FFCP PHASE1:Hg19::chr10:73679250..73679255,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:73679250..73679255,- | |||
|coexpression_cluster_id=C1300 | |||
|description=CAGE_peak_at_chr10:73679250..73679255,- | |description=CAGE_peak_at_chr10:73679250..73679255,- | ||
|id=chr10:73679250..73679255,- | |id=chr10:73679250..73679255,- | ||
|ontology_enrichment_celltype=CL:0002076!5.41e-23!43;CL:0002202!9.63e-21!9;CL:0002632!9.63e-21!9;CL:0000244!2.50e-20!4;CL:0000731!2.50e-20!4;CL:0002368!4.19e-19!13;CL:0000223!3.85e-18!59;CL:0000068!1.18e-16!3;CL:0000069!1.18e-16!3;CL:0000307!1.18e-16!3;CL:0000377!1.18e-16!3;CL:0002328!1.53e-16!3;CL:0000066!9.77e-16!254;CL:0000240!4.77e-14!6;CL:0000311!4.77e-14!6;CL:0000079!4.77e-14!6;CL:0000237!4.77e-14!6;CL:0000036!4.77e-14!6;CL:0000357!4.77e-14!6;CL:0000114!4.77e-14!6;CL:0002159!1.61e-13!13;CL:0002327!6.60e-12!4;CL:0000362!1.64e-10!8;CL:0002251!2.30e-10!21;CL:0000312!5.94e-10!5;CL:0002077!1.78e-08!33;CL:0002621!2.13e-07!3 | |ontology_enrichment_celltype=CL:0002076!5.41e-23!43;CL:0002202!9.63e-21!9;CL:0002632!9.63e-21!9;CL:0000244!2.50e-20!4;CL:0000731!2.50e-20!4;CL:0002368!4.19e-19!13;CL:0000223!3.85e-18!59;CL:0000068!1.18e-16!3;CL:0000069!1.18e-16!3;CL:0000307!1.18e-16!3;CL:0000377!1.18e-16!3;CL:0002328!1.53e-16!3;CL:0000066!9.77e-16!254;CL:0000240!4.77e-14!6;CL:0000311!4.77e-14!6;CL:0000079!4.77e-14!6;CL:0000237!4.77e-14!6;CL:0000036!4.77e-14!6;CL:0000357!4.77e-14!6;CL:0000114!4.77e-14!6;CL:0002159!1.61e-13!13;CL:0002327!6.60e-12!4;CL:0000362!1.64e-10!8;CL:0002251!2.30e-10!21;CL:0000312!5.94e-10!5;CL:0002077!1.78e-08!33;CL:0002621!2.13e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002202;7.12e-57;9!CL:0002632;7.12e-57;9!CL:0002368;2.86e-53;13!CL:0000307;8.63e-44;3!CL:0002328;2.75e-43;3!CL:0000240;6.46e-22;6!CL:0000311;6.46e-22;6!CL:0000079;6.46e-22;6!CL:0000237;6.46e-22;6!CL:0002336;2.56e-15;1!CL:0002261;2.56e-15;1!CL:0002170;2.56e-15;1!CL:0002076;1.42e-14;42!CL:0000312;1.89e-12;5!CL:0002159;9.37e-10;14!CL:0000575;2.57e-08;2!CL:0000082;2.30e-07;19!CL:0000362;2.60e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,5.88e-57,9;CL:0002632,5.88e-57,9;CL:0002368,2.35e-53,13;CL:0000068,9.28e-44,3;CL:0000069,9.28e-44,3;CL:0000307,9.28e-44,3;CL:0000377,9.28e-44,3;CL:0002328,1.92e-43,3;CL:0000240,7.72e-22,6;CL:0000311,7.72e-22,6;CL:0000079,7.72e-22,6;CL:0000237,7.72e-22,6;CL:0000036,7.72e-22,6;CL:0000357,7.72e-22,6;CL:0000114,7.72e-22,6;CL:0002076,4.58e-21,42;CL:0002336,3.66e-15,1;CL:0002261,3.66e-15,1;CL:0002170,3.66e-15,1;CL:0000223,4.45e-15,58;CL:0000312,1.89e-12,5;CL:0002159,9.81e-10,14;CL:0000066,1.15e-09,253;CL:0000575,2.87e-08,2;CL:0000082,2.18e-07,19;CL:0000362,2.60e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;8.63e-44;3!CL:0000357;6.46e-22;6!CL:0000114;6.46e-22;6!CL:0000223;2.16e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004815!1.53e-16!3;UBERON:0002031!1.53e-16!3;UBERON:0000365!2.69e-16!5;UBERON:0005910!1.33e-13!6;UBERON:0007196!4.19e-13!14;UBERON:0001558!4.19e-13!14;UBERON:0002185!1.58e-12!4;UBERON:0001911!6.60e-12!4;UBERON:0005333!6.60e-12!4;UBERON:0008425!6.60e-12!4;UBERON:0005311!6.60e-12!4;UBERON:0003729!1.94e-09!5;UBERON:0000485!2.65e-09!9;UBERON:0001949!2.13e-07!3;UBERON:0003126!2.23e-07!7;UBERON:0001005!2.23e-07!7;UBERON:0004119!2.85e-07!169;UBERON:0000925!2.85e-07!169;UBERON:0006595!2.85e-07!169 | |ontology_enrichment_uberon=UBERON:0004815!1.53e-16!3;UBERON:0002031!1.53e-16!3;UBERON:0000365!2.69e-16!5;UBERON:0005910!1.33e-13!6;UBERON:0007196!4.19e-13!14;UBERON:0001558!4.19e-13!14;UBERON:0002185!1.58e-12!4;UBERON:0001911!6.60e-12!4;UBERON:0005333!6.60e-12!4;UBERON:0008425!6.60e-12!4;UBERON:0005311!6.60e-12!4;UBERON:0003729!1.94e-09!5;UBERON:0000485!2.65e-09!9;UBERON:0001949!2.13e-07!3;UBERON:0003126!2.23e-07!7;UBERON:0001005!2.23e-07!7;UBERON:0004119!2.85e-07!169;UBERON:0000925!2.85e-07!169;UBERON:0006595!2.85e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.75e-43;3!UBERON:0002031;2.75e-43;3!UBERON:0007196;4.07e-34;15!UBERON:0001558;4.07e-34;15!UBERON:0002185;2.68e-26;5!UBERON:0003126;3.31e-19;7!UBERON:0001005;3.31e-19;7!UBERON:0000485;5.40e-19;7!UBERON:0005178;4.36e-15;34