UBERON:0000119: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000119 | |||
|is_a=UBERON:0000479 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cell layer | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="cell sheath" RELATED [];;"layer of cells" EXACT [] | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:06, 12 September 2014
| Name: | cell layer |
|---|---|
| Namespace: | FANTOM |
| Definition: | "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm] |
| Synonyms: |
"cell sheath" RELATED [] "layer of cells" EXACT [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue) |
|---|
Children
| is a: | UBERON:0000483 (epithelium),UBERON:0003210 (blood-cerebrospinal fluid barrier),UBERON:0004061 (neural tube mantle layer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000119 (cell layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
