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{{UBERON
{{UBERON
|id=UBERON:0000076
|alt_id=
|name=external ectoderm
|namespace=
|def="The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm]
|xref=EHDAA2:0001968;;EHDAA:1494;;EHDAA:350;;EHDAA:4784;;EHDAA:4790;;EHDAA:4796;;EHDAA:7860;;EMAPA:16096;;EMAPA:16539;;FMA:87656;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png;;ncithesaurus:Surface_Ectoderm
|is_a=UBERON:0000923
|synonym="surface ectoderm" EXACT []
|comment=Editor note: merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube).
|comment=Editor note: merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube).
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000076
|is_a=UBERON:0000490 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=external ectoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0000924
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="surface ectoderm" EXACT []
|union_of=
|xref=EHDAA2:0001968;;EHDAA:1494;;EHDAA:350;;EHDAA:4784;;EHDAA:4790;;EHDAA:4796;;EHDAA:7860;;EMAPA:16096;;EMAPA:16539;;FMA:87656;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png;;ncithesaurus:Surface_Ectoderm
}}
}}

Latest revision as of 17:05, 12 September 2014

Name:external ectoderm
Namespace:FANTOM
Definition:"The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm]
Xrefs:
links:

EHDAA2:0001968
EHDAA:1494
EHDAA:350
EHDAA:4784
EHDAA:4790
EHDAA:4796
EHDAA:7860
EMAPA:16096
EMAPA:16539
FMA:87656
[ 200px-Ectoderm.png 200px-Ectoderm.png]

ncithesaurus:Surface_Ectoderm
Synonyms: "surface ectoderm" EXACT []
Comments:Editor note: merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube).

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000490(unilaminar epithelium),UBERON:0005291(embryonic tissue)
part_of:UBERON:0000922(embryo),UBERON:0000924(ectoderm)



