FFCP PHASE1:Hg19::chr10:6054574..6054588,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:6054574..6054588,- | |||
|coexpression_cluster_id=C3030 | |coexpression_cluster_id=C3030 | ||
|description=CAGE_peak_at_chr10:6054574..6054588,- | |description=CAGE_peak_at_chr10:6054574..6054588,- | ||
|id=chr10:6054574..6054588,- | |id=chr10:6054574..6054588,- | ||
|ontology_enrichment_celltype=CL:0000988!9.14e-22!182;CL:0002032!1.16e-19!165;CL:0000837!1.16e-19!165;CL:0000037!1.34e-19!172;CL:0000566!1.34e-19!172;CL:0000738!2.31e-18!140;CL:0002031!1.72e-16!124;CL:0002087!1.88e-16!119;CL:0000542!6.61e-11!53;CL:0000051!6.61e-11!53;CL:0000838!9.65e-10!52;CL:0000763!1.27e-09!112;CL:0000049!1.27e-09!112;CL:0000080!1.73e-08!6;CL:0000766!3.47e-08!76;CL:0000839!4.75e-08!70;CL:0000084!8.77e-08!25;CL:0000827!8.77e-08!25;CL:0000815!4.79e-07!2;CL:0000792!4.79e-07!2;CL:0002677!4.79e-07!2;CL:0002057!5.07e-07!42;CL:0000557!6.55e-07!71 | |ontology_enrichment_celltype=CL:0000988!9.14e-22!182;CL:0002032!1.16e-19!165;CL:0000837!1.16e-19!165;CL:0000037!1.34e-19!172;CL:0000566!1.34e-19!172;CL:0000738!2.31e-18!140;CL:0002031!1.72e-16!124;CL:0002087!1.88e-16!119;CL:0000542!6.61e-11!53;CL:0000051!6.61e-11!53;CL:0000838!9.65e-10!52;CL:0000763!1.27e-09!112;CL:0000049!1.27e-09!112;CL:0000080!1.73e-08!6;CL:0000766!3.47e-08!76;CL:0000839!4.75e-08!70;CL:0000084!8.77e-08!25;CL:0000827!8.77e-08!25;CL:0000815!4.79e-07!2;CL:0000792!4.79e-07!2;CL:0002677!4.79e-07!2;CL:0002057!5.07e-07!42;CL:0000557!6.55e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000815;6.92e-18;2!CL:0000792;6.92e-18;2!CL:0002677;6.92e-18;2!CL:0000898;3.00e-12;3!CL:0000084;4.96e-12;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,6.93e-18,2;CL:0000792,6.93e-18,2;CL:0002677,6.93e-18,2;CL:0000898,3.00e-12,3;CL:0000084,5.01e-12,25;CL:0000827,5.01e-12,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060058!3.62e-07!10 | |ontology_enrichment_disease=DOID:0060058!3.62e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060060;2.97e-10;1!DOID:0060061;2.97e-10;1!DOID:8691;2.97e-10;1!DOID:0060058;1.79e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,3.10e-10,1;DOID:0060061,3.10e-10,1;DOID:8691,3.10e-10,1;DOID:0060058,1.81e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0002193!7.93e-10!112;UBERON:0002390!2.35e-09!102;UBERON:0003061!2.35e-09!102 | |ontology_enrichment_uberon=UBERON:0002193!7.93e-10!112;UBERON:0002390!2.35e-09!102;UBERON:0003061!2.35e-09!102 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.00e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.00e-08,10;UBERON:0000358,1.00e-08,10;UBERON:0000307,1.00e-08,10;UBERON:0000091,1.00e-08,10;UBERON:0000087,1.00e-08,10;UBERON:0007010,1.00e-08,10;UBERON:0007806,1.00e-08,10;UBERON:0008780,1.00e-08,10;UBERON:0005728,1.00e-08,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0.575384784644301,0.768482119587302,0.47296445977717,0,0,0,0,0,0,0,0,0,0.659702600373432,0.398927315243264,0.426224750532694,0.580418477257168,0,0.622822248995575,0.502497330513487,1.0429658368404,0.434377689410233,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,5.85152733867373,1.30368906653436,1.4203434172042,1.94826728407911,4.90206010294764,1.47302953737419,0.443067789167242,3.24964636518019,11.9124927344878,14.1764688840267,1.64437904603676,3.03985019564433,1.15921234294021,0,0.267540828089713,0,0.793165398882963,0,0,0,0,0,0,0.150575119077773,0.383959833463255,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,1.12318871245384,0,0,0,0,0.1605880751037,1.81619736471943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22886768554957,0,0,0,0,0,0,0,3.29607748453519,0,0.19924798825107,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0.156980256395025,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,12.1573662759055,16.4340038798849,13.3660095366983,0,0,0,0.91227394607833,0,0,0,0,0,0,0.450970258243478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62887354279315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0,0,0,0,4.79969750051832,0,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0,0,0.281951753939561,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0.575384784644301,0.768482119587302,0.47296445977717,0,0,0,0,0,0,0,0,0,0.659702600373432,0.398927315243264,0.426224750532694,0.580418477257168,0,0.622822248995575,0.502497330513487,1.0429658368404,0.434377689410233,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,5.85152733867373,1.30368906653436,1.4203434172042,1.94826728407911,4.90206010294764,1.47302953737419,0.443067789167242,3.24964636518019,11.9124927344878,14.1764688840267,1.64437904603676,3.03985019564433,1.15921234294021,0,0.267540828089713,0,0.793165398882963,0,0,0,0,0,0,0.150575119077773,0.383959833463255,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,1.12318871245384,0,0,0,0,0.1605880751037,1.81619736471943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22886768554957,0,0,0,0,0,0,0,3.29607748453519,0,0.19924798825107,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0.156980256395025,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,12.1573662759055,16.4340038798849,13.3660095366983,0,0,0,0.91227394607833,0,0,0,0,0,0,0.450970258243478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62887354279315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0,0,0,0,4.79969750051832,0,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0,0,0.281951753939561,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p@chr10:6054574..6054588,- | |short_description=p@chr10:6054574..6054588,- | ||
}} | }} |
Latest revision as of 14:19, 23 July 2015
Short description: | p@chr10:6054574..6054588, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:6054574..6054588, - |
Coexpression cluster: | C3030_cord_CD4_mycosis_adult_anaplastic_hairy_Neutrophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 6.93e-18 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.93e-18 | 2 |
naive regulatory T cell | 6.93e-18 | 2 |
naive T cell | 3.00e-12 | 3 |
T cell | 5.01e-12 | 25 |
pro-T cell | 5.01e-12 | 25 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.00e-08 | 10 |
blastocyst | 1.00e-08 | 10 |
blastula | 1.00e-08 | 10 |
bilaminar disc | 1.00e-08 | 10 |
inner cell mass | 1.00e-08 | 10 |
cleaving embryo | 1.00e-08 | 10 |
connecting stalk | 1.00e-08 | 10 |
inner cell mass derived epiblast | 1.00e-08 | 10 |
extraembryonic mesoderm | 1.00e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 3.10e-10 | 1 |
cutaneous T cell lymphoma | 3.10e-10 | 1 |
mycosis fungoides | 3.10e-10 | 1 |
lymphoma | 1.81e-08 | 10 |