FFCP PHASE1:Hg19::chr9:131133622..131133661,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81605 | |EntrezGene=81605 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28378 | |HGNC=28378 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T4A9 | |UniProt=Q5T4A9 | ||
|association_with_transcript=0bp_to_ENST00000372847,ENST00000372850,ENST00000470840_5end | |association_with_transcript=0bp_to_ENST00000372847,ENST00000372850,ENST00000470840_5end | ||
|cluster_id=chr9:131133622..131133661,+ | |||
|coexpression_cluster_id=C895 | |||
|description=CAGE_peak_1_at_URM1_5end | |description=CAGE_peak_1_at_URM1_5end | ||
|id=chr9:131133622..131133661,+ | |id=chr9:131133622..131133661,+ | ||
|ontology_enrichment_celltype=CL:0000012!4.48e-27!682;CL:0000548!7.55e-27!679;CL:0000004!7.55e-27!679;CL:0000255!7.55e-27!679;CL:0000144!2.33e-26!625;CL:0002371!8.86e-25!591;CL:0000003!2.75e-21!722;CL:0000222!4.25e-19!119;CL:0000220!5.24e-17!246;CL:0002321!1.55e-16!248;CL:0000055!3.12e-15!180;CL:0000115!2.06e-12!35;CL:0002078!7.34e-12!44;CL:0000213!9.10e-12!57;CL:0000215!9.10e-12!57;CL:0000063!1.87e-10!578;CL:0000183!4.18e-10!59;CL:0002139!5.71e-10!24;CL:0000071!3.04e-08!18;CL:0002546!3.04e-08!18;CL:0000187!4.29e-08!54;CL:0000680!4.90e-08!57;CL:0000056!4.90e-08!57;CL:0000355!4.90e-08!57;CL:0000066!6.60e-08!254;CL:0000192!6.68e-08!42;CL:0000514!6.68e-08!42;CL:0000393!2.49e-07!60;CL:0000211!2.49e-07!60 | |ontology_enrichment_celltype=CL:0000012!4.48e-27!682;CL:0000548!7.55e-27!679;CL:0000004!7.55e-27!679;CL:0000255!7.55e-27!679;CL:0000144!2.33e-26!625;CL:0002371!8.86e-25!591;CL:0000003!2.75e-21!722;CL:0000222!4.25e-19!119;CL:0000220!5.24e-17!246;CL:0002321!1.55e-16!248;CL:0000055!3.12e-15!180;CL:0000115!2.06e-12!35;CL:0002078!7.34e-12!44;CL:0000213!9.10e-12!57;CL:0000215!9.10e-12!57;CL:0000063!1.87e-10!578;CL:0000183!4.18e-10!59;CL:0002139!5.71e-10!24;CL:0000071!3.04e-08!18;CL:0002546!3.04e-08!18;CL:0000187!4.29e-08!54;CL:0000680!4.90e-08!57;CL:0000056!4.90e-08!57;CL:0000355!4.90e-08!57;CL:0000066!6.60e-08!254;CL:0000192!6.68e-08!42;CL:0000514!6.68e-08!42;CL:0000393!2.49e-07!60;CL:0000211!2.49e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000115;5.15e-11;36!CL:0002139;5.78e-10;24!CL:0002078;1.05e-08;45!CL:0000071;2.96e-08;18!CL:0000213;1.81e-07;58!CL:0000215;1.81e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.34e-19,121;CL:0002321,8.09e-17,250;CL:0000115,5.87e-13,36;CL:0002078,2.25e-12,45;CL:0000213,3.00e-12,58;CL:0000215,3.00e-12,58;CL:0002139,5.71e-10,24;CL:0000071,3.04e-08,18;CL:0002546,3.04e-08,18;CL:0000066,5.72e-08,253;CL:0000187,6.76e-08,55;CL:0000680,7.55e-08,58;CL:0000056,7.55e-08,58;CL:0000355,7.55e-08,58;CL:0000192,1.15e-07,43;CL:0000514,1.15e-07,43;CL:0000393,3.64e-07,61;CL:0000211,3.64e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002546;2.96e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!7.31e-13!79;UBERON:0007798!7.31e-13!79;UBERON:0000055!1.49e-11!69;UBERON:0004872!2.41e-11!84;UBERON:0003914!3.20e-10!118;UBERON:0000490!1.11e-09!138;UBERON:0001981!2.03e-09!60;UBERON:0007500!2.03e-09!60;UBERON:0004537!2.03e-09!60;UBERON:0006965!2.03e-09!60;UBERON:0001637!1.38e-08!42;UBERON:0003509!1.38e-08!42;UBERON:0004572!1.38e-08!42;UBERON:0000487!1.54e-08!22;UBERON:0006914!1.87e-08!25;UBERON:0004535!2.09e-08!110;UBERON:0001986!3.04e-08!18;UBERON:0004638!3.04e-08!18;UBERON:0004852!3.04e-08!18;UBERON:0001009!3.89e-08!113;UBERON:0000914!5.11e-08!83;UBERON:0002329!5.11e-08!83;UBERON:0003077!5.11e-08!83;UBERON:0003059!5.11e-08!83;UBERON:0007282!5.11e-08!83;UBERON:0009618!5.11e-08!83;UBERON:0007285!5.11e-08!83;UBERON:0004290!6.19e-08!70;UBERON:0000486!2.49e-07!82;UBERON:0001134!3.76e-07!61;UBERON:0002036!3.76e-07!61;UBERON:0003082!3.76e-07!61 | |ontology_enrichment_uberon=UBERON:0002049!7.31e-13!79;UBERON:0007798!7.31e-13!79;UBERON:0000055!1.49e-11!69;UBERON:0004872!2.41e-11!84;UBERON:0003914!3.20e-10!118;UBERON:0000490!1.11e-09!138;UBERON:0001981!2.03e-09!60;UBERON:0007500!2.03e-09!60;UBERON:0004537!2.03e-09!60;UBERON:0006965!2.03e-09!60;UBERON:0001637!1.38e-08!42;UBERON:0003509!1.38e-08!42;UBERON:0004572!1.38e-08!42;UBERON:0000487!1.54e-08!22;UBERON:0006914!1.87e-08!25;UBERON:0004535!2.09e-08!110;UBERON:0001986!3.04e-08!18;UBERON:0004638!3.04e-08!18;UBERON:0004852!3.04e-08!18;UBERON:0001009!3.89e-08!113;UBERON:0000914!5.11e-08!83;UBERON:0002329!5.11e-08!83;UBERON:0003077!5.11e-08!83;UBERON:0003059!5.11e-08!83;UBERON:0007282!5.11e-08!83;UBERON:0009618!5.11e-08!83;UBERON:0007285!5.11e-08!83;UBERON:0004290!6.19e-08!70;UBERON:0000486!2.49e-07!82;UBERON:0001134!3.76e-07!61;UBERON:0002036!3.76e-07!61;UBERON:0003082!3.76e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0000487;1.53e-08;22!UBERON:0006914;1.82e-08;25!UBERON:0004638;2.96e-08;18!UBERON:0001986;2.96e-08;18!UBERON:0004852;2.96e-08;18!UBERON:0000490;1.15e-07;33!UBERON:0003914;1.23e-07;74!UBERON:0007500;2.59e-07;56!UBERON:0001981;2.59e-07;56!UBERON:0004537;2.59e-07;56!UBERON:0000055;9.70e-07;65 | |||
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|short_description=p1@URM1 | |short_description=p1@URM1 | ||
}} | }} |
Latest revision as of 19:01, 15 September 2015
Short description: | p1@URM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_URM1_5end |
Coexpression cluster: | C895_Mesenchymal_Renal_Alveolar_Fibroblast_Pericytes_Trabecular_Osteoblast |
Association with transcript: | 0bp_to_ENST00000372847, ENST00000372850, ENST00000470840_5end |
EntrezGene: | URM1 |
HGNC: | 28378 |
UniProt: | Q5T4A9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.34e-19 | 121 |
embryonic cell | 8.09e-17 | 250 |
endothelial cell | 5.87e-13 | 36 |
meso-epithelial cell | 2.25e-12 | 45 |
lining cell | 3.00e-12 | 58 |
barrier cell | 3.00e-12 | 58 |
endothelial cell of vascular tree | 5.71e-10 | 24 |
blood vessel endothelial cell | 3.04e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.04e-08 | 18 |
epithelial cell | 5.72e-08 | 253 |
muscle cell | 6.76e-08 | 55 |
muscle precursor cell | 7.55e-08 | 58 |
myoblast | 7.55e-08 | 58 |
multi-potent skeletal muscle stem cell | 7.55e-08 | 58 |
smooth muscle cell | 1.15e-07 | 43 |
smooth muscle myoblast | 1.15e-07 | 43 |
electrically responsive cell | 3.64e-07 | 61 |
electrically active cell | 3.64e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.81e-13 | 78 |
vascular system | 1.81e-13 | 78 |
vessel | 3.63e-12 | 68 |
splanchnic layer of lateral plate mesoderm | 7.01e-12 | 83 |
unilaminar epithelium | 1.97e-10 | 148 |
epithelial tube | 2.35e-10 | 117 |
epithelial vesicle | 3.71e-10 | 78 |
epithelial tube open at both ends | 5.35e-10 | 59 |
blood vessel | 5.35e-10 | 59 |
blood vasculature | 5.35e-10 | 59 |
vascular cord | 5.35e-10 | 59 |
cardiovascular system | 8.81e-09 | 109 |
artery | 1.38e-08 | 42 |
arterial blood vessel | 1.38e-08 | 42 |
arterial system | 1.38e-08 | 42 |
simple squamous epithelium | 1.54e-08 | 22 |
circulatory system | 1.69e-08 | 112 |
squamous epithelium | 1.87e-08 | 25 |
blood vessel endothelium | 3.04e-08 | 18 |
endothelium | 3.04e-08 | 18 |
cardiovascular system endothelium | 3.04e-08 | 18 |
somite | 8.91e-08 | 71 |
presomitic mesoderm | 8.91e-08 | 71 |
presumptive segmental plate | 8.91e-08 | 71 |
dermomyotome | 8.91e-08 | 71 |
trunk paraxial mesoderm | 8.91e-08 | 71 |
dense mesenchyme tissue | 1.45e-07 | 73 |
paraxial mesoderm | 1.98e-07 | 72 |
presumptive paraxial mesoderm | 1.98e-07 | 72 |
multilaminar epithelium | 3.36e-07 | 83 |
skeletal muscle tissue | 5.43e-07 | 62 |
striated muscle tissue | 5.43e-07 | 62 |
myotome | 5.43e-07 | 62 |