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{{CL
{{CL
|id=CL:0000451
|alt_id=
|name=dendritic cell
|namespace=efo
|def="A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149]
|xref=BTO:0002042;;FMA:83036
|is_a=CL:0000738
|synonym="interdigitating cell" RELATED [];;"veiled cell" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=CL:0000542
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=CL:0000542
|has_quality=
|has_quality=
|id=CL:0000451
|is_a=CL:0000738
|is_obsolete=
|located_in=
|located_in=
|name=dendritic cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="interdigitating cell" RELATED [];;"veiled cell" RELATED []
|union_of=
|xref=BTO:0002042;;FMA:83036
}}
}}

Latest revision as of 16:33, 12 September 2014

Name:dendritic cell
Namespace:FANTOM
Definition:"A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149]
Xrefs:
links:

BTO:0002042

FMA:83036
Synonyms: "interdigitating cell" RELATED []
"veiled cell" RELATED []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000738(leukocyte)
disjoint_from:CL:0000542(lymphocyte)



Children


is a:CL:0000784 (plasmacytoid dendritic cell),CL:0000990 (conventional dendritic cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
  • 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
  • 11901-125F2 (migratory langerhans cells, donor1)
  • 11902-125F3 (migratory langerhans cells, donor2)

... further results Mouse (Mus musculus)