Children

develops from:UBERON:0001811 (conjunctiva),UBERON:0007383 (enveloping layer of ectoderm),UBERON:0011272 (embryonic skin basal layer)
part of:UBERON:0003050 (olfactory placode),UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000076 (external ectoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:77686655..77686662,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr9:77686655..77686662, +
1.87e-86FFCP PHASE1:Mm9::chr5:88098535..88098555,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88098535..88098555, +
1.87e-86FFCP PHASE1:Mm9::chr4:118640598..118640603,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr4:118640598..118640603, -
1.87e-86FFCP PHASE1:Mm9::chr18:6733951..6733958,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr18:6733951..6733958, +
1.87e-86FFCP PHASE2:Mm9::chr13:23557637..23557642,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr13:23557637..23557642, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358983..88358986,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88358983..88358986, +
1.87e-86FFCP PHASE1:Mm9::chr5:88215663..88215674,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88215663..88215674, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393258..103393296,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:103393258..103393296, +
1.87e-86FFCP PHASE2:Mm9::chr4:118640761..118640774,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr4:118640761..118640774, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123539..88123551,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88123539..88123551, +
1.87e-86FFCP PHASE1:Mm9::chr2:109975213..109975217,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr2:109975213..109975217, +
1.87e-86FFCP PHASE2:Mm9::chr15:103393227..103393240,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:103393227..103393240, -
1.87e-86FFCP PHASE1:Mm9::chr15:74707088..74707089,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:74707088..74707089, -
1.87e-86FFCP PHASE2:Mm9::chr12:8768872..8768876,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr12:8768872..8768876, -
1.87e-86FFCP PHASE2:Mm9::chr5:88215632..88215662,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88215632..88215662, +
1.87e-86FFCP PHASE2:Mm9::chr5:88109869..88109894,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88109869..88109894, +
1.87e-86FFCP PHASE2:Mm9::chr5:73491357..73491360,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:73491357..73491360, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358835..88358840,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88358835..88358840, +
1.87e-86FFCP PHASE1:Mm9::chr5:88210886..88210920,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88210886..88210920, -
1.87e-86FFCP PHASE1:Mm9::chr2:28416848..28416860,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr2:28416848..28416860, -
1.87e-86FFCP PHASE1:Mm9::chr1:40637138..40637147,+#_a8d6f04d47925873fcf5aa896dd73fd1p10@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr5:88123986..88123989,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88123986..88123989, +
1.87e-86FFCP PHASE2:Mm9::chr4:118636395..118636401,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr4:118636395..118636401, +
1.87e-86FFCP PHASE1:Mm9::chr5:88217569..88217586,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88217569..88217586, +
1.87e-86FFCP PHASE1:Mm9::chr5:88109964..88109969,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88109964..88109969, -
1.87e-86FFCP PHASE1:Mm9::chr10:81564930..81564939,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr10:81564930..81564939, +
1.87e-86FFCP PHASE2:Mm9::chr9:77686655..77686662,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr9:77686655..77686662, +
1.87e-86FFCP PHASE2:Mm9::chr11:109658712..109658715,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr11:109658712..109658715, -
1.87e-86FFCP PHASE2:Mm9::chr5:88210852..88210888,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88210852..88210888, +
1.87e-86FFCP PHASE2:Mm9::chr5:88104060..88104087,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88104060..88104087, -
1.87e-86FFCP PHASE2:Mm9::chr5:151567427..151567434,+#_a8d6f04d47925873fcf5aa896dd73fd1p10@Pds5b
1.87e-86FFCP PHASE1:Mm9::chr5:88361470..88361479,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88361470..88361479, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123986..88123989,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88123986..88123989, +
1.87e-86FFCP PHASE1:Mm9::chr19:56109584..56109587,+#_a8d6f04d47925873fcf5aa896dd73fd1p1@uc008hyp.1
1.87e-86FFCP PHASE2:Mm9::chr1:139647999..139648007,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr1:139647999..139648007, -
1.87e-86FFCP PHASE1:Mm9::chr4:118634547..118634566,+#_a8d6f04d47925873fcf5aa896dd73fd1p2@Lao1
1.87e-86FFCP PHASE1:Mm9::chr6:24162312..24162345,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr6:24162312..24162345, -
1.87e-86FFCP PHASE1:Mm9::chr5:88209128..88209157,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88209128..88209157, +
1.87e-86FFCP PHASE2:Mm9::chr11:6538794..6538800,-#_a8d6f04d47925873fcf5aa896dd73fd1p4@Wap
1.87e-86FFCP PHASE2:Mm9::chr1:23404398..23404401,-#_a8d6f04d47925873fcf5aa896dd73fd1p1@uc007amc.1
1.87e-86FFCP PHASE2:Mm9::chr5:88123730..88123744,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88123730..88123744, +
1.87e-86FFCP PHASE1:Mm9::chr5:88106613..88106646,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88106613..88106646, +
1.87e-86FFCP PHASE2:Mm9::chr18:53658339..53658343,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr18:53658339..53658343, -
1.87e-86FFCP PHASE1:Mm9::chr2:99574978..99574987,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr2:99574978..99574987, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393839..103393860,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:103393839..103393860, -
1.87e-86FFCP PHASE2:Mm9::chr5:88209021..88209051,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88209021..88209051, +
1.87e-86FFCP PHASE2:Mm9::chr5:88100023..88100041,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88100023..88100041, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358910..88358931,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88358910..88358931, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123730..88123744,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88123730..88123744, +
