FFCP PHASE1:Hg19::chr16:75498553..75498621,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:75498553..75498621,-
|short_description=p1@TMEM170A
|description=CAGE_peak_1_at_TMEM170A_5end
|association_with_transcript=0bp_to_ENST00000357613,NM_14525...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=124491 | |EntrezGene=124491 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29577 | |HGNC=29577 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WVE7 | |UniProt=Q8WVE7 | ||
|association_with_transcript=0bp_to_ENST00000357613,NM_145254,uc002fec.2,uc002fed.1,uc002fee.1_5end | |||
|cluster_id=chr16:75498553..75498621,- | |||
|coexpression_cluster_id=C3053 | |||
|description=CAGE_peak_1_at_TMEM170A_5end | |||
|id=chr16:75498553..75498621,- | |||
|ontology_enrichment_celltype=CL:0000738!1.22e-40!140;CL:0000037!3.37e-38!172;CL:0000566!3.37e-38!172;CL:0002032!3.51e-36!165;CL:0000837!3.51e-36!165;CL:0000988!3.99e-35!182;CL:0002087!3.05e-34!119;CL:0002031!2.47e-32!124;CL:0000766!2.65e-29!76;CL:0000763!5.35e-26!112;CL:0000049!5.35e-26!112;CL:0000557!3.09e-25!71;CL:0002009!4.42e-25!65;CL:0002057!1.34e-24!42;CL:0000860!1.53e-24!45;CL:0002194!1.59e-24!63;CL:0000576!1.59e-24!63;CL:0000040!1.59e-24!63;CL:0000559!1.59e-24!63;CL:0000839!3.18e-23!70;CL:0000542!2.65e-09!53;CL:0000051!2.65e-09!53;CL:0000838!4.10e-09!52;CL:0000094!9.55e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.58e-19;33!CL:0002057;1.58e-19;33!CL:0000473;6.63e-17;39!CL:0000234;6.63e-17;39!CL:0000576;4.60e-16;48!CL:0000766;2.37e-13;69!CL:0002087;5.86e-11;104!CL:0000738;3.97e-09;136!CL:0000763;5.01e-08;100!CL:0000988;1.09e-07;177!CL:0000094;9.18e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.97e-41,136;CL:0000037,2.22e-38,168;CL:0002032,2.28e-36,161;CL:0000837,2.28e-36,161;CL:0000988,2.00e-35,177;CL:0002087,1.16e-34,115;CL:0002031,1.11e-32,120;CL:0000766,4.53e-30,72;CL:0000763,2.71e-26,108;CL:0000049,2.71e-26,108;CL:0000557,6.36e-26,67;CL:0002009,7.24e-26,61;CL:0002194,2.53e-25,59;CL:0000576,2.53e-25,59;CL:0000040,2.53e-25,59;CL:0000559,2.53e-25,59;CL:0000473,3.78e-25,48;CL:0000234,3.78e-25,48;CL:0000860,1.34e-24,42;CL:0002057,1.34e-24,42;CL:0000839,7.66e-24,66;CL:0000542,2.65e-09,53;CL:0000051,2.65e-09,53;CL:0000838,4.10e-09,52;CL:0000094,9.55e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;4.20e-18;42!CL:0000049;1.19e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.58e-24!102;UBERON:0003061!3.58e-24!102;UBERON:0002193!1.67e-23!112;UBERON:0001474!1.03e-20!86;UBERON:0002371!1.95e-19!80;UBERON:0002405!3.65e-19!115;UBERON:0004765!3.13e-14!101;UBERON:0001434!3.13e-14!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.72e-24,98;UBERON:0003061,1.72e-24,98;UBERON:0002193,9.56e-24,108;UBERON:0001474,4.62e-21,82;UBERON:0002405,2.18e-20,93;UBERON:0002371,8.51e-20,76;UBERON:0004765,8.21e-16,90;UBERON:0001434,2.08e-12,100 | |||
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| ||
|short_description=p1@TMEM170A | |||
}} | }} |
Latest revision as of 21:45, 17 September 2015
Short description: | p1@TMEM170A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM170A_5end |
Coexpression cluster: | C3053_Eosinophils_Neutrophils_CD14_granulocyte_immature_CD8_Basophils |
Association with transcript: | 0bp_to_ENST00000357613, NM_145254, uc002fec.2, uc002fed.1, uc002fee.1_5end |
EntrezGene: | TMEM170A |
HGNC: | 29577 |
UniProt: | Q8WVE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.97e-41 | 136 |
hematopoietic stem cell | 2.22e-38 | 168 |
hematopoietic oligopotent progenitor cell | 2.28e-36 | 161 |
hematopoietic multipotent progenitor cell | 2.28e-36 | 161 |
hematopoietic cell | 2.00e-35 | 177 |
nongranular leukocyte | 1.16e-34 | 115 |
hematopoietic lineage restricted progenitor cell | 1.11e-32 | 120 |
myeloid leukocyte | 4.53e-30 | 72 |
myeloid cell | 2.71e-26 | 108 |
common myeloid progenitor | 2.71e-26 | 108 |
granulocyte monocyte progenitor cell | 6.36e-26 | 67 |
macrophage dendritic cell progenitor | 7.24e-26 | 61 |
monopoietic cell | 2.53e-25 | 59 |
monocyte | 2.53e-25 | 59 |
monoblast | 2.53e-25 | 59 |
promonocyte | 2.53e-25 | 59 |
defensive cell | 3.78e-25 | 48 |
phagocyte | 3.78e-25 | 48 |
classical monocyte | 1.34e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.34e-24 | 42 |
myeloid lineage restricted progenitor cell | 7.66e-24 | 66 |
lymphocyte | 2.65e-09 | 53 |
common lymphoid progenitor | 2.65e-09 | 53 |
lymphoid lineage restricted progenitor cell | 4.10e-09 | 52 |
granulocyte | 9.55e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.72e-24 | 98 |
blood island | 1.72e-24 | 98 |
hemolymphoid system | 9.56e-24 | 108 |
bone element | 4.62e-21 | 82 |
immune system | 2.18e-20 | 93 |
bone marrow | 8.51e-20 | 76 |
skeletal element | 8.21e-16 | 90 |
skeletal system | 2.08e-12 | 100 |