  • 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
  • 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
  • 11901-125F2 (migratory langerhans cells, donor1)
  • 11902-125F3 (migratory langerhans cells, donor2)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000451 (dendritic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.02e-142FFCP PHASE2:Hg19::chr15:101535004..101535045,+#_f4f460869cff33a633fadb55c7eb825fp@chr15:101535004..101535045, +
3.02e-142FFCP PHASE1:Hg19::chr15:101535004..101535045,+#_f4f460869cff33a633fadb55c7eb825fp@chr15:101535004..101535045, +
2.01e-127FFCP PHASE2:Hg19::chr6:341221..341236,-#_721bd7fb604e32170b22ad4c210410b2p@chr6:341221..341236, -
2.01e-127FFCP PHASE1:Hg19::chr6:341221..341236,-#_721bd7fb604e32170b22ad4c210410b2p@chr6:341221..341236, -
1.31e-124FFCP PHASE2:Hg19::chr16:57398251..57398254,+#_6c88667ba4f66defc0c656291de3b905p@chr16:57398251..57398254, +
1.31e-124FFCP PHASE2:Hg19::chr15:101534994..101535003,+#_6c88667ba4f66defc0c656291de3b905p@chr15:101534994..101535003, +
1.31e-124FFCP PHASE1:Hg19::chr15:101534994..101535003,+#_6c88667ba4f66defc0c656291de3b905p@chr15:101534994..101535003, +
1.31e-124FFCP PHASE2:Hg19::chr17:1674976..1674981,+#_6c88667ba4f66defc0c656291de3b905p@chr17:1674976..1674981, +
1.31e-124FFCP PHASE1:Hg19::chr17:1674976..1674981,+#_6c88667ba4f66defc0c656291de3b905p@chr17:1674976..1674981, +
1.31e-124FFCP PHASE1:Hg19::chr16:57398251..57398254,+#_6c88667ba4f66defc0c656291de3b905p@chr16:57398251..57398254, +
3.99e-114FFCP PHASE2:Hg19::chr13:75884283..75884317,-#_25f14e62665ff337b4815dc746a10587p@chr13:75884283..75884317, -
3.99e-114FFCP PHASE1:Hg19::chr13:75884283..75884317,-#_25f14e62665ff337b4815dc746a10587p@chr13:75884283..75884317, -
2.67e-109FFCP PHASE1:Hg19::chr16:10960104..10960115,+#_a56f1ed79591d3fbff65e955df9f46f5p4@AB463580
2.67e-109FFCP PHASE2:Hg19::chr15:101529373..101529387,+#_a56f1ed79591d3fbff65e955df9f46f5p@chr15:101529373..101529387, +
2.67e-109FFCP PHASE1:Hg19::chr15:101529373..101529387,+#_a56f1ed79591d3fbff65e955df9f46f5p@chr15:101529373..101529387, +
2.67e-109FFCP PHASE2:Hg19::chr16:10960104..10960115,+#_a56f1ed79591d3fbff65e955df9f46f5p4@AB463580
5.22e-107FFCP PHASE1:Hg19::chr14:68233218..68233229,-#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr14:68233218..68233229, -
5.22e-107FFCP PHASE2:Hg19::chr2:61080954..61080964,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr2:61080954..61080964, +
5.22e-107FFCP PHASE1:Hg19::chr3:119198717..119198735,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr3:119198717..119198735, +
5.22e-107FFCP PHASE1:Hg19::chr2:61080954..61080964,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr2:61080954..61080964, +
5.22e-107FFCP PHASE1:Hg19::chr18:59991691..59991708,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr18:59991691..59991708, +
5.22e-107FFCP PHASE2:Hg19::chr18:59991691..59991708,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr18:59991691..59991708, +
5.22e-107FFCP PHASE2:Hg19::chr14:68233218..68233229,-#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr14:68233218..68233229, -
5.22e-107FFCP PHASE2:Hg19::chr3:119198717..119198735,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr3:119198717..119198735, +
4.24e-104FFCP PHASE2:Hg19::chr16:10960091..10960099,+#_bfcb99f8d5e721ec5bb535e7cfc6ab79p3@AB463580
4.24e-104FFCP PHASE1:Hg19::chr16:10960091..10960099,+#_bfcb99f8d5e721ec5bb535e7cfc6ab79p3@AB463580
2.9e-97FFCP PHASE1:Hg19::chr12:112513512..112513567,-#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr12:112513512..112513567, -
2.9e-97FFCP PHASE2:Hg19::chr12:112513512..112513567,-#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr12:112513512..112513567, -
2.9e-97FFCP PHASE1:Hg19::chr16:57398441..57398460,+#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr16:57398441..57398460, +
2.9e-97FFCP PHASE2:Hg19::chr16:57398441..57398460,+#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr16:57398441..57398460, +
1.57e-95FFCP PHASE2:Hg19::chr7:150066722..150066738,+#_cd4840276288ab740f242b6d9c0aa675p10@REPIN1
