASE2:Hg19::chr4:6474536..6474563,-	p9@PPP2R2C
4.68e-112	FFCP PHASE1:Hg19::chr4:6474536..6474563,-	p9@PPP2R2C
2.32e-111	FFCP PHASE2:Hg19::chr18:55019840..55019850,+	p5@ST8SIA3
2.32e-111	FFCP PHASE1:Hg19::chr18:55019840..55019850,+	p5@ST8SIA3
2.51e-111	FFCP PHASE1:Hg19::chr19:54462535..54462548,+	p@chr19:54462535..54462548, +
2.51e-111	FFCP PHASE2:Hg19::chr19:54462535..54462548,+	p@chr19:54462535..54462548, +
4.73e-111	FFCP PHASE1:Hg19::chr11:133402410..133402434,-	p5@OPCML
4.73e-111	FFCP PHASE2:Hg19::chr11:133402410..133402434,-	p5@OPCML
8.62e-111	FFCP PHASE2:Hg19::chr5:80255907..80255942,+	p@chr5:80255907..80255942, +
8.62e-111	FFCP PHASE1:Hg19::chr5:80255907..80255942,+	p@chr5:80255907..80255942, +
2.43e-110	FFCP PHASE1:Hg19::chr6:62390886..62390903,-	p1@ENST00000511849
2.43e-110	FFCP PHASE2:Hg19::chr6:62390886..62390903,-	p1@ENST00000511849
3.36e-110	FFCP PHASE2:Hg19::chr6:108487289..108487302,+	p1@NR2E1
3.36e-110	FFCP PHASE1:Hg19::chr6:108487289..108487302,+	p1@NR2E1
5.09e-110	FFCP PHASE1:Hg19::chr9:112629512..112629528,+	p7@PALM2
5.09e-110	FFCP PHASE2:Hg19::chr9:112629512..112629528,+	p7@PALM2
8.14e-110	FFCP PHASE1:Hg19::chrX:152939089..152939119,-	p2@PNCK
8.14e-110	FFCP PHASE2:Hg19::chrX:152939089..152939119,-	p2@PNCK
3.28e-109	FFCP PHASE2:Hg19::chr5:27038708..27038730,-	p2@CDH9
3.28e-109	FFCP PHASE1:Hg19::chr5:27038708..27038730,-	p2@CDH9
8.01e-109	FFCP PHASE2:Hg19::chr19:54462010..54462060,+	p@chr19:54462010..54462060, +
8.01e-109	FFCP PHASE1:Hg19::chr19:54462010..54462060,+	p@chr19:54462010..54462060, +
8.43e-109	FFCP PHASE1:Hg19::chr9:112629781..112629806,+	p14@PALM2-AKAP2
8.43e-109	FFCP PHASE2:Hg19::chr9:112629781..112629806,+	p14@PALM2-AKAP2
1.04e-108	FFCP PHASE1:Hg19::chr15:80735246..80735321,+	p3@ARNT2
1.04e-108	FFCP PHASE2:Hg19::chr15:80735246..80735321,+	p3@ARNT2
1.61e-108	FFCP PHASE2:Hg19::chr11:89867681..89867695,+	p2@NAALAD2
1.61e-108	FFCP PHASE1:Hg19::chr11:89867681..89867695,+	p2@NAALAD2
2.01e-108	FFCP PHASE1:Hg19::chr1:70033108..70033121,+	p8@LRRC7
2.01e-108	FFCP PHASE2:Hg19::chr1:70033108..70033121,+	p8@LRRC7
2.37e-108	FFCP PHASE2:Hg19::chr11:132982177..132982181,-	p@chr11:132982177..132982181, -
2.37e-108	FFCP PHASE1:Hg19::chr11:132982177..132982181,-	p@chr11:132982177..132982181, -
3.44e-108	FFCP PHASE2:Hg19::chr6:155538093..155538109,+	p2@TIAM2
3.44e-108	FFCP PHASE1:Hg19::chr6:155538093..155538109,+	p2@TIAM2
3.59e-108	FFCP PHASE1:Hg19::chr19:54462560..54462571,+	p@chr19:54462560..54462571, +
3.59e-108	FFCP PHASE2:Hg19::chr19:54462560..54462571,+	p@chr19:54462560..54462571, +
