FFCP PHASE1:Hg19::chr1:197886646..197886657,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56956 | |EntrezGene=56956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14222 | |HGNC=14222 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ69 | |UniProt=Q9NQ69 | ||
|association_with_transcript=117bp_to_ENST00000367387_5end | |association_with_transcript=117bp_to_ENST00000367387_5end | ||
|cluster_id=chr1:197886646..197886657,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_5_at_LHX9_5end | |description=CAGE_peak_5_at_LHX9_5end | ||
|id=chr1:197886646..197886657,+ | |id=chr1:197886646..197886657,+ | ||
|ontology_enrichment_celltype=CL:0002620!6.64e-22!23;CL:0000242!2.01e-08!2 | |ontology_enrichment_celltype=CL:0002620!6.64e-22!23;CL:0000242!2.01e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002620;8.33e-49;23!CL:0000511;6.44e-16;1!CL:0002625;6.44e-16;1!CL:0000216;6.44e-16;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,7.25e-49,23;CL:0000511,6.44e-16,1;CL:0002625,6.44e-16,1;CL:0000216,6.44e-16,1;CL:0000057,2.93e-14,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.28e-19!5;DOID:450!1.28e-19!5;DOID:66!1.28e-19!5;DOID:423!1.28e-19!5;DOID:0080000!1.28e-19!5;DOID:11722!1.28e-19!5 | |ontology_enrichment_disease=DOID:17!1.28e-19!5;DOID:450!1.28e-19!5;DOID:66!1.28e-19!5;DOID:423!1.28e-19!5;DOID:0080000!1.28e-19!5;DOID:11722!1.28e-19!5 | ||
|ontology_enrichment_disease_v019=DOID:17;1.58e-45;5!DOID:450;1.58e-45;5!DOID:66;1.58e-45;5!DOID:423;1.58e-45;5!DOID:0080000;1.58e-45;5!DOID:11722;1.58e-45;5!DOID:3371;5.56e-16;1!DOID:4549;5.56e-16;1!DOID:5861;5.56e-16;1!DOID:6496;5.56e-16;1!DOID:2513;2.21e-15;1!DOID:3451;2.40e-08;2!DOID:4159;2.40e-08;2!DOID:0060122;2.40e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:17,8.92e-46,5;DOID:450,8.92e-46,5;DOID:66,8.92e-46,5;DOID:423,8.92e-46,5;DOID:0080000,8.92e-46,5;DOID:11722,8.92e-46,5;DOID:3371,5.56e-16,1;DOID:4549,5.56e-16,1;DOID:5861,5.56e-16,1;DOID:6496,5.56e-16,1;DOID:2513,3.17e-15,1;DOID:3451,2.87e-08,2;DOID:4159,2.87e-08,2;DOID:0060122,2.87e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0002097!3.15e-18!40;UBERON:0002199!8.62e-16!45;UBERON:0002416!8.62e-16!45 | |ontology_enrichment_uberon=UBERON:0002097!3.15e-18!40;UBERON:0002199!8.62e-16!45;UBERON:0002416!8.62e-16!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.40e-24;41!UBERON:0002199;1.91e-19;46!UBERON:0002416;1.91e-19;46!UBERON:0003102;3.98e-16;50!UBERON:0001136;6.44e-16;1!UBERON:0001343;6.44e-16;1!UBERON:0004910;6.44e-16;1!UBERON:0004813;6.44e-16;1!UBERON:0004909;1.29e-08;2!UBERON:0001897;2.40e-08;2!UBERON:0010225;2.40e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.04e-33,41;UBERON:0002199,1.08e-29,46;UBERON:0002416,1.08e-29,46;UBERON:0001136,6.44e-16,1;UBERON:0001343,6.44e-16,1;UBERON:0004910,6.44e-16,1;UBERON:0005154,6.44e-16,1;UBERON:0005295,6.44e-16,1;UBERON:0004813,6.44e-16,1;UBERON:0005297,6.44e-16,1;UBERON:0005294,6.44e-16,1;UBERON:0010141,6.44e-16,1;UBERON:0005891,6.44e-16,1;UBERON:0003102,2.77e-13,99;UBERON:0004909,1.29e-08,2;UBERON:0001897,1.86e-08,2;UBERON:0010225,1.86e-08,2 | |||
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| ||
|short_description=p5@LHX9 | |short_description=p5@LHX9 | ||
}} | }} |
Latest revision as of 13:27, 19 September 2015
Short description: | p5@LHX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LHX9_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 117bp_to_ENST00000367387_5end |
EntrezGene: | LHX9 |
HGNC: | 14222 |
UniProt: | Q9NQ69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 7.25e-49 | 23 |
androgen binding protein secreting cell | 6.44e-16 | 1 |
seminiferous tubule epithelial cell | 6.44e-16 | 1 |
Sertoli cell | 6.44e-16 | 1 |
fibroblast | 2.93e-14 | 76 |
Ontology term | p-value | n |
---|---|---|
skin of body | 2.04e-33 | 41 |
integument | 1.08e-29 | 46 |
integumental system | 1.08e-29 | 46 |
mesothelium | 6.44e-16 | 1 |
seminiferous tubule of testis | 6.44e-16 | 1 |
epithelium of male gonad | 6.44e-16 | 1 |
epithelial cord | 6.44e-16 | 1 |
sex cord | 6.44e-16 | 1 |
seminiferous tubule epithelium | 6.44e-16 | 1 |
testis sex cord | 6.44e-16 | 1 |
genital ridge | 6.44e-16 | 1 |
primitive sex cord of indifferent gonad | 6.44e-16 | 1 |
coelomic epithelium | 6.44e-16 | 1 |
surface structure | 2.77e-13 | 99 |
epithelium of gonad | 1.29e-08 | 2 |
dorsal plus ventral thalamus | 1.86e-08 | 2 |
thalamic complex | 1.86e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 8.92e-46 | 5 |
myotonic disease | 8.92e-46 | 5 |
muscle tissue disease | 8.92e-46 | 5 |
myopathy | 8.92e-46 | 5 |
muscular disease | 8.92e-46 | 5 |
myotonic dystrophy | 8.92e-46 | 5 |
chondrosarcoma | 5.56e-16 | 1 |
extraosseous chondrosarcoma | 5.56e-16 | 1 |
myxoid chondrosarcoma | 5.56e-16 | 1 |
extraskeletal myxoid chondrosarcoma | 5.56e-16 | 1 |
basal cell carcinoma | 3.17e-15 | 1 |
skin carcinoma | 2.87e-08 | 2 |
skin cancer | 2.87e-08 | 2 |
integumentary system cancer | 2.87e-08 | 2 |