FFCP PHASE1:Hg19::chr19:46894342..46894354,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:46894342..46894354,+
|short_description=p@chr19:46894342..46894354,+
|description=CAGE_peak_at_chr19:46894342..46894354,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:46894342..46894354,+ | |||
|coexpression_cluster_id=C193 | |||
|description=CAGE_peak_at_chr19:46894342..46894354,+ | |||
|id=chr19:46894342..46894354,+ | |||
|ontology_enrichment_celltype=CL:0000057!1.14e-38!75;CL:0000055!3.17e-26!180;CL:0002620!3.65e-26!23;CL:0002334!8.99e-24!12;CL:0002570!1.40e-16!8;CL:0000048!1.14e-15!430;CL:0000723!3.76e-15!436;CL:0000034!1.75e-14!444;CL:0002320!3.99e-13!365;CL:0000134!3.74e-11!358;CL:0000136!1.44e-10!15;CL:0000219!1.10e-08!390;CL:1000306!4.23e-08!4;CL:0002547!4.23e-08!4;CL:0002551!4.96e-08!6;CL:0000135!1.55e-07!3;CL:0000386!1.55e-07!3;CL:0000388!1.55e-07!3;CL:0000569!1.70e-07!4;CL:0000011!1.70e-07!4;CL:0002371!2.11e-07!591;CL:0002580!2.22e-07!3;CL:0002579!5.98e-07!3;CL:0002582!7.77e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.24e-35;12!CL:0002570;1.79e-20;8!CL:0000135;1.53e-14;3!CL:0000388;1.53e-14;3!CL:0002580;4.25e-14;3!CL:0000057;2.95e-10;73!CL:0002583;5.54e-10;2!CL:0000136;9.76e-09;13!CL:0002620;1.42e-08;23!CL:0000214;1.96e-07;3!CL:0002521;2.40e-07;3!CL:0002579;3.69e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,1.26e-35,12;CL:0000057,7.79e-26,76;CL:0002570,1.33e-20,8;CL:0000135,2.17e-14,3;CL:0000388,2.17e-14,3;CL:0000136,2.25e-14,15;CL:0002580,4.67e-14,3;CL:0002320,7.68e-13,361;CL:0000134,2.00e-11,354;CL:0000048,2.89e-11,427;CL:0000723,5.46e-11,433;CL:0000034,1.24e-10,441;CL:0002583,4.04e-10,2;CL:0000219,1.05e-09,386;CL:0002620,1.01e-08,23;CL:0000214,2.00e-07,3;CL:0002521,2.33e-07,3;CL:0002579,3.93e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.98e-10!5;DOID:450!1.98e-10!5;DOID:66!1.98e-10!5;DOID:423!1.98e-10!5;DOID:0080000!1.98e-10!5;DOID:11722!1.98e-10!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.38e-08;5!DOID:450;2.38e-08;5!DOID:66;2.38e-08;5!DOID:423;2.38e-08;5!DOID:0080000;2.38e-08;5!DOID:11722;2.38e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.57e-08,5;DOID:450,1.57e-08,5;DOID:66,1.57e-08,5;DOID:423,1.57e-08,5;DOID:0080000,1.57e-08,5;DOID:11722,1.57e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001013!4.59e-24!14;UBERON:0002199!1.60e-17!45;UBERON:0002416!1.60e-17!45;UBERON:0002384!1.57e-13!375;UBERON:0002097!8.94e-13!40;UBERON:0003102!7.03e-09!95;UBERON:0003688!9.01e-09!6;UBERON:0002358!9.01e-09!6;UBERON:0003684!9.01e-09!6;UBERON:0001178!9.01e-09!6;UBERON:0000415!4.23e-08!4;UBERON:0007240!4.23e-08!4;UBERON:0005742!4.23e-08!4;UBERON:0005734!4.23e-08!4;UBERON:0004664!4.23e-08!4;UBERON:0004663!4.23e-08!4;UBERON:0004457!4.55e-08!12;UBERON:0000042!4.55e-08!12;UBERON:0002072!1.02e-07!5;UBERON:0000043!1.55e-07!3;UBERON:0004905!2.09e-07!5;UBERON:0000982!2.09e-07!5;UBERON:0004770!2.09e-07!5;UBERON:0000947!2.14e-07!21;UBERON:0010191!2.14e-07!21;UBERON:0000914!2.71e-07!83;UBERON:0002329!2.71e-07!83;UBERON:0003077!2.71e-07!83;UBERON:0003059!2.71e-07!83;UBERON:0007282!2.71e-07!83;UBERON:0009618!2.71e-07!83;UBERON:0007285!2.71e-07!83;UBERON:0004573!2.97e-07!33;UBERON:0004571!2.97e-07!33;UBERON:0001135!6.79e-07!15;UBERON:0004290!6.92e-07!70;UBERON:0000486!8.88e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.41e-31;14!UBERON:0002072;4.04e-15;5!UBERON:0007846;1.53e-14;3!UBERON:0000043;1.53e-14;3!UBERON:0007845;1.53e-14;3!UBERON:0004457;5.10e-13;9!UBERON:0000042;5.10e-13;9!UBERON:0005406;2.43e-10;2!UBERON:0004905;2.28e-09;8!UBERON:0000982;2.28e-09;8!UBERON:0004770;2.28e-09;8!UBERON:0003688;1.53e-07;6!UBERON:0002358;1.53e-07;6!UBERON:0003684;1.53e-07;6!UBERON:0001178;1.53e-07;6!UBERON:0006915;1.96e-07;3!UBERON:0007616;1.96e-07;3!UBERON:0002217;1.96e-07;3!UBERON:0002018;1.96e-07;3!UBERON:0002190;2.40e-07;3!UBERON:0000310;2.82e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,7.70e-32,14;UBERON:0002072,3.03e-15,5;UBERON:0007846,2.17e-14,3;UBERON:0000043,2.17e-14,3;UBERON:0007845,2.17e-14,3;UBERON:0002384,2.87e-12,371;UBERON:0005406,1.60e-10,2;UBERON:0002199,8.32e-10,46;UBERON:0002416,8.32e-10,46;UBERON:0004457,1.29e-09,12;UBERON:0000042,1.29e-09,12;UBERON:0004905,3.00e-09,8;UBERON:0000982,3.00e-09,8;UBERON:0004770,3.00e-09,8;UBERON:0003688,1.83e-07,6;UBERON:0002358,1.83e-07,6;UBERON:0003684,1.83e-07,6;UBERON:0001178,1.83e-07,6;UBERON:0006915,2.00e-07,3;UBERON:0007616,2.00e-07,3;UBERON:0002217,2.00e-07,3;UBERON:0002018,2.00e-07,3;UBERON:0002190,2.33e-07,3;UBERON:0000310,3.07e-07,10 | |||
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| ||
|short_description=p@chr19:46894342..46894354,+ | |||
}} | }} |
Latest revision as of 15:15, 27 July 2015
Short description: | p@chr19:46894342..46894354, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:46894342..46894354, + |
Coexpression cluster: | C193_Mesenchymal_Adipocyte_mature_Cardiac_heart_CD14CD16_CD14 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 1.26e-35 | 12 |
fibroblast | 7.79e-26 | 76 |
mesenchymal stem cell of adipose | 1.33e-20 | 8 |
fibrocyte | 2.17e-14 | 3 |
tendon cell | 2.17e-14 | 3 |
fat cell | 2.25e-14 | 15 |
preadipocyte of the breast | 4.67e-14 | 3 |
connective tissue cell | 7.68e-13 | 361 |
mesenchymal cell | 2.00e-11 | 354 |
multi fate stem cell | 2.89e-11 | 427 |
somatic stem cell | 5.46e-11 | 433 |
stem cell | 1.24e-10 | 441 |
subcutaneous preadipocyte | 4.04e-10 | 2 |
motile cell | 1.05e-09 | 386 |
skin fibroblast | 1.01e-08 | 23 |
synovial cell | 2.00e-07 | 3 |
subcutaneous fat cell | 2.33e-07 | 3 |
omentum preadipocyte | 3.93e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 7.70e-32 | 14 |
hypodermis | 3.03e-15 | 5 |
dense regular connective tissue | 2.17e-14 | 3 |
tendon | 2.17e-14 | 3 |
regular connective tissue | 2.17e-14 | 3 |
connective tissue | 2.87e-12 | 371 |
perirenal fat | 1.60e-10 | 2 |
integument | 8.32e-10 | 46 |
integumental system | 8.32e-10 | 46 |
cavity lining | 1.29e-09 | 12 |
serous membrane | 1.29e-09 | 12 |
articulation | 3.00e-09 | 8 |
skeletal joint | 3.00e-09 | 8 |
articular system | 3.00e-09 | 8 |
omentum | 1.83e-07 | 6 |
peritoneum | 1.83e-07 | 6 |
abdominal cavity | 1.83e-07 | 6 |
visceral peritoneum | 1.83e-07 | 6 |
stratified squamous epithelium | 2.00e-07 | 3 |
layer of synovial tissue | 2.00e-07 | 3 |
synovial joint | 2.00e-07 | 3 |
synovial membrane of synovial joint | 2.00e-07 | 3 |
subcutaneous adipose tissue | 2.33e-07 | 3 |
breast | 3.07e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.57e-08 | 5 |
myotonic disease | 1.57e-08 | 5 |
muscle tissue disease | 1.57e-08 | 5 |
myopathy | 1.57e-08 | 5 |
muscular disease | 1.57e-08 | 5 |
myotonic dystrophy | 1.57e-08 | 5 |