!UBERON:0002224;4.36e-15;34!UBERON:0005181;1.76e-13;35!UBERON:0000072;5.78e-13;37!UBERON:0000065;1.13e-12;44!UBERON:0004802;2.30e-07;19!UBERON:0000115;2.30e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.92e-43,3;UBERON:0002031,1.92e-43,3;UBERON:0007196,3.63e-34,15;UBERON:0001558,3.63e-34,15;UBERON:0002185,2.16e-26,5;UBERON:0003126,3.41e-19,7;UBERON:0001005,3.41e-19,7;UBERON:0005178,5.53e-15,34;UBERON:0002224,5.53e-15,34;UBERON:0000485,5.66e-15,9;UBERON:0005181,1.51e-14,35;UBERON:0008947,2.22e-13,38;UBERON:0003258,2.22e-13,38;UBERON:0000065,1.51e-12,54;UBERON:0000072,9.11e-11,47;UBERON:0000915,1.05e-09,52;UBERON:0001004,5.14e-09,74;UBERON:0005157,1.55e-07,47;UBERON:0004802,2.18e-07,19;UBERON:0000115,2.18e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,5.12050061923025,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,4.49607013030478,3.31745608958382,1.01847289674383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.268675568108545,0.871901815541886,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,2.67986696238627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59799704358883,18.0981614394663,8.71127878890581,0,0.43050537267123,1.68471475667626,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.581207126840626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,5.12050061923025,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,4.49607013030478,3.31745608958382,1.01847289674383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.268675568108545,0.871901815541886,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,2.67986696238627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59799704358883,18.0981614394663,8.71127878890581,0,0.43050537267123,1.68471475667626,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.581207126840626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:73679250..73679255,- | |short_description=p@chr10:73679250..73679255,- | ||
}} | }} |
Latest revision as of 15:22, 23 July 2015
Short description: | p@chr10:73679250..73679255, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:73679250..73679255, - |
Coexpression cluster: | C1300_Tracheal_Bronchial_Small_Keratinocyte_Mammary_bronchial_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 5.88e-57 | 9 |
epithelial cell of lower respiratory tract | 5.88e-57 | 9 |
respiratory epithelial cell | 2.35e-53 | 13 |
duct epithelial cell | 9.28e-44 | 3 |
branched duct epithelial cell | 9.28e-44 | 3 |
tracheal epithelial cell | 9.28e-44 | 3 |
tracheoblast | 9.28e-44 | 3 |
bronchial epithelial cell | 1.92e-43 | 3 |
stratified squamous epithelial cell | 7.72e-22 | 6 |
keratin accumulating cell | 7.72e-22 | 6 |
stratified epithelial cell | 7.72e-22 | 6 |
keratinizing barrier epithelial cell | 7.72e-22 | 6 |
epithelial fate stem cell | 7.72e-22 | 6 |
stratified epithelial stem cell | 7.72e-22 | 6 |
surface ectodermal cell | 7.72e-22 | 6 |
endo-epithelial cell | 4.58e-21 | 42 |
buccal mucosa cell | 3.66e-15 | 1 |
endothelial cell of viscerocranial mucosa | 3.66e-15 | 1 |
keratinized cell of the oral mucosa | 3.66e-15 | 1 |
endodermal cell | 4.45e-15 | 58 |
keratinocyte | 1.89e-12 | 5 |
general ecto-epithelial cell | 9.81e-10 | 14 |
epithelial cell | 1.15e-09 | 253 |
corneal epithelial cell | 2.87e-08 | 2 |
epithelial cell of lung | 2.18e-07 | 19 |
epidermal cell | 2.60e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.92e-43 | 3 |
epithelium of bronchus | 1.92e-43 | 3 |
tracheobronchial tree | 3.63e-34 | 15 |
lower respiratory tract | 3.63e-34 | 15 |
bronchus | 2.16e-26 | 5 |
trachea | 3.41e-19 | 7 |
respiratory airway | 3.41e-19 | 7 |
thoracic cavity element | 5.53e-15 | 34 |
thoracic cavity | 5.53e-15 | 34 |
simple columnar epithelium | 5.66e-15 | 9 |
thoracic segment organ | 1.51e-14 | 35 |
respiratory primordium | 2.22e-13 | 38 |
endoderm of foregut | 2.22e-13 | 38 |
respiratory tract | 1.51e-12 | 54 |
segment of respiratory tract | 9.11e-11 | 47 |
thoracic segment of trunk | 1.05e-09 | 52 |
respiratory system | 5.14e-09 | 74 |
epithelial fold | 1.55e-07 | 47 |
respiratory tract epithelium | 2.18e-07 | 19 |
lung epithelium | 2.18e-07 | 19 |