FFCP PHASE1:Hg19::chr11:9113106..9113118,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57758 | |EntrezGene=57758 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30425 | |HGNC=30425 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000450649_5end | |association_with_transcript=-13bp_to_ENST00000450649_5end | ||
|cluster_id=chr11:9113106..9113118,- | |||
|coexpression_cluster_id=C194 | |||
|description=CAGE_peak_3_at_SCUBE2_5end | |description=CAGE_peak_3_at_SCUBE2_5end | ||
|id=chr11:9113106..9113118,- | |id=chr11:9113106..9113118,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.83e-14;7!CL:0000586;2.83e-14;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.77e-14,7;CL:0000586,2.77e-14,7 | |||
|ontology_enrichment_development_v019=UBERON:0006603;9.09e-14;65!UBERON:0004874;4.53e-12;1!UBERON:0000358;5.62e-12;1!UBERON:0009117;3.69e-10;10!UBERON:0005564;3.69e-10;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5093;4.91e-25;4!DOID:1612;4.91e-25;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,4.54e-25,4;DOID:1612,4.54e-25,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.76e-28!115;UBERON:0001049!8.14e-10!57;UBERON:0005068!8.14e-10!57;UBERON:0006241!8.14e-10!57;UBERON:0007135!8.14e-10!57;UBERON:0003076!8.46e-10!15;UBERON:0003057!8.46e-10!15;UBERON:0003075!2.94e-08!86;UBERON:0007284!2.94e-08!86;UBERON:0005743!4.60e-08!86;UBERON:0001017!4.62e-08!82;UBERON:0000073!8.70e-08!94;UBERON:0001016!8.70e-08!94;UBERON:0002346!1.49e-07!90;UBERON:0003135!2.24e-07!11 | |ontology_enrichment_uberon=UBERON:0007023!2.76e-28!115;UBERON:0001049!8.14e-10!57;UBERON:0005068!8.14e-10!57;UBERON:0006241!8.14e-10!57;UBERON:0007135!8.14e-10!57;UBERON:0003076!8.46e-10!15;UBERON:0003057!8.46e-10!15;UBERON:0003075!2.94e-08!86;UBERON:0007284!2.94e-08!86;UBERON:0005743!4.60e-08!86;UBERON:0001017!4.62e-08!82;UBERON:0000073!8.70e-08!94;UBERON:0001016!8.70e-08!94;UBERON:0002346!1.49e-07!90;UBERON:0003135!2.24e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0003135;6.20e-24;11!UBERON:0003101;6.26e-17;22!UBERON:0000079;6.26e-17;22!UBERON:0000473;1.46e-12;8!UBERON:0000989;4.53e-12;1!UBERON:0008811;4.53e-12;1!UBERON:0005795;5.62e-12;1!UBERON:0001301;1.13e-11;1!UBERON:0000310;2.27e-10;10!UBERON:0001443;1.79e-09;11!UBERON:0000922;5.93e-08;49!UBERON:0003133;8.14e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,7.51e-24,11;UBERON:0003101,6.81e-17,22;UBERON:0000079,6.81e-17,22;UBERON:0000473,1.43e-12,8;UBERON:0000989,4.53e-12,1;UBERON:0008811,4.53e-12,1;UBERON:0006258,4.53e-12,1;UBERON:0005876,4.53e-12,1;UBERON:0004874,4.53e-12,1;UBERON:0001301,1.81e-11,1;UBERON:0000310,2.20e-10,10;UBERON:0001443,1.74e-09,11;UBERON:0003064,3.25e-09,28;UBERON:0004876,4.17e-09,11;UBERON:0005156,4.28e-08,59;UBERON:0000990,4.28e-08,59;UBERON:0003133,1.64e-07,48 | |||
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| ||
|short_description=p3@SCUBE2 | |short_description=p3@SCUBE2 | ||
}} | }} |
Latest revision as of 01:11, 25 September 2015
Short description: | p3@SCUBE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCUBE2_5end |
Coexpression cluster: | C194_MCF7_breast_prostate_Intestinal_diffuse_Wilms_Alveolar |
Association with transcript: | -13bp_to_ENST00000450649_5end |
EntrezGene: | SCUBE2 |
HGNC: | 30425 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.77e-14 | 7 |
germ cell | 2.77e-14 | 7 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 7.51e-24 | 11 |
male organism | 6.81e-17 | 22 |
male reproductive system | 6.81e-17 | 22 |
testis | 1.43e-12 | 8 |
penis | 4.53e-12 | 1 |
intromittent organ | 4.53e-12 | 1 |
lateral plate mesenchyme | 4.53e-12 | 1 |
undifferentiated genital tubercle | 4.53e-12 | 1 |
somatopleure | 4.53e-12 | 1 |
epididymis | 1.81e-11 | 1 |
breast | 2.20e-10 | 10 |
chest | 1.74e-09 | 11 |
intermediate mesoderm | 3.25e-09 | 28 |
urogenital ridge | 4.17e-09 | 11 |
reproductive structure | 4.28e-08 | 59 |
reproductive system | 4.28e-08 | 59 |
reproductive organ | 1.64e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 4.54e-25 | 4 |
breast cancer | 4.54e-25 | 4 |