FFCP PHASE1:Hg19::chr1:158985633..158985641,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3428 | |EntrezGene=3428 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5395 | |HGNC=5395 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=170bp_to_ENST00000474473_5end | |association_with_transcript=170bp_to_ENST00000474473_5end | ||
|cluster_id=chr1:158985633..158985641,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_38_at_IFI16_5end | |description=CAGE_peak_38_at_IFI16_5end | ||
|id=chr1:158985633..158985641,+ | |id=chr1:158985633..158985641,+ | ||
|ontology_enrichment_celltype=CL:0000839!3.17e-09!70;CL:0000557!4.44e-09!71;CL:0000766!2.09e-08!76;CL:0002194!3.13e-08!63;CL:0000576!3.13e-08!63;CL:0000040!3.13e-08!63;CL:0000559!3.13e-08!63;CL:0002009!5.98e-08!65;CL:0002057!1.58e-07!42;CL:0002031!4.18e-07!124;CL:0000860!5.40e-07!45 | |ontology_enrichment_celltype=CL:0000839!3.17e-09!70;CL:0000557!4.44e-09!71;CL:0000766!2.09e-08!76;CL:0002194!3.13e-08!63;CL:0000576!3.13e-08!63;CL:0000040!3.13e-08!63;CL:0000559!3.13e-08!63;CL:0002009!5.98e-08!65;CL:0002057!1.58e-07!42;CL:0002031!4.18e-07!124;CL:0000860!5.40e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000138;7.67e-18;6!CL:0000153;2.19e-12;9!CL:0000447;2.19e-12;9!CL:0000327;5.55e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,7.67e-18,6;CL:0000138,7.67e-18,6;CL:0000153,2.19e-12,9;CL:0000447,2.19e-12,9;CL:0000327,5.55e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!6.73e-11!1;DOID:4549!6.73e-11!1;DOID:5861!6.73e-11!1;DOID:6496!6.73e-11!1;DOID:3112!2.08e-10!1 | |ontology_enrichment_disease=DOID:3371!6.73e-11!1;DOID:4549!6.73e-11!1;DOID:5861!6.73e-11!1;DOID:6496!6.73e-11!1;DOID:3112!2.08e-10!1 | ||
|ontology_enrichment_disease_v019=DOID:3371;9.37e-99;1!DOID:4549;9.37e-99;1!DOID:5861;9.37e-99;1!DOID:6496;9.37e-99;1!DOID:1909;4.52e-50;2!DOID:201;7.67e-18;6!DOID:0060100;7.67e-18;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,9.37e-99,1;DOID:4549,9.37e-99,1;DOID:5861,9.37e-99,1;DOID:6496,9.37e-99,1;DOID:1909,4.52e-50,2;DOID:201,7.67e-18,6;DOID:0060100,7.67e-18,6 | |||
|ontology_enrichment_uberon=UBERON:0004765!3.37e-09!101;UBERON:0001434!3.37e-09!101;UBERON:0001474!4.36e-09!86;UBERON:0002371!6.28e-08!80 | |ontology_enrichment_uberon=UBERON:0004765!3.37e-09!101;UBERON:0001434!3.37e-09!101;UBERON:0001474!4.36e-09!86;UBERON:0002371!6.28e-08!80 | ||
|ontology_enrichment_uberon_v019=UBERON:0002418;4.27e-34;3!UBERON:0004755;4.27e-34;3!UBERON:0001003;5.93e-08;15!UBERON:0007376;5.93e-08;15!UBERON:0001474;7.18e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,4.27e-34,3;UBERON:0004755,4.27e-34,3;UBERON:0001003,5.93e-08,15;UBERON:0007376,5.93e-08,15;UBERON:0007383,5.93e-08,15 | |||
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|short_description=p38@IFI16 | |short_description=p38@IFI16 | ||
}} | }} |
Latest revision as of 22:06, 17 September 2015
Short description: | p38@IFI16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_38_at_IFI16_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 170bp_to_ENST00000474473_5end |
EntrezGene: | IFI16 |
HGNC: | 5395 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 7.67e-18 | 6 |
chondrocyte | 7.67e-18 | 6 |
GAG secreting cell | 2.19e-12 | 9 |
carbohydrate secreting cell | 2.19e-12 | 9 |
extracellular matrix secreting cell | 5.55e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 4.27e-34 | 3 |
skeletal tissue | 4.27e-34 | 3 |
skin epidermis | 5.93e-08 | 15 |
outer epithelium | 5.93e-08 | 15 |
enveloping layer of ectoderm | 5.93e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 9.37e-99 | 1 |
extraosseous chondrosarcoma | 9.37e-99 | 1 |
myxoid chondrosarcoma | 9.37e-99 | 1 |
extraskeletal myxoid chondrosarcoma | 9.37e-99 | 1 |
melanoma | 4.52e-50 | 2 |
connective tissue cancer | 7.67e-18 | 6 |
musculoskeletal system cancer | 7.67e-18 | 6 |