FFCP PHASE1:Hg19::chr15:75940372..75940444,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:75940372..75940444,+
|short_description=p4@SNX33
|description=CAGE_peak_4_at_SNX33_5end
|association_with_transcript=125bp_to_ENST00000308527_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=257364 | |EntrezGene=257364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28468 | |HGNC=28468 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WV41 | |UniProt=Q8WV41 | ||
|association_with_transcript=125bp_to_ENST00000308527_5end | |||
|cluster_id=chr15:75940372..75940444,+ | |||
|description=CAGE_peak_4_at_SNX33_5end | |||
|id=chr15:75940372..75940444,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.33e-20!180;CL:0002321!1.58e-12!248;CL:0000220!3.59e-12!246;CL:0000057!1.90e-11!75;CL:0000222!4.67e-08!119;CL:0000192!2.19e-07!42;CL:0000514!2.19e-07!42;CL:0000183!2.72e-07!59;CL:0000680!5.72e-07!57;CL:0000056!5.72e-07!57;CL:0000355!5.72e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.19e-09;32!CL:0000192;6.28e-09;43!CL:0002595;7.39e-07;5!CL:0000077;8.90e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,3.90e-11,43;CL:0000514,3.90e-11,43;CL:0000359,2.78e-09,32;CL:0000393,3.28e-09,61;CL:0000211,3.28e-09,61;CL:0000680,6.67e-09,58;CL:0000056,6.67e-09,58;CL:0000355,6.67e-09,58;CL:0000187,1.58e-08,55;CL:0000057,3.34e-08,76;CL:0000222,8.64e-08,121;CL:0002595,2.87e-07,5;CL:0000077,4.80e-07,19;CL:0002321,6.18e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;6.28e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.11e-12!365;UBERON:0003102!4.80e-10!95;UBERON:0000914!6.89e-10!83;UBERON:0002329!6.89e-10!83;UBERON:0003077!6.89e-10!83;UBERON:0003059!6.89e-10!83;UBERON:0007282!6.89e-10!83;UBERON:0009618!6.89e-10!83;UBERON:0007285!6.89e-10!83;UBERON:0000486!2.12e-09!82;UBERON:0002100!2.45e-09!216;UBERON:0000481!5.89e-09!347;UBERON:0005256!1.06e-08!143;UBERON:0000468!1.30e-08!659;UBERON:0004290!2.77e-08!70;UBERON:0002385!2.15e-07!63;UBERON:0001015!2.15e-07!63;UBERON:0000383!2.15e-07!63;UBERON:0003104!2.56e-07!238;UBERON:0009142!2.56e-07!238;UBERON:0001134!2.74e-07!61;UBERON:0002036!2.74e-07!61;UBERON:0003082!2.74e-07!61;UBERON:0001637!4.09e-07!42;UBERON:0003509!4.09e-07!42;UBERON:0004572!4.09e-07!42;UBERON:0000119!4.43e-07!312;UBERON:0004573!8.98e-07!33;UBERON:0004571!8.98e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;7.39e-07;5!UBERON:0001533;7.39e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,2.40e-09,71;UBERON:0003059,2.40e-09,71;UBERON:0007282,2.40e-09,71;UBERON:0004290,2.40e-09,71;UBERON:0009618,2.40e-09,71;UBERON:0000486,4.30e-09,83;UBERON:0003077,4.44e-09,72;UBERON:0007285,4.44e-09,72;UBERON:0002385,7.36e-09,64;UBERON:0001015,7.36e-09,64;UBERON:0000383,7.36e-09,64;UBERON:0007524,8.07e-09,73;UBERON:0001134,1.18e-08,62;UBERON:0002036,1.18e-08,62;UBERON:0003082,1.18e-08,62;UBERON:0007503,1.21e-07,78;UBERON:0003834,2.87e-07,5;UBERON:0001533,2.87e-07,5;UBERON:0004573,4.55e-07,33;UBERON:0004571,4.55e-07,33 | |||
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| ||
|short_description=p4@SNX33 | |||
}} | }} |
Latest revision as of 04:12, 19 September 2015
Short description: | p4@SNX33 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SNX33_5end |
Coexpression cluster: | NA |
Association with transcript: | 125bp_to_ENST00000308527_5end |
EntrezGene: | SNX33 |
HGNC: | 28468 |
UniProt: | Q8WV41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 3.90e-11 | 43 |
smooth muscle myoblast | 3.90e-11 | 43 |
vascular associated smooth muscle cell | 2.78e-09 | 32 |
electrically responsive cell | 3.28e-09 | 61 |
electrically active cell | 3.28e-09 | 61 |
muscle precursor cell | 6.67e-09 | 58 |
myoblast | 6.67e-09 | 58 |
multi-potent skeletal muscle stem cell | 6.67e-09 | 58 |
muscle cell | 1.58e-08 | 55 |
fibroblast | 3.34e-08 | 76 |
mesodermal cell | 8.64e-08 | 121 |
smooth muscle cell of the subclavian artery | 2.87e-07 | 5 |
mesothelial cell | 4.80e-07 | 19 |
embryonic cell | 6.18e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
somite | 2.40e-09 | 71 |
presomitic mesoderm | 2.40e-09 | 71 |
presumptive segmental plate | 2.40e-09 | 71 |
dermomyotome | 2.40e-09 | 71 |
trunk paraxial mesoderm | 2.40e-09 | 71 |
multilaminar epithelium | 4.30e-09 | 83 |
paraxial mesoderm | 4.44e-09 | 72 |
presumptive paraxial mesoderm | 4.44e-09 | 72 |
muscle tissue | 7.36e-09 | 64 |
musculature | 7.36e-09 | 64 |
musculature of body | 7.36e-09 | 64 |
dense mesenchyme tissue | 8.07e-09 | 73 |
skeletal muscle tissue | 1.18e-08 | 62 |
striated muscle tissue | 1.18e-08 | 62 |
myotome | 1.18e-08 | 62 |
epithelial vesicle | 1.21e-07 | 78 |
thoracic segment blood vessel | 2.87e-07 | 5 |
subclavian artery | 2.87e-07 | 5 |
systemic artery | 4.55e-07 | 33 |
systemic arterial system | 4.55e-07 | 33 |