FFCP PHASE1:Hg19::chr19:39971505..39971518,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:39971505..39971518,+
|short_description=p2@TIMM50
|description=CAGE_peak_2_at_TIMM50_5end
|association_with_transcript=0bp_to_ENST00000544017_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92609 | |EntrezGene=92609 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23656 | |HGNC=23656 | ||
|TSSclassifier=strong | |||
|UniProt=Q330K1 | |UniProt=Q330K1 | ||
|association_with_transcript=0bp_to_ENST00000544017_5end | |||
|cluster_id=chr19:39971505..39971518,+ | |||
|description=CAGE_peak_2_at_TIMM50_5end | |||
|id=chr19:39971505..39971518,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.75e-31!679;CL:0000004!3.75e-31!679;CL:0000255!3.75e-31!679;CL:0000012!2.19e-30!682;CL:0002321!1.29e-21!248;CL:0000220!5.38e-21!246;CL:0000144!1.56e-19!625;CL:0000055!5.85e-18!180;CL:0000003!8.63e-17!722;CL:0000066!1.87e-15!254;CL:0002371!7.74e-13!591;CL:0000222!7.56e-11!119;CL:0000063!2.29e-10!578;CL:0000221!4.70e-08!71;CL:0000393!1.02e-07!60;CL:0000211!1.02e-07!60;CL:0000183!4.32e-07!59;CL:0000680!4.37e-07!57;CL:0000056!4.37e-07!57;CL:0000355!4.37e-07!57;CL:0000192!5.72e-07!42;CL:0000514!5.72e-07!42;CL:0000333!5.87e-07!41 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.73e-22,250;CL:0000066,6.28e-16,253;CL:0000222,3.48e-11,121;CL:0000221,3.36e-08,72;CL:0000393,1.16e-07,61;CL:0000211,1.16e-07,61;CL:0000680,4.95e-07,58;CL:0000056,4.95e-07,58;CL:0000355,4.95e-07,58;CL:0000333,5.29e-07,41;CL:0000076,7.24e-07,63;CL:0000192,8.68e-07,43;CL:0000514,8.68e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!6.55e-14!239;DOID:162!1.56e-13!235;DOID:8692!2.48e-08!31;DOID:1240!2.72e-08!39;DOID:2531!4.68e-08!51;DOID:0060083!4.68e-08!51;DOID:0050686!7.66e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.36e-08;31!DOID:1240;3.72e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,8.40e-14,239;DOID:162,2.00e-13,235;DOID:8692,2.18e-08,31;DOID:1240,2.39e-08,39;DOID:2531,4.13e-08,51;DOID:0060083,4.13e-08,51;DOID:0050686,9.73e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0001637!1.10e-08!42;UBERON:0003509!1.10e-08!42;UBERON:0004572!1.10e-08!42;UBERON:0001981!1.91e-07!60;UBERON:0007500!1.91e-07!60;UBERON:0004537!1.91e-07!60;UBERON:0006965!1.91e-07!60;UBERON:0000055!2.84e-07!69;UBERON:0002049!2.94e-07!79;UBERON:0007798!2.94e-07!79;UBERON:0002100!7.67e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,8.05e-09,42;UBERON:0003509,8.05e-09,42;UBERON:0004572,8.05e-09,42;UBERON:0002100,1.04e-07,199;UBERON:0007503,1.35e-07,78;UBERON:0007500,2.18e-07,59;UBERON:0001981,2.18e-07,59;UBERON:0004537,2.18e-07,59;UBERON:0006965,2.18e-07,59;UBERON:0000055,3.26e-07,68;UBERON:0002049,3.37e-07,78;UBERON:0007798,3.37e-07,78;UBERON:0003914,8.35e-07,117 | |||
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| ||
|short_description=p2@TIMM50 | |||
}} | }} |
Latest revision as of 23:49, 17 September 2015
Short description: | p2@TIMM50 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TIMM50_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000544017_5end |
EntrezGene: | TIMM50 |
HGNC: | 23656 |
UniProt: | Q330K1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.73e-22 | 250 |
epithelial cell | 6.28e-16 | 253 |
mesodermal cell | 3.48e-11 | 121 |
ectodermal cell | 3.36e-08 | 72 |
electrically responsive cell | 1.16e-07 | 61 |
electrically active cell | 1.16e-07 | 61 |
muscle precursor cell | 4.95e-07 | 58 |
myoblast | 4.95e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.95e-07 | 58 |
migratory neural crest cell | 5.29e-07 | 41 |
squamous epithelial cell | 7.24e-07 | 63 |
smooth muscle cell | 8.68e-07 | 43 |
smooth muscle myoblast | 8.68e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
artery | 8.05e-09 | 42 |
arterial blood vessel | 8.05e-09 | 42 |
arterial system | 8.05e-09 | 42 |
trunk | 1.04e-07 | 199 |
epithelial vesicle | 1.35e-07 | 78 |
epithelial tube open at both ends | 2.18e-07 | 59 |
blood vessel | 2.18e-07 | 59 |
blood vasculature | 2.18e-07 | 59 |
vascular cord | 2.18e-07 | 59 |
vessel | 3.26e-07 | 68 |
vasculature | 3.37e-07 | 78 |
vascular system | 3.37e-07 | 78 |
epithelial tube | 8.35e-07 | 117 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 8.40e-14 | 239 |
cancer | 2.00e-13 | 235 |
myeloid leukemia | 2.18e-08 | 31 |
leukemia | 2.39e-08 | 39 |
hematologic cancer | 4.13e-08 | 51 |
immune system cancer | 4.13e-08 | 51 |
organ system cancer | 9.73e-08 | 137 |