4.72e-108	FFCP PHASE1:Hg19::chr17:77090555..77090587,-	p@chr17:77090555..77090587, -
4.72e-108	FFCP PHASE2:Hg19::chr17:77090555..77090587,-	p@chr17:77090555..77090587, -
8.45e-108	FFCP PHASE2:Hg19::chr2:8595510..8595529,-	p@chr2:8595510..8595529, -
8.45e-108	FFCP PHASE1:Hg19::chr2:8595510..8595529,-	p@chr2:8595510..8595529, -
1.02e-107	FFCP PHASE1:Hg19::chr20:1975298..1975316,-	p2@PDYN
1.02e-107	FFCP PHASE2:Hg19::chr20:1975298..1975316,-	p2@PDYN
1.13e-107	FFCP PHASE2:Hg19::chr4:46392290..46392324,-	p13@GABRA2
1.13e-107	FFCP PHASE1:Hg19::chr4:46392290..46392324,-	p13@GABRA2
1.19e-107	FFCP PHASE2:Hg19::chr16:56390359..56390376,+	p@chr16:56390359..56390376, +
1.19e-107	FFCP PHASE1:Hg19::chr16:56390359..56390376,+	p@chr16:56390359..56390376, +
1.24e-107	FFCP PHASE1:Hg19::chr1:156119798..156119834,+	p5@SEMA4A
1.24e-107	FFCP PHASE2:Hg19::chr1:156119798..156119834,+	p5@SEMA4A
1.31e-107	FFCP PHASE1:Hg19::chr7:54609764..54609789,+	p8@VSTM2A
1.31e-107	FFCP PHASE2:Hg19::chr7:54609764..54609789,+	p8@VSTM2A
1.91e-107	FFCP PHASE2:Hg19::chr12:14134689..14134704,-	p@chr12:14134689..14134704, -
1.91e-107	FFCP PHASE1:Hg19::chr12:14134689..14134704,-	p@chr12:14134689..14134704, -
2.32e-107	FFCP PHASE1:Hg19::chr12:14133820..14133830,-	p@chr12:14133820..14133830, -
2.32e-107	FFCP PHASE2:Hg19::chr12:14133820..14133830,-	p@chr12:14133820..14133830, -
2.8e-107	FFCP PHASE2:Hg19::chr12:57957885..57957898,+	p@chr12:57957885..57957898, +
2.8e-107	FFCP PHASE1:Hg19::chr12:57957885..57957898,+	p@chr12:57957885..57957898, +
3.92e-107	FFCP PHASE2:Hg19::chr6:101847075..101847092,+	p5@GRIK2
3.92e-107	FFCP PHASE1:Hg19::chr6:101847075..101847092,+	p5@GRIK2
4.4e-107	FFCP PHASE2:Hg19::chr1:2005182..2005194,+	p8@PRKCZ
4.4e-107	FFCP PHASE1:Hg19::chr1:2005182..2005194,+	p8@PRKCZ
8.12e-107	FFCP PHASE2:Hg19::chr20:34743645..34743687,-	p1@ENST00000441208, p1@uc002xfa.1
8.12e-107	FFCP PHASE1:Hg19::chr20:34743645..34743687,-	p1@ENST00000441208, p1@uc002xfa.1
8.19e-107	FFCP PHASE1:Hg19::chr2:196990526..196990535,-	p@chr2:196990526..196990535, -
8.19e-107	FFCP PHASE2:Hg19::chr2:196990526..196990535,-	p@chr2:196990526..196990535, -
8.66e-107	FFCP PHASE2:Hg19::chrX:13835312..13835321,-	p9@GPM6B
8.66e-107	FFCP PHASE1:Hg19::chrX:13835312..13835321,-	p9@GPM6B
1.08e-106	FFCP PHASE2:Hg19::chr16:24267634..24267671,+	p2@CACNG3
1.08e-106	FFCP PHASE1:Hg19::chr16:24267634..24267671,+	p2@CACNG3

Showing 1 to 100 of 100 entries

Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.