1.57e-95FFCP PHASE1:Hg19::chr7:150066722..150066738,+#_cd4840276288ab740f242b6d9c0aa675p10@REPIN1
2.01e-95FFCP PHASE2:Hg19::chr13:75884320..75884362,-#_cec99754e1cae439feb45bb161292a64p@chr13:75884320..75884362, -
2.01e-95FFCP PHASE1:Hg19::chr13:75884320..75884362,-#_cec99754e1cae439feb45bb161292a64p@chr13:75884320..75884362, -
5.68e-92FFCP PHASE1:Hg19::chr11:117805926..117805937,+#_06e3273ecc959ed3c8190c40f9403f4ep@chr11:117805926..117805937, +
5.68e-92FFCP PHASE2:Hg19::chr11:117805926..117805937,+#_06e3273ecc959ed3c8190c40f9403f4ep@chr11:117805926..117805937, +
6.65e-92FFCP PHASE2:Hg19::chr10:61810336..61810349,+#_17fa55682aed5b189c7c04768ba8f726p@chr10:61810336..61810349, +
6.65e-92FFCP PHASE1:Hg19::chr10:61810336..61810349,+#_17fa55682aed5b189c7c04768ba8f726p@chr10:61810336..61810349, +
6.65e-92FFCP PHASE1:Hg19::chr16:57398263..57398266,+#_17fa55682aed5b189c7c04768ba8f726p@chr16:57398263..57398266, +
6.65e-92FFCP PHASE2:Hg19::chr16:57398263..57398266,+#_17fa55682aed5b189c7c04768ba8f726p@chr16:57398263..57398266, +
7.78e-92FFCP PHASE1:Hg19::chr16:57398271..57398274,+#_e301a2cdf81aac2db0478e63e9ede744p@chr16:57398271..57398274, +
7.78e-92FFCP PHASE2:Hg19::chr16:57398271..57398274,+#_e301a2cdf81aac2db0478e63e9ede744p@chr16:57398271..57398274, +
1.93e-89FFCP PHASE1:Hg19::chr16:10959804..10959811,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap5@AB463580
1.93e-89FFCP PHASE1:Hg19::chr3:119188705..119188718,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr3:119188705..119188718, +
1.93e-89FFCP PHASE1:Hg19::chr19:45487650..45487661,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr19:45487650..45487661, +
1.93e-89FFCP PHASE2:Hg19::chr13:75884392..75884395,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr13:75884392..75884395, -
1.93e-89FFCP PHASE2:Hg19::chr8:120974832..120974840,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr8:120974832..120974840, +
1.93e-89FFCP PHASE2:Hg19::chr16:10959868..10959879,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap2@AB463580
1.93e-89FFCP PHASE1:Hg19::chr13:75884392..75884395,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr13:75884392..75884395, -
1.93e-89FFCP PHASE2:Hg19::chr6:32726761..32726781,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr6:32726761..32726781, -
1.93e-89FFCP PHASE2:Hg19::chr16:10885979..10885991,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr16:10885979..10885991, +
1.93e-89FFCP PHASE1:Hg19::chr16:10959868..10959879,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap2@AB463580
1.93e-89FFCP PHASE2:Hg19::chr16:10959880..10959887,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap6@AB463580
1.93e-89FFCP PHASE2:Hg19::chr7:4773446..4773457,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr7:4773446..4773457, -
1.93e-89FFCP PHASE1:Hg19::chr8:120974832..120974840,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr8:120974832..120974840, +
1.93e-89FFCP PHASE1:Hg19::chr1:201376546..201376550,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr1:201376546..201376550, +
1.93e-89FFCP PHASE2:Hg19::chr3:52813932..52813943,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap11@ITIH1
1.93e-89FFCP PHASE1:Hg19::chr16:10959880..10959887,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap6@AB463580
1.93e-89FFCP PHASE1:Hg19::chr6:32726761..32726781,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr6:32726761..32726781, -
1.93e-89FFCP PHASE1:Hg19::chr16:10885979..10885991,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr16:10885979..10885991, +
1.93e-89FFCP PHASE2:Hg19::chr6:32729529..32729536,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap3@M95729
1.93e-89FFCP PHASE2:Hg19::chr19:45487650..45487661,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr19:45487650..45487661, +
1.93e-89FFCP PHASE2:Hg19::chr3:119188705..119188718,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr3:119188705..119188718, +
1.93e-89FFCP PHASE1:Hg19::chr7:4773446..4773457,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr7:4773446..4773457, -
