FFCP PHASE1:Hg19::chrX:48433596..48433617,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5935 | |EntrezGene=5935 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9900 | |HGNC=9900 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=218bp_to_ENST00000491236_5end | |association_with_transcript=218bp_to_ENST00000491236_5end | ||
|cluster_id=chrX:48433596..48433617,+ | |||
|description=CAGE_peak_6_at_RBM3_5end | |description=CAGE_peak_6_at_RBM3_5end | ||
|id=chrX:48433596..48433617,+ | |id=chrX:48433596..48433617,+ | ||
|ontology_enrichment_celltype=CL:0000034!1.15e-15!444;CL:0000723!1.81e-15!436;CL:0002057!2.90e-15!42;CL:0000860!9.36e-15!45;CL:0000048!1.51e-14!430;CL:0002087!1.40e-12!119;CL:0002031!3.18e-12!124;CL:0000738!3.76e-11!140;CL:0000012!2.15e-10!682;CL:0000134!3.08e-10!358;CL:0002371!3.81e-10!591;CL:0000548!4.71e-10!679;CL:0000004!4.71e-10!679;CL:0000255!4.71e-10!679;CL:0002320!9.61e-10!365;CL:0000003!9.81e-10!722;CL:0000037!1.17e-09!172;CL:0000566!1.17e-09!172;CL:0002032!1.38e-09!165;CL:0000837!1.38e-09!165;CL:0000144!3.46e-09!625;CL:0002009!5.48e-09!65;CL:0002194!1.46e-08!63;CL:0000576!1.46e-08!63;CL:0000040!1.46e-08!63;CL:0000559!1.46e-08!63;CL:0000988!2.53e-08!182;CL:0000219!3.45e-08!390;CL:0000557!7.88e-08!71;CL:0000839!1.96e-07!70;CL:0000063!3.21e-07!578 | |ontology_enrichment_celltype=CL:0000034!1.15e-15!444;CL:0000723!1.81e-15!436;CL:0002057!2.90e-15!42;CL:0000860!9.36e-15!45;CL:0000048!1.51e-14!430;CL:0002087!1.40e-12!119;CL:0002031!3.18e-12!124;CL:0000738!3.76e-11!140;CL:0000012!2.15e-10!682;CL:0000134!3.08e-10!358;CL:0002371!3.81e-10!591;CL:0000548!4.71e-10!679;CL:0000004!4.71e-10!679;CL:0000255!4.71e-10!679;CL:0002320!9.61e-10!365;CL:0000003!9.81e-10!722;CL:0000037!1.17e-09!172;CL:0000566!1.17e-09!172;CL:0002032!1.38e-09!165;CL:0000837!1.38e-09!165;CL:0000144!3.46e-09!625;CL:0002009!5.48e-09!65;CL:0002194!1.46e-08!63;CL:0000576!1.46e-08!63;CL:0000040!1.46e-08!63;CL:0000559!1.46e-08!63;CL:0000988!2.53e-08!182;CL:0000219!3.45e-08!390;CL:0000557!7.88e-08!71;CL:0000839!1.96e-07!70;CL:0000063!3.21e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.58e-14;33!CL:0002057;1.58e-14;33!CL:0000473;5.44e-11;39!CL:0000234;5.44e-11;39!CL:0000576;3.16e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.69e-20,42;CL:0002057,4.69e-20,42;CL:0000473,1.24e-18,48;CL:0000234,1.24e-18,48;CL:0002087,2.54e-15,115;CL:0002031,8.36e-14,120;CL:0002009,1.61e-13,61;CL:0000738,1.70e-13,136;CL:0002194,2.15e-13,59;CL:0000576,2.15e-13,59;CL:0000040,2.15e-13,59;CL:0000559,2.15e-13,59;CL:0000034,7.59e-12,441;CL:0000723,1.88e-11,433;CL:0000557,2.65e-11,67;CL:0000839,8.14e-11,66;CL:0000037,1.54e-10,168;CL:0000766,1.63e-10,72;CL:0000048,1.71e-10,427;CL:0002032,1.85e-10,161;CL:0000837,1.85e-10,161;CL:0000988,4.36e-09,177;CL:0000134,1.28e-08,354;CL:0002320,6.22e-08,361;CL:0000219,2.95e-07,386;CL:0000763,3.10e-07,108;CL:0000049,3.10e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;5.00e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!4.07e-10!375;UBERON:0002204!1.82e-09!167;UBERON:0004765!1.76e-07!101;UBERON:0001434!1.76e-07!101;UBERON:0002371!8.07e-07!80;UBERON:0001474!9.94e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.11e-10,76;UBERON:0001474,2.59e-09,82;UBERON:0002405,4.02e-08,93;UBERON:0002384,4.75e-08,371;UBERON:0002204,7.69e-08,167;UBERON:0004765,1.56e-07,90;UBERON:0001434,1.73e-07,100;UBERON:0002390,2.73e-07,98;UBERON:0003061,2.73e-07,98 | |||
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| ||
|short_description=p6@RBM3 | |short_description=p6@RBM3 | ||
}} | }} |
Latest revision as of 19:23, 15 September 2015
Short description: | p6@RBM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RBM3_5end |
Coexpression cluster: | NA |
Association with transcript: | 218bp_to_ENST00000491236_5end |
EntrezGene: | RBM3 |
HGNC: | 9900 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.69e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.69e-20 | 42 |
defensive cell | 1.24e-18 | 48 |
phagocyte | 1.24e-18 | 48 |
nongranular leukocyte | 2.54e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 8.36e-14 | 120 |
macrophage dendritic cell progenitor | 1.61e-13 | 61 |
leukocyte | 1.70e-13 | 136 |
monopoietic cell | 2.15e-13 | 59 |
monocyte | 2.15e-13 | 59 |
monoblast | 2.15e-13 | 59 |
promonocyte | 2.15e-13 | 59 |
stem cell | 7.59e-12 | 441 |
somatic stem cell | 1.88e-11 | 433 |
granulocyte monocyte progenitor cell | 2.65e-11 | 67 |
myeloid lineage restricted progenitor cell | 8.14e-11 | 66 |
hematopoietic stem cell | 1.54e-10 | 168 |
myeloid leukocyte | 1.63e-10 | 72 |
multi fate stem cell | 1.71e-10 | 427 |
hematopoietic oligopotent progenitor cell | 1.85e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.85e-10 | 161 |
hematopoietic cell | 4.36e-09 | 177 |
mesenchymal cell | 1.28e-08 | 354 |
connective tissue cell | 6.22e-08 | 361 |
motile cell | 2.95e-07 | 386 |
myeloid cell | 3.10e-07 | 108 |
common myeloid progenitor | 3.10e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.11e-10 | 76 |
bone element | 2.59e-09 | 82 |
immune system | 4.02e-08 | 93 |
connective tissue | 4.75e-08 | 371 |
musculoskeletal system | 7.69e-08 | 167 |
skeletal element | 1.56e-07 | 90 |
skeletal system | 1.73e-07 | 100 |
hematopoietic system | 2.73e-07 | 98 |
blood island | 2.73e-07 | 98 |