FFCP PHASE1:Hg19::chr21:34915181..34915204,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2618 | |EntrezGene=2618 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4163 | |HGNC=4163 | ||
|TSSclassifier=strong | |||
|UniProt=F8WD69,P22102,Q59HH3 | |UniProt=F8WD69,P22102,Q59HH3 | ||
|association_with_transcript=0bp_to_ENST00000424203,NM_001136005,NM_001136006,uc002yry.2,uc002yrz.2,uc010gmd.2_5end | |association_with_transcript=0bp_to_ENST00000424203,NM_001136005,NM_001136006,uc002yry.2,uc002yrz.2,uc010gmd.2_5end | ||
|cluster_id=chr21:34915181..34915204,- | |||
|coexpression_cluster_id=C1768 | |coexpression_cluster_id=C1768 | ||
|description=CAGE_peak_4_at_GART_5end | |description=CAGE_peak_4_at_GART_5end | ||
|id=chr21:34915181..34915204,- | |id=chr21:34915181..34915204,- | ||
|ontology_enrichment_celltype=CL:0002057!3.78e-17!42;CL:0000860!1.74e-16!45;CL:0000738!3.92e-15!140;CL:0000766!2.75e-12!76;CL:0000037!5.58e-12!172;CL:0000566!5.58e-12!172;CL:0002031!1.81e-11!124;CL:0000988!1.94e-11!182;CL:0002087!3.87e-11!119;CL:0002032!3.37e-10!165;CL:0000837!3.37e-10!165;CL:0000839!4.25e-10!70;CL:0002009!6.46e-10!65;CL:0002194!1.35e-09!63;CL:0000576!1.35e-09!63;CL:0000040!1.35e-09!63;CL:0000559!1.35e-09!63;CL:0000557!1.38e-09!71;CL:0000763!3.28e-08!112;CL:0000049!3.28e-08!112 | |ontology_enrichment_celltype=CL:0002057!3.78e-17!42;CL:0000860!1.74e-16!45;CL:0000738!3.92e-15!140;CL:0000766!2.75e-12!76;CL:0000037!5.58e-12!172;CL:0000566!5.58e-12!172;CL:0002031!1.81e-11!124;CL:0000988!1.94e-11!182;CL:0002087!3.87e-11!119;CL:0002032!3.37e-10!165;CL:0000837!3.37e-10!165;CL:0000839!4.25e-10!70;CL:0002009!6.46e-10!65;CL:0002194!1.35e-09!63;CL:0000576!1.35e-09!63;CL:0000040!1.35e-09!63;CL:0000559!1.35e-09!63;CL:0000557!1.38e-09!71;CL:0000763!3.28e-08!112;CL:0000049!3.28e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.88e-18;33!CL:0002057;2.88e-18;33!CL:0000576;1.10e-13;48!CL:0000473;1.86e-12;39!CL:0000234;1.86e-12;39!CL:0000766;6.79e-12;69!CL:0002393;6.09e-08;6!CL:0002397;6.09e-08;6!CL:0000094;2.14e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.81e-27,42;CL:0002057,6.81e-27,42;CL:0000473,3.07e-23,48;CL:0000234,3.07e-23,48;CL:0000766,2.09e-22,72;CL:0000738,5.71e-20,136;CL:0000037,1.37e-17,168;CL:0000839,2.81e-17,66;CL:0000557,5.07e-17,67;CL:0002009,2.03e-16,61;CL:0000988,2.47e-16,177;CL:0002194,4.80e-16,59;CL:0000576,4.80e-16,59;CL:0000040,4.80e-16,59;CL:0000559,4.80e-16,59;CL:0000763,5.53e-16,108;CL:0000049,5.53e-16,108;CL:0002032,3.11e-15,161;CL:0000837,3.11e-15,161;CL:0002031,3.63e-15,120;CL:0002087,2.90e-13,115;CL:0002393,2.37e-08,9;CL:0002397,2.37e-08,9;CL:0000219,4.01e-08,386;CL:0000134,4.44e-08,354;CL:0002320,8.81e-08,361;CL:0000094,1.28e-07,8;CL:0000034,1.58e-07,441;CL:0000723,3.86e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;1.53e-18;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.51e-08!80;UBERON:0001474!5.67e-07!86 | |ontology_enrichment_uberon=UBERON:0002371!2.51e-08!80;UBERON:0001474!5.67e-07!86 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.77e-15,76;UBERON:0001474,3.32e-13,82;UBERON:0002405,4.00e-13,93;UBERON:0004765,1.34e-11,90;UBERON:0002390,5.24e-11,98;UBERON:0003061,5.24e-11,98;UBERON:0002193,9.02e-11,108;UBERON:0001434,3.25e-09,100;UBERON:0002384,3.32e-07,371 | |||
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| ||
|short_description=p4@GART | |short_description=p4@GART | ||
}} | }} |
Latest revision as of 04:46, 18 September 2015
Short description: | p4@GART |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GART_5end |
Coexpression cluster: | C1768_testis_CD8_Natural_embryonic_Eosinophils_CD4_CD14 |
Association with transcript: | 0bp_to_ENST00000424203, NM_001136005, NM_001136006, uc002yry.2, uc002yrz.2, uc010gmd.2_5end |
EntrezGene: | GART |
HGNC: | 4163 |
UniProt: | F8WD69P22102Q59HH3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.81e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.81e-27 | 42 |
defensive cell | 3.07e-23 | 48 |
phagocyte | 3.07e-23 | 48 |
myeloid leukocyte | 2.09e-22 | 72 |
leukocyte | 5.71e-20 | 136 |
hematopoietic stem cell | 1.37e-17 | 168 |
myeloid lineage restricted progenitor cell | 2.81e-17 | 66 |
granulocyte monocyte progenitor cell | 5.07e-17 | 67 |
macrophage dendritic cell progenitor | 2.03e-16 | 61 |
hematopoietic cell | 2.47e-16 | 177 |
monopoietic cell | 4.80e-16 | 59 |
monocyte | 4.80e-16 | 59 |
monoblast | 4.80e-16 | 59 |
promonocyte | 4.80e-16 | 59 |
myeloid cell | 5.53e-16 | 108 |
common myeloid progenitor | 5.53e-16 | 108 |
hematopoietic oligopotent progenitor cell | 3.11e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.11e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 3.63e-15 | 120 |
nongranular leukocyte | 2.90e-13 | 115 |
intermediate monocyte | 2.37e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.37e-08 | 9 |
motile cell | 4.01e-08 | 386 |
mesenchymal cell | 4.44e-08 | 354 |
connective tissue cell | 8.81e-08 | 361 |
granulocyte | 1.28e-07 | 8 |
stem cell | 1.58e-07 | 441 |
somatic stem cell | 3.86e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.77e-15 | 76 |
bone element | 3.32e-13 | 82 |
immune system | 4.00e-13 | 93 |
skeletal element | 1.34e-11 | 90 |
hematopoietic system | 5.24e-11 | 98 |
blood island | 5.24e-11 | 98 |
hemolymphoid system | 9.02e-11 | 108 |
skeletal system | 3.25e-09 | 100 |
connective tissue | 3.32e-07 | 371 |