1.87e-86FFCP PHASE1:Mm9::chr11:109658667..109658675,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr11:109658667..109658675, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393725..103393729,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:103393725..103393729, -
1.87e-86FFCP PHASE1:Mm9::chr4:115520060..115520062,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr4:115520060..115520062, -
1.87e-86FFCP PHASE2:Mm9::chr2:99574978..99574987,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr2:99574978..99574987, +
1.87e-86FFCP PHASE2:Mm9::chr5:88123593..88123599,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88123593..88123599, -
1.87e-86FFCP PHASE1:Mm9::chr5:88100568..88100584,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88100568..88100584, -
1.87e-86FFCP PHASE1:Mm9::chr18:79024191..79024193,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr18:79024191..79024193, +
1.87e-86FFCP PHASE2:Mm9::chr5:88361418..88361423,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88361418..88361423, +
1.87e-86FFCP PHASE1:Mm9::chr8:69495848..69495849,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr8:69495848..69495849, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393382..103393391,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:103393382..103393391, -
1.87e-86FFCP PHASE2:Mm9::chr6:137412973..137412974,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr6:137412973..137412974, +
1.87e-86FFCP PHASE2:Mm9::chr5:88204791..88204807,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88204791..88204807, +
1.87e-86FFCP PHASE2:Mm9::chr5:88095990..88096001,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88095990..88096001, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358781..88358799,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88358781..88358799, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123611..88123628,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88123611..88123628, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393297..103393307,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:103393297..103393307, -
1.87e-86FFCP PHASE2:Mm9::chr5:88215700..88215705,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88215700..88215705, +
1.87e-86FFCP PHASE2:Mm9::chr5:88121676..88121704,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88121676..88121704, -
1.87e-86FFCP PHASE1:Mm9::chr5:88204809..88204827,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88204809..88204827, +
1.87e-86FFCP PHASE1:Mm9::chr13:90032838..90032840,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr13:90032838..90032840, -
1.87e-86FFCP PHASE1:Mm9::chr11:6535571..6535575,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr11:6535571..6535575, -
1.87e-86FFCP PHASE2:Mm9::chr11:6535548..6535558,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr11:6535548..6535558, -
1.87e-86FFCP PHASE1:Mm9::chr4:118636813..118636824,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr4:118636813..118636824, +
1.87e-86FFCP PHASE1:Mm9::chr18:6595472..6595477,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr18:6595472..6595477, -
1.87e-86FFCP PHASE1:Mm9::chr15:99366344..99366348,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr15:99366344..99366348, -
1.87e-86FFCP PHASE2:Mm9::chr18:6733777..6733786,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr18:6733777..6733786, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358899..88358903,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88358899..88358903, +
1.87e-86FFCP PHASE2:Mm9::chr5:38893329..38893340,-#_a8d6f04d47925873fcf5aa896dd73fd1p8@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr5:88214331..88214347,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88214331..88214347, -
1.87e-86FFCP PHASE2:Mm9::chr5:88126164..88126171,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88126164..88126171, -
1.87e-86FFCP PHASE2:Mm9::chr4:118637931..118637942,+#_a8d6f04d47925873fcf5aa896dd73fd1p7@Lao1
1.87e-86FFCP PHASE1:Mm9::chr5:88217783..88217793,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88217783..88217793, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121815..88121823,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88121815..88121823, -
1.87e-86FFCP PHASE2:Mm9::chr12:45501817..45501821,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr12:45501817..45501821, +
1.87e-86FFCP PHASE2:Mm9::chr1:40637138..40637147,+#_a8d6f04d47925873fcf5aa896dd73fd1p10@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr5:88213608..88213623,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88213608..88213623, -
1.87e-86FFCP PHASE2:Mm9::chr5:88107092..88107108,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88107092..88107108, -
1.87e-86FFCP PHASE1:Mm9::chr5:88126164..88126171,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88126164..88126171, -
1.87e-86FFCP PHASE1:Mm9::chr11:29447361..29447364,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr11:29447361..29447364, -
1.87e-86FFCP PHASE1:Mm9::chr5:88096268..88096283,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88096268..88096283, +
1.87e-86FFCP PHASE1:Mm9::chr5:88210832..88210837,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88210832..88210837, +
1.87e-86FFCP PHASE2:Mm9::chr3:25229830..25229833,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr3:25229830..25229833, +
1.87e-86FFCP PHASE2:Mm9::chr4:118634330..118634340,+#_a8d6f04d47925873fcf5aa896dd73fd1p4@Lao1
1.87e-86FFCP PHASE1:Mm9::chr5:88109040..88109079,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88109040..88109079, +
1.87e-86FFCP PHASE1:Mm9::chr4:40836029..40836032,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr4:40836029..40836032, +
1.87e-86FFCP PHASE1:Mm9::chr16:45163355..45163401,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr16:45163355..45163401, +
1.87e-86FFCP PHASE2:Mm9::chr5:88209981..88209984,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88209981..88209984, +
1.87e-86FFCP PHASE2:Mm9::chr5:88103101..88103120,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88103101..88103120, -
1.87e-86FFCP PHASE2:Mm9::chr2:134688699..134688701,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr2:134688699..134688701, +
1.87e-86FFCP PHASE1:Mm9::chr5:88359009..88359014,-#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:88359009..88359014, -
1.87e-86FFCP PHASE1:Mm9::chr5:53394250..53394255,+#_a8d6f04d47925873fcf5aa896dd73fd1p@chr5:53394250..53394255, +

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