FFCP PHASE1:Hg19::chr11:12188702..12188706,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:12188702..12188706,- | |||
|description=CAGE_peak_at_chr11:12188702..12188706,- | |description=CAGE_peak_at_chr11:12188702..12188706,- | ||
|id=chr11:12188702..12188706,- | |id=chr11:12188702..12188706,- | ||
|ontology_enrichment_celltype=CL:0000548!6.29e-10!679;CL:0000004!6.29e-10!679;CL:0000255!6.29e-10!679;CL:0000012!1.04e-09!682;CL:0002368!1.61e-09!13;CL:0000220!9.80e-09!246;CL:0002321!1.59e-08!248;CL:0000144!3.86e-08!625;CL:0000066!1.47e-07!254;CL:0000003!2.22e-07!722;CL:0002371!2.57e-07!591;CL:0000244!3.26e-07!4;CL:0000731!3.26e-07!4;CL:0002159!3.59e-07!13;CL:0000063!3.98e-07!578;CL:0002057!4.85e-07!42;CL:0000076!6.65e-07!62 | |ontology_enrichment_celltype=CL:0000548!6.29e-10!679;CL:0000004!6.29e-10!679;CL:0000255!6.29e-10!679;CL:0000012!1.04e-09!682;CL:0002368!1.61e-09!13;CL:0000220!9.80e-09!246;CL:0002321!1.59e-08!248;CL:0000144!3.86e-08!625;CL:0000066!1.47e-07!254;CL:0000003!2.22e-07!722;CL:0002371!2.57e-07!591;CL:0000244!3.26e-07!4;CL:0000731!3.26e-07!4;CL:0002159!3.59e-07!13;CL:0000063!3.98e-07!578;CL:0002057!4.85e-07!42;CL:0000076!6.65e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000244;2.51e-23;4!CL:0000731;2.51e-23;4!CL:0000317;6.85e-12;2!CL:1000448;6.85e-12;2!CL:0002308;6.85e-12;2!CL:0002140;6.85e-12;2!CL:0002159;1.45e-09;14!CL:0002328;1.66e-08;3!CL:0002166;3.24e-08;3!CL:0002621;3.24e-08;3!CL:0002368;3.59e-07;13!CL:0000319;4.13e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,3.27e-23,4;CL:0000731,3.27e-23,4;CL:0000317,1.13e-11,2;CL:1000448,1.13e-11,2;CL:0002308,1.13e-11,2;CL:0002140,1.13e-11,2;CL:0002159,2.15e-09,14;CL:0002328,1.93e-08,3;CL:0002621,2.16e-08,3;CL:0002166,3.76e-08,3;CL:0002368,3.37e-07,13;CL:0000319,4.51e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3030;4.13e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,4.51e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005910!1.45e-08!6;UBERON:0000365!8.15e-08!5;UBERON:0003914!1.08e-07!118 | |ontology_enrichment_uberon=UBERON:0005910!1.45e-08!6;UBERON:0000365!8.15e-08!5;UBERON:0003914!1.08e-07!118 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.06e-18;5!UBERON:0000486;1.81e-16;12!UBERON:0005910;1.30e-15;6!UBERON:0002419;6.85e-12;2!UBERON:0007771;6.85e-12;2!UBERON:0003297;6.85e-12;2!UBERON:0001821;6.85e-12;2!UBERON:0003487;6.85e-12;2!UBERON:0001820;6.85e-12;2!UBERON:0004815;1.66e-08;3!UBERON:0002031;1.66e-08;3!UBERON:0005911;2.29e-08;36!UBERON:0001949;3.24e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.30e-18,5;UBERON:0005910,1.54e-15,6;UBERON:0002419,1.13e-11,2;UBERON:0007771,1.13e-11,2;UBERON:0003297,1.13e-11,2;UBERON:0001821,1.13e-11,2;UBERON:0003487,1.13e-11,2;UBERON:0001820,1.13e-11,2;UBERON:0005089,1.13e-11,2;UBERON:0005088,1.13e-11,2;UBERON:0004815,1.93e-08,3;UBERON:0002031,1.93e-08,3;UBERON:0001949,2.16e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,1.39560233594486,0.436882744260345,0.263766978228454,0,0,0,0.602694528023977,1.46062018077475,0.487932798790507,0,0.204000691244253,0,0,0,0,0,0,0,0,0.383829398097213,0,0,1.204823675113,3.69754010166788,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0.929716147622738,0.411167888021826,2.47765096716083,0.575384784644301,0.256160706529101,0,4.13694816883942,4.51839278508678,6.77132432971709,0.564727018627814,0,0,0.612167784741805,0.320929027076094,0.639337125799041,0,0,0,0,0,0.622822248995575,0.502497330513487,0,0.65156653411535,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0.872188104285069,0,0.12663051166458,3.70745706277013,0.860509862246441,0,1.12135520028461,2.1349799145941,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0.113432183160021,0.179389635688862,0.213557388818567,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0.169560592310488,0.966304265816484,1.90922284413584,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.100528972411631,0.648119116109707,0,0,1.44331342025273,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,1.00789276919316,1.55952606966625,0,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.428933980974443,0,0,0,0.355391948742546,0,0.904318131178758,0,0.899756920638513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.482561763430822,0,0,0,0.164254312027618,0,0,0,0.601519410909855,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,1.14853107599234,1.30012049207304,0,0,0,0,0.275673144969061,0,0,0.170453254832202,0,0.661139661443912,0.384380134730212,9.57095343709381,0.2023155617111,0,2.51849877464512,0.6970372701606,0,0,1.73986598415015,0.18532421910392,1.14499909393593,0,0,0.190630193923825,0.255897791311334,0,0.636406495851874,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0.563391205064483,0.143411352204052,0,0,0,0,0,0,0,0.577332676353072,0.670302275535787,0,0.0941438007767792,2.58303223602738,5.05414427002877,3.54744122829341,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881931576729399,10.5341639962287,0,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0.160317640503067,0,0,0,0,0,0,0,0.235694034616795,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