1.93e-89FFCP PHASE2:Hg19::chr1:201376546..201376550,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr1:201376546..201376550, +
1.93e-89FFCP PHASE1:Hg19::chr3:52813932..52813943,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap11@ITIH1
1.93e-89FFCP PHASE2:Hg19::chr16:10959804..10959811,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap5@AB463580
1.93e-89FFCP PHASE1:Hg19::chr6:32729529..32729536,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap3@M95729
2.24e-88FFCP PHASE1:Hg19::chr16:57397882..57397931,-#_e94d712097b48c7c83056b6b6c2f3fa2p1@CU693343
2.24e-88FFCP PHASE2:Hg19::chr16:57397882..57397931,-#_e94d712097b48c7c83056b6b6c2f3fa2p1@CU693343
2.51e-88FFCP PHASE2:Hg19::chr16:57397593..57397602,+#_5d429a179c40b07fbe495a7e9962e31cp@chr16:57397593..57397602, +
2.51e-88FFCP PHASE1:Hg19::chr16:57397593..57397602,+#_5d429a179c40b07fbe495a7e9962e31cp@chr16:57397593..57397602, +
3.53e-88FFCP PHASE1:Hg19::chr16:57399022..57399038,+#_8c5b82dae79cb2e57c0993a1085a6d42p@chr16:57399022..57399038, +
3.53e-88FFCP PHASE2:Hg19::chr16:57399022..57399038,+#_8c5b82dae79cb2e57c0993a1085a6d42p@chr16:57399022..57399038, +
7.43e-88FFCP PHASE2:Hg19::chr16:57394436..57394449,+#_e83d7d168155ed0c99e18590f83c99cbp@chr16:57394436..57394449, +
7.43e-88FFCP PHASE1:Hg19::chr16:57394436..57394449,+#_e83d7d168155ed0c99e18590f83c99cbp@chr16:57394436..57394449, +
9.6e-88FFCP PHASE1:Hg19::chr16:57399043..57399070,+#_400a7c7783d49389760e065940938259p@chr16:57399043..57399070, +
9.6e-88FFCP PHASE2:Hg19::chr16:57399043..57399070,+#_400a7c7783d49389760e065940938259p@chr16:57399043..57399070, +
1.09e-87FFCP PHASE1:Hg19::chr16:57397927..57397934,+#_77c403bad37ba1adf026a942f99cb6f5p@chr16:57397927..57397934, +
1.09e-87FFCP PHASE2:Hg19::chr16:57397927..57397934,+#_77c403bad37ba1adf026a942f99cb6f5p@chr16:57397927..57397934, +
2.47e-82FFCP PHASE2:Hg19::chr16:57398987..57399006,+#_c8c945a7d1034e9739341c6fe180ae18p@chr16:57398987..57399006, +
2.47e-82FFCP PHASE1:Hg19::chr16:57397735..57397758,-#_c8c945a7d1034e9739341c6fe180ae18p3@CU693343
2.47e-82FFCP PHASE2:Hg19::chr16:57397735..57397758,-#_c8c945a7d1034e9739341c6fe180ae18p3@CU693343
2.47e-82FFCP PHASE1:Hg19::chr16:57398987..57399006,+#_c8c945a7d1034e9739341c6fe180ae18p@chr16:57398987..57399006, +
1.43e-80FFCP PHASE2:Hg19::chr10:61810305..61810318,+#_06594fbaca0bfda7295980d9760eb3d4p@chr10:61810305..61810318, +
1.43e-80FFCP PHASE1:Hg19::chr10:61810305..61810318,+#_06594fbaca0bfda7295980d9760eb3d4p@chr10:61810305..61810318, +
4.69e-80FFCP PHASE1:Hg19::chr6:341268..341280,-#_72dc91c74d6a051c8a2c483e8ca0044ep@chr6:341268..341280, -
4.69e-80FFCP PHASE2:Hg19::chr6:341268..341280,-#_72dc91c74d6a051c8a2c483e8ca0044ep@chr6:341268..341280, -
2.14e-79FFCP PHASE1:Hg19::chr12:50099795..50099808,-#_e6d518c9940f0139657f55bb5c8a119bp@chr12:50099795..50099808, -
2.14e-79FFCP PHASE2:Hg19::chr12:50099795..50099808,-#_e6d518c9940f0139657f55bb5c8a119bp@chr12:50099795..50099808, -
1.07e-77FFCP PHASE2:Hg19::chr6:337994..338015,+#_f1f6979ceef4005837fb45890e378951p@chr6:337994..338015, +
1.07e-77FFCP PHASE1:Hg19::chr6:337994..338015,+#_f1f6979ceef4005837fb45890e378951p@chr6:337994..338015, +
5.2e-77FFCP PHASE2:Hg19::chr17:1674956..1674967,+#_68dbb7f73d05d7f5244579561ac10a2cp@chr17:1674956..1674967, +
5.2e-77FFCP PHASE1:Hg19::chr17:1674956..1674967,+#_68dbb7f73d05d7f5244579561ac10a2cp@chr17:1674956..1674967, +
7.7e-77FFCP PHASE1:Hg19::chr16:57397561..57397572,+#_c5591d524f3ee23be59b239e41342b75p@chr16:57397561..57397572, +
7.7e-77FFCP PHASE2:Hg19::chr16:57397561..57397572,+#_c5591d524f3ee23be59b239e41342b75p@chr16:57397561..57397572, +
8.79e-75FFCP PHASE1:Hg19::chr13:75884255..75884262,-#_c0621686af8972180e53853ae5301c92p@chr13:75884255..75884262, -
8.79e-75FFCP PHASE1:Hg19::chr1:159272441..159272452,+#_c0621686af8972180e53853ae5301c92p5@FCER1A
8.79e-75FFCP PHASE1:Hg19::chr2:173867941..173867955,+#_c0621686af8972180e53853ae5301c92p@chr2:173867941..173867955, +
8.79e-75FFCP PHASE2:Hg19::chr1:159272441..159272452,+#_c0621686af8972180e53853ae5301c92p5@FCER1A

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