,0.251567901752575,0,0.228840068396924,0.302461847526478,0.310874401165561,1.33069634990671,1.59296767163702,0,0.310525913752519,0,0,0.521745061811734,0.450772826991655,0.380805212168795,0.813741466409323,2.90957854724095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0.308801447160972,0.219284049578707,0,0.38582807654183,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,2.21195617878347,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0.346576998451015,0,0,0,0.0752103283492573,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0.472775363535873,0.222462803784138,0.078493092850514,0,1.40136081656895,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0.162806537221949,0.213454691755431,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,1.39560233594486,0.436882744260345,0.263766978228454,0,0,0,0.602694528023977,1.46062018077475,0.487932798790507,0,0.204000691244253,0,0,0,0,0,0,0,0,0.383829398097213,0,0,1.204823675113,3.69754010166788,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0.929716147622738,0.411167888021826,2.47765096716083,0.575384784644301,0.256160706529101,0,4.13694816883942,4.51839278508678,6.77132432971709,0.564727018627814,0,0,0.612167784741805,0.320929027076094,0.639337125799041,0,0,0,0,0,0.622822248995575,0.502497330513487,0,0.65156653411535,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0.872188104285069,0,0.12663051166458,3.70745706277013,0.860509862246441,0,1.12135520028461,2.1349799145941,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0.113432183160021,0.179389635688862,0.213557388818567,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0.169560592310488,0.966304265816484,1.90922284413584,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.100528972411631,0.648119116109707,0,0,1.44331342025273,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,1.00789276919316,1.55952606966625,0,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.428933980974443,0,0,0,0.355391948742546,0,0.904318131178758,0,0.899756920638513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.482561763430822,0,0,0,0.164254312027618,0,0,0,0.601519410909855,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,1.14853107599234,1.30012049207304,0,0,0,0,0.275673144969061,0,0,0.170453254832202,0,0.661139661443912,0.384380134730212,9.57095343709381,0.2023155617111,0,2.51849877464512,0.6970372701606,0,0,1.73986598415015,0.18532421910392,1.14499909393593,0,0,0.190630193923825,0.255897791311334,0,0.636406495851874,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0.563391205064483,0.143411352204052,0,0,0,0,0,0,0,0.577332676353072,0.670302275535787,0,0.0941438007767792,2.58303223602738,5.05414427002877,3.54744122829341,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881931576729399,10.5341639962287,0,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0.160317640503067,0,0,0,0,0,0,0,0.235694034616795,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,0.251567901752575,0,0.228840068396924,0.302461847526478,0.310874401165561,1.33069634990671,1.59296767163702,0,0.310525913752519,0,0,0.521745061811734,0.450772826991655,0.380805212168795,0.813741466409323,2.90957854724095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0.308801447160972,0.219284049578707,0,0.38582807654183,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,2.21195617878347,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0.346576998451015,0,0,0,0.0752103283492573,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0.472775363535873,0.222462803784138,0.078493092850514,0,1.40136081656895,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0.162806537221949,0.213454691755431,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:12188702..12188706,- | |short_description=p@chr11:12188702..12188706,- | ||
}} | }} |
Latest revision as of 19:14, 23 July 2015
Short description: | p@chr11:12188702..12188706, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:12188702..12188706, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 3.27e-23 | 4 |
urothelial cell | 3.27e-23 | 4 |
sebum secreting cell | 1.13e-11 | 2 |
epithelial cell of sweat gland | 1.13e-11 | 2 |
epithelial cell of skin gland | 1.13e-11 | 2 |
acinar cell of sebaceous gland | 1.13e-11 | 2 |
general ecto-epithelial cell | 2.15e-09 | 14 |
bronchial epithelial cell | 1.93e-08 | 3 |
gingival epithelial cell | 2.16e-08 | 3 |
epithelial cell of Malassez | 3.76e-08 | 3 |
respiratory epithelial cell | 3.37e-07 | 13 |
mucus secreting cell | 4.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.30e-18 | 5 |
transitional epithelium | 1.54e-15 | 6 |
skin gland | 1.13e-11 | 2 |
epidermis gland | 1.13e-11 | 2 |
gland of integumental system | 1.13e-11 | 2 |
sebaceous gland | 1.13e-11 | 2 |
skin sebaceous gland | 1.13e-11 | 2 |
sweat gland | 1.13e-11 | 2 |
sweat gland placode | 1.13e-11 | 2 |
sebaceous gland placode | 1.13e-11 | 2 |
lower respiratory tract epithelium | 1.93e-08 | 3 |
epithelium of bronchus | 1.93e-08 | 3 |
gingival epithelium | 2.16e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 4.51e-